Rmu_sc0000054.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000054.1
OG0010108
Physical Location & Seq
Forward (+)
5264 .. 5581
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000054.1_g000001.1.cds

Sequence Viewer

Length: 318 bp
atgaaagcgaaagaagatccgagaacagcagcacaatacagcggagactgttactactcggatgatgatgacaatagctcctatgatagcgaagagtcttcgaccgagtcgtctccatcttcttcaagagagagagagccctataataatcagcagcagaaggaatcagatcagaataataagcaggaccatgttctggttgtggctggctgcaaatcgtgtctcatgtattacatggtccccaaacagcacgaggattgccccaaatgcagtggccagcttctccacttcgatcgatccgaaagcggctcaccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.89

Weight (kDa)

4.61

Isoelectric Point (pI)

87.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 109
AccB7I CCANNNNNTGG 1 cut(s) 196
AciI CCGC 2 cut(s) 42, 306
AclWI GGATC 2 cut(s) 11, 291
AcoI YGGCCR 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 1 cut(s) 126
AluBI AGCT 2 cut(s) 78, 280
AluI AGCT 2 cut(s) 78, 280
Alw26I GTCTC 3 cut(s) 39, 117, 227
AlwI GGATC 2 cut(s) 11, 291
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 3 cut(s) 29, 154, 210
AspS9I GGNCC 2 cut(s) 187, 238
AsuHPI GGTGA 1 cut(s) 303
AvaII GGWCC 2 cut(s) 187, 238
BalI TGGCCA 1 cut(s) 276
BanII GRGCYC 1 cut(s) 141
BauI CACGAG 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 3 cut(s) 41, 166, 197
BccI CCATC 1 cut(s) 124
BcoDI GTCTC 3 cut(s) 39, 117, 227
BisI GCNGC 4 cut(s) 30, 155, 211, 307
BlsI GCNGC 4 cut(s) 31, 156, 212, 308
Bme18I GGWCC 2 cut(s) 187, 238
BmgT120I GGNCC 2 cut(s) 187, 238
BmiI GGNNCC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 90
Bsa29I ATCGAT 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 1 cut(s) 196
BseCI ATCGAT 1 cut(s) 295
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 196
BseXI GCAGC 3 cut(s) 41, 166, 197
Bsh1285I CGRYCG 2 cut(s) 105, 295
BshFI GGCC 1 cut(s) 276
BshVI ATCGAT 1 cut(s) 295
BsiEI CGRYCG 2 cut(s) 105, 295
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 3 cut(s) 39, 117, 227
BsmBI CGTCTC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 4 cut(s) 16, 169, 292, 296
BspACI CCGC 2 cut(s) 42, 306
BspANI GGCC 1 cut(s) 276
BspDI ATCGAT 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 240
BspPI GGATC 2 cut(s) 11, 291
BssMI GATC 4 cut(s) 16, 169, 292, 296
BssSI CACGAG 1 cut(s) 251
Bst2BI CACGAG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 50
Bst6I CTCTTC 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 208, 278
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 4 cut(s) 19, 172, 295, 299
BstMAI GTCTC 3 cut(s) 39, 117, 227
BstMBI GATC 4 cut(s) 16, 169, 292, 296
BstMCI CGRYCG 2 cut(s) 105, 295
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstV1I GCAGC 3 cut(s) 41, 166, 197
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
Bsu15I ATCGAT 1 cut(s) 295
BsuRI GGCC 1 cut(s) 276
BsuTUI ATCGAT 1 cut(s) 295
BtsCI GGATG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 277
Cac8I GCNNGC 2 cut(s) 208, 278
Cfr13I GGNCC 2 cut(s) 187, 238
ClaI ATCGAT 1 cut(s) 295
CspCI CAANNNNNGTGG 2 cut(s) 253, 288
CviAII CATG 4 cut(s) 191, 226, 235, 315
CviJI RGCY 7 cut(s) 78, 139, 206, 210, 276, 280, 309
CviKI_1 RGCY 7 cut(s) 78, 139, 206, 210, 276, 280, 309
DpnI GATC 4 cut(s) 18, 171, 294, 298
DpnII GATC 4 cut(s) 16, 169, 292, 296
DrdI GACNNNNNNGTC 1 cut(s) 109
DseDI GACNNNNNNGTC 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 2 cut(s) 187, 238
EcoT38I GRGCYC 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 4 cut(s) 194, 229, 238, 318
FaiI YATR 6 cut(s) 84, 144, 192, 227, 236, 316
FaqI GGGAC 1 cut(s) 224
FatI CATG 4 cut(s) 190, 225, 234, 314
Fnu4HI GCNGC 4 cut(s) 30, 155, 211, 307
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 4 cut(s) 30, 155, 211, 307
GluI GCNGC 4 cut(s) 30, 155, 211, 307
HaeIII GGCC 1 cut(s) 276
Hin1II CATG 4 cut(s) 194, 229, 238, 318
HinfI GANTC 3 cut(s) 95, 107, 164
HphI GGTGA 1 cut(s) 303
Hpy188I TCNGA 5 cut(s) 21, 61, 169, 174, 301
Hpy188III TCNNGA 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 2 cut(s) 213, 270
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
Hsp92II CATG 4 cut(s) 194, 229, 238, 318
Kzo9I GATC 4 cut(s) 16, 169, 292, 296
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 4 cut(s) 170, 182, 192, 290
Lsp1109I GCAGC 3 cut(s) 41, 166, 197
MaeIII GTNAC 1 cut(s) 50
MalI GATC 4 cut(s) 18, 171, 294, 298
MboI GATC 4 cut(s) 16, 169, 292, 296
MboII GAAGA 5 cut(s) 26, 90, 104, 111, 114
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 141
MlsI TGGCCA 1 cut(s) 276
MluNI TGGCCA 1 cut(s) 276
MlyI GAGTC 2 cut(s) 104, 116
MnlI CCTC 1 cut(s) 247
Mox20I TGGCCA 1 cut(s) 276
MscI TGGCCA 1 cut(s) 276
Msp20I TGGCCA 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 267
NdeII GATC 4 cut(s) 16, 169, 292, 296
NlaIII CATG 4 cut(s) 194, 229, 238, 318
NlaIV GGNNCC 1 cut(s) 240
PcsI WCGNNNNNNNCGW 2 cut(s) 107, 297
PfeI GAWTC 1 cut(s) 164
PflFI GACNNNGTC 1 cut(s) 106
PflMI CCANNNNNTGG 1 cut(s) 196
PkrI GCNGC 4 cut(s) 31, 156, 212, 308
Ple19I CGATCG 1 cut(s) 295
PleI GAGTC 2 cut(s) 103, 115
PpsI GAGTC 2 cut(s) 103, 115
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 2 cut(s) 187, 238
PsuI RGATCY 1 cut(s) 16
PsyI GACNNNGTC 1 cut(s) 106
PvuI CGATCG 1 cut(s) 295
SatI GCNGC 4 cut(s) 30, 155, 211, 307
Sau3AI GATC 4 cut(s) 16, 169, 292, 296
Sau96I GGNCC 2 cut(s) 187, 238
SchI GAGTC 2 cut(s) 104, 116
SduI GDGCHC 1 cut(s) 141
SetI ASST 2 cut(s) 80, 282
SinI GGWCC 2 cut(s) 187, 238
SsiI CCGC 2 cut(s) 42, 306
TaaI ACNGT 1 cut(s) 50
TaqI TCGA 3 cut(s) 101, 291, 295
TaqII GACCGA 1 cut(s) 119
TauI GCSGC 1 cut(s) 309
TfiI GAWTC 1 cut(s) 164
TscAI CASTG 1 cut(s) 277
TseI GCWGC 3 cut(s) 29, 154, 210
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 277
Tth111I GACNNNGTC 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 196
VpaK11BI GGWCC 2 cut(s) 187, 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.