Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010108

Physical Location & Seq

Genomic Coordinates Reverse (-)

23384630 .. 23386718

Gene Structure 2089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G219000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGACAGCTCCAAACATGGCGACGATTGCTGCTTCTCTGGAGAGGTCTCTCCAAAACTGCTCCTTGAACCACCATCATCACCACCAGCAACAGCAACAGAGCAGCAGCTGCATCTTCACAGGCGGTGAAGGGCAAGCGTCAAGCGTTACGCGGCAGGGAAGGTCATCGTCTTCAACCTCATCAACCTCAGATGATATTGCGCACCTGAATCAACTGCTTCCCAATTACAGCAATGACGCCACTTTAGAGCTCAACTCCCATGTCTCTCTTCCTTACCATTGGGAACAATGCCTCGATTTAAAGACAGGGGAGATTTACTACATAAACTGGAGGAACGGGATGAAAGCAAAAGAAGATCCAAGAGCAAGAGCAGAATACAGTGGAGAATACTACTCAGAAGACGAAAATAGCTCCTATGATAGCGAAGAGTCTTCGACTGAGTCGTCGCCATCTTCGTGCAGACAGAGGTACCAGCTGCAGAAGATAGAGAATATTAACAATAACGAGCACAATAATATTAACAACAACAACAACAATAATAATAATAATAATGTGTTGGTAGTGGCTGGCTGCAAAGCCTGTCTCATGTATTTCATGGTTCCAAAACAGCTCGAAGACTGCCCCAAATGCTCTGGTCAACTTCTCCACTTTGATCGATCCGAAAATGGCTCCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

25.29

Weight (kDa)

5.4

Isoelectric Point (pI)

68.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28070 AT2G33510 AT2G33510
fragaria_vesca	FvH4_4g23070
malus_domestica	MD13G1126400.v1.1 MD16G1126900.v1.1
prunus_persica	Prupe.1G219000_v2.0.a1
pyrus_communis	pycom13g10990 pycom16g10770
rosa_chinensis	RchiOBHm_Chr4g0429341
rosa_laevigata	RLG00000007079
rosa_multiflora	Rmu_co8435519.1_g000001 Rmu_sc0000054.1_g000001 Rmu_sc0003904.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370950
rosa_rugosa	Rorug04G0235200
rosa_samantha	Rh4AG290800 Rh4BG296700 Rh4CG312300 Rh4DG293700
rosa_wichuraiana	Rw4G025190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	442
Acc16I	TGCGCA	1 cut(s)	201
Acc65I	GGTACC	1 cut(s)	468
AccB1I	GGYRCC	1 cut(s)	468
AccII	CGCG	1 cut(s)	151
AciI	CCGC	2 cut(s)	123, 151
AclWI	GGATC	2 cut(s)	350, 651
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	1 cut(s)	470
AgsI	TTSAA	2 cut(s)	67, 174
AluBI	AGCT	6 cut(s)	8, 108, 250, 411, 475, 610
AluI	AGCT	6 cut(s)	8, 108, 250, 411, 475, 610
Alw21I	GWGCWC	2 cut(s)	252, 510
Alw26I	GTCTC	3 cut(s)	51, 268, 587
AlwI	GGATC	2 cut(s)	350, 651
AlwNI	CAGNNNCTG	1 cut(s)	108
ApeKI	GCWGC	6 cut(s)	29, 102, 105, 108, 475, 570
Asp718I	GGTACC	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	71, 137
BaeI	ACNNNNGTAYC	2 cut(s)	452, 485
BanI	GGYRCC	1 cut(s)	468
BanII	GRGCYC	1 cut(s)	252
BbsI	GAAGAC	4 cut(s)	162, 405, 423, 621
Bbv12I	GWGCWC	2 cut(s)	252, 510
BbvI	GCAGC	6 cut(s)	16, 95, 114, 117, 462, 557
BccI	CCATC	2 cut(s)	81, 457
BcoDI	GTCTC	3 cut(s)	51, 268, 587
BfmI	CTRYAG	1 cut(s)	476
BisI	GCNGC	7 cut(s)	30, 103, 106, 109, 152, 476, 571
BlsI	GCNGC	7 cut(s)	31, 104, 107, 110, 153, 477, 572
BmiI	GGNNCC	3 cut(s)	470, 600, 670
BmsI	GCATC	1 cut(s)	120
BpiI	GAAGAC	4 cut(s)	162, 405, 423, 621
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
BpmI	CTGGAG	2 cut(s)	59, 349
Bsa29I	ATCGAT	1 cut(s)	655
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	238
BseCI	ATCGAT	1 cut(s)	655
BseGI	GGATG	1 cut(s)	345
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	3 cut(s)	201, 408, 429
BseNI	ACTGG	1 cut(s)	332
BseXI	GCAGC	6 cut(s)	16, 95, 114, 117, 462, 557
BsgI	GTGCAG	1 cut(s)	478
Bsh1236I	CGCG	1 cut(s)	151
BshNI	GGYRCC	1 cut(s)	468
BshVI	ATCGAT	1 cut(s)	655
BsiHKAI	GWGCWC	2 cut(s)	252, 510
BsmAI	GTCTC	3 cut(s)	51, 268, 587
Bso31I	GGTCTC	1 cut(s)	51
Bsp1286I	GDGCHC	2 cut(s)	252, 510
Bsp143I	GATC	3 cut(s)	355, 652, 656
BspACI	CCGC	2 cut(s)	123, 151
BspCNI	CTCAG	3 cut(s)	200, 407, 430
BspDI	ATCGAT	1 cut(s)	655
BspFNI	CGCG	1 cut(s)	151
BspLI	GGNNCC	3 cut(s)	470, 600, 670
BspMAI	CTGCAG	1 cut(s)	480
BspPI	GGATC	2 cut(s)	350, 651
BspT107I	GGYRCC	1 cut(s)	468
BspTNI	GGTCTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	332
BssMI	GATC	3 cut(s)	355, 652, 656
BssNI	GRCGYC	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	2 cut(s)	273, 420
BstACI	GRCGYC	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	135, 568
BstDEI	CTNAG	3 cut(s)	187, 394, 438
BstF5I	GGATG	1 cut(s)	345
BstFNI	CGCG	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	3 cut(s)	358, 655, 659
BstMAI	GTCTC	3 cut(s)	51, 268, 587
BstMBI	GATC	3 cut(s)	355, 652, 656
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 108, 627
BstSFI	CTRYAG	1 cut(s)	476
BstUI	CGCG	1 cut(s)	151
BstV1I	GCAGC	6 cut(s)	16, 95, 114, 117, 462, 557
BstV2I	GAAGAC	4 cut(s)	162, 405, 423, 621
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
Bsu15I	ATCGAT	1 cut(s)	655
BsuTUI	ATCGAT	1 cut(s)	655
BtsCI	GGATG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	385
Cac8I	GCNNGC	2 cut(s)	135, 568
CaiI	CAGNNNCTG	1 cut(s)	108
CfoI	GCGC	1 cut(s)	202
ClaI	ATCGAT	1 cut(s)	655
CseI	GACGC	2 cut(s)	126, 245
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	5 cut(s)	16, 260, 586, 595, 675
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	3 cut(s)	187, 394, 438
DpnI	GATC	3 cut(s)	357, 654, 658
DpnII	GATC	3 cut(s)	355, 652, 656
DraI	TTTAAA	1 cut(s)	300
DrdI	GACNNNNNNGTC	1 cut(s)	442
DseDI	GACNNNNNNGTC	1 cut(s)	442
Eam1104I	CTCTTC	2 cut(s)	273, 420
EarI	CTCTTC	2 cut(s)	273, 420
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	51
Eco53kI	GAGCTC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	5 cut(s)	19, 263, 589, 598, 678
FaiI	YATR	7 cut(s)	17, 261, 323, 417, 587, 596, 676
FatI	CATG	5 cut(s)	15, 259, 585, 594, 674
Fnu4HI	GCNGC	7 cut(s)	30, 103, 106, 109, 152, 476, 571
FokI	GGATG	1 cut(s)	352
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	7 cut(s)	30, 103, 106, 109, 152, 476, 571
FspI	TGCGCA	1 cut(s)	201
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	7 cut(s)	30, 103, 106, 109, 152, 476, 571
GsuI	CTGGAG	2 cut(s)	59, 349
HgaI	GACGC	2 cut(s)	126, 245
HhaI	GCGC	1 cut(s)	202
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	5 cut(s)	19, 263, 589, 598, 678
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	638
HindII	GTYRAC	1 cut(s)	638
HinfI	GANTC	3 cut(s)	208, 428, 440
HphI	GGTGA	2 cut(s)	71, 137
Hpy166II	GTNNAC	1 cut(s)	638
Hpy188I	TCNGA	3 cut(s)	190, 397, 661
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	1 cut(s)	638
Hpy99I	CGWCG	2 cut(s)	25, 448
HpyAV	CCTTC	2 cut(s)	122, 153
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4V	TGCA	4 cut(s)	111, 459, 478, 573
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 108, 627
HpyF3I	CTNAG	3 cut(s)	187, 394, 438
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	5 cut(s)	19, 263, 589, 598, 678
HspAI	GCGC	1 cut(s)	200
KpnI	GGTACC	1 cut(s)	472
Kzo9I	GATC	3 cut(s)	355, 652, 656
LmnI	GCTCC	4 cut(s)	13, 65, 416, 674
Lsp1109I	GCAGC	6 cut(s)	16, 95, 114, 117, 462, 557
LweI	GCATC	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	3 cut(s)	357, 654, 658
MboI	GATC	3 cut(s)	355, 652, 656
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	2 cut(s)	252, 510
MluCI	AATT	1 cut(s)	223
MlyI	GAGTC	2 cut(s)	437, 449
MnlI	CCTC	6 cut(s)	36, 187, 196, 302, 324, 459
MseI	TTAA	3 cut(s)	299, 495, 519
MslI	CAYNNNNRTG	1 cut(s)	454
MspA1I	CMGCKG	2 cut(s)	108, 475
MvnI	CGCG	1 cut(s)	151
MwoI	GCNNNNNNNGC	3 cut(s)	26, 108, 627
NdeII	GATC	3 cut(s)	355, 652, 656
NlaIII	CATG	5 cut(s)	19, 263, 589, 598, 678
NlaIV	GGNNCC	3 cut(s)	470, 600, 670
NsbI	TGCGCA	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	2 cut(s)	440, 452
PfeI	GAWTC	1 cut(s)	208
PflFI	GACNNNGTC	1 cut(s)	439
PkrI	GCNGC	7 cut(s)	31, 104, 107, 110, 153, 477, 572
PleI	GAGTC	2 cut(s)	436, 448
PpsI	GAGTC	2 cut(s)	436, 448
Psp124BI	GAGCTC	1 cut(s)	252
PspN4I	GGNNCC	3 cut(s)	470, 600, 670
PstI	CTGCAG	1 cut(s)	480
PstNI	CAGNNNCTG	1 cut(s)	108
PsuI	RGATCY	1 cut(s)	355
PsyI	GACNNNGTC	1 cut(s)	439
PvuII	CAGCTG	2 cut(s)	108, 475
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
RseI	CAYNNNNRTG	1 cut(s)	454
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	3 cut(s)	299, 495, 519
SatI	GCNGC	7 cut(s)	30, 103, 106, 109, 152, 476, 571
Sau3AI	GATC	3 cut(s)	355, 652, 656
SchI	GAGTC	2 cut(s)	437, 449
SduI	GDGCHC	2 cut(s)	252, 510
SfaNI	GCATC	1 cut(s)	120
SfcI	CTRYAG	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	454
Sse9I	AATT	1 cut(s)	223
SsiI	CCGC	2 cut(s)	123, 151
SspI	AATATT	2 cut(s)	493, 517
SstI	GAGCTC	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	380
TaqI	TCGA	4 cut(s)	294, 434, 612, 655
TasI	AATT	1 cut(s)	223
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	3 cut(s)	299, 495, 519
Tru9I	TTAA	3 cut(s)	299, 495, 519
TscAI	CASTG	1 cut(s)	385
TseI	GCWGC	6 cut(s)	29, 102, 105, 108, 475, 570
TspDTI	ATGAA	2 cut(s)	356, 583
TspRI	CASTG	1 cut(s)	385
Tth111I	GACNNNGTC	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.