Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010108

Physical Location & Seq

Genomic Coordinates Reverse (-)

25652312 .. 25654483

Gene Structure 2172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGACAGCTCCGAACATGGCAACGATCGCCGCATCTCTGGAGCGGTCTATGCAAAACTGCTCCTTAAACCACCACCGCCAGACCACCATCGGTGACGGCGGTAACGGCAGCCAAAGCAGTCAAGGGTCGAGTCATGTTGGGATGAGAGGAAGGTCGTCGTCAACCTCATCAACCTCAGACGATGCTGCGCAGCAGAACCAATTCACACCTAACAACAACAACGAGGACACGGCTCTGGAACTCAACTCAAATGTCTCGCTCCCCTACCATTGGGAACAATGCCTCGATTTAAAGACGGGTGAGATTTACTACATAAATTGGAGGAACGGAATGAAAGCGAGAGAAGATCCAAGAACAACAGCACAATACAGCAGAGATTGTTACTACTCGGATGATGATGATGATGATGATGATAGCTCCTATGATAGCGAAGAGTCTTCGACTGAGTCGTCTCCATCTTCTTCAAGAGAGAGAGAGCCCTATAATAATCAGCAGAAGGAATCAGATCAGAACAATAAGCAGGACCATGTTCTGGTTGTGGCTGGCTGCAAATCGTGTCTCATGTATTACATGGTCCCCAAACAGCACGAGGATTGCCCCAAATGCAGTGGCCAGCTTCTCCACTTTGATCGATCCGACACTGGCTCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.24

Weight (kDa)

4.65

Isoelectric Point (pI)

60.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28070 AT2G33510 AT2G33510
fragaria_vesca	FvH4_4g23070
malus_domestica	MD13G1126400.v1.1 MD16G1126900.v1.1
prunus_persica	Prupe.1G219000_v2.0.a1
pyrus_communis	pycom13g10990 pycom16g10770
rosa_chinensis	RchiOBHm_Chr4g0429341
rosa_laevigata	RLG00000007079
rosa_multiflora	Rmu_co8435519.1_g000001 Rmu_sc0000054.1_g000001 Rmu_sc0003904.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370950
rosa_rugosa	Rorug04G0235200
rosa_samantha	Rh4AG290800 Rh4BG296700 Rh4CG312300 Rh4DG293700
rosa_wichuraiana	Rw4G025190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	448
Acc16I	TGCGCA	1 cut(s)	189
AccB7I	CCANNNNNTGG	1 cut(s)	532
AccBSI	CCGCTC	1 cut(s)	43
AciI	CCGC	4 cut(s)	30, 43, 76, 99
AclWI	GGATC	2 cut(s)	341, 627
AcoI	YGGCCR	1 cut(s)	610
AfiI	CCNNNNNNNGG	2 cut(s)	270, 532
AgsI	TTSAA	1 cut(s)	465
AluBI	AGCT	3 cut(s)	8, 417, 616
AluI	AGCT	3 cut(s)	8, 417, 616
Alw26I	GTCTC	3 cut(s)	259, 456, 563
AlwI	GGATC	2 cut(s)	341, 627
AoxI	GGCC	1 cut(s)	610
ApeKI	GCWGC	4 cut(s)	108, 185, 190, 546
Asp700I	GAANNNNTTC	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	2 cut(s)	523, 574
AsuHPI	GGTGA	3 cut(s)	104, 311, 639
AvaII	GGWCC	2 cut(s)	523, 574
BalI	TGGCCA	1 cut(s)	612
BanII	GRGCYC	1 cut(s)	480
BauI	CACGAG	1 cut(s)	587
BbsI	GAAGAC	1 cut(s)	429
BbvI	GCAGC	4 cut(s)	120, 172, 202, 533
BccI	CCATC	2 cut(s)	95, 463
BceAI	ACGGC	3 cut(s)	112, 121, 246
BcoDI	GTCTC	3 cut(s)	259, 456, 563
BisI	GCNGC	5 cut(s)	30, 109, 186, 191, 547
BlsI	GCNGC	5 cut(s)	31, 110, 187, 192, 548
Bme18I	GGWCC	2 cut(s)	523, 574
BmgT120I	GGNCC	2 cut(s)	523, 574
BmiI	GGNNCC	1 cut(s)	576
BmsI	GCATC	2 cut(s)	41, 172
BpiI	GAAGAC	1 cut(s)	429
BpmI	CTGGAG	1 cut(s)	59
Bsa29I	ATCGAT	1 cut(s)	631
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 532
Bse1I	ACTGG	1 cut(s)	646
BseCI	ATCGAT	1 cut(s)	631
BseGI	GGATG	2 cut(s)	147, 397
BseLI	CCNNNNNNNGG	2 cut(s)	270, 532
BseMII	CTCAG	2 cut(s)	189, 435
BseNI	ACTGG	1 cut(s)	646
BseXI	GCAGC	4 cut(s)	120, 172, 202, 533
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	612
BshVI	ATCGAT	1 cut(s)	631
BsiEI	CGRYCG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	2 cut(s)	270, 532
BsmAI	GTCTC	3 cut(s)	259, 456, 563
BsmBI	CGTCTC	1 cut(s)	456
BsmFI	GGGAC	1 cut(s)	560
BsnI	GGCC	1 cut(s)	612
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	5 cut(s)	24, 346, 505, 628, 632
BspACI	CCGC	4 cut(s)	30, 43, 76, 99
BspANI	GGCC	1 cut(s)	612
BspCNI	CTCAG	2 cut(s)	188, 436
BspDI	ATCGAT	1 cut(s)	631
BspLI	GGNNCC	1 cut(s)	576
BspPI	GGATC	2 cut(s)	341, 627
BsrBI	CCGCTC	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	646
BssMI	GATC	5 cut(s)	24, 346, 505, 628, 632
BssSI	CACGAG	1 cut(s)	587
Bst2BI	CACGAG	1 cut(s)	587
Bst6I	CTCTTC	1 cut(s)	426
BstC8I	GCNNGC	2 cut(s)	544, 614
BstDEI	CTNAG	2 cut(s)	175, 444
BstF5I	GGATG	2 cut(s)	147, 397
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	5 cut(s)	27, 349, 508, 631, 635
BstMAI	GTCTC	3 cut(s)	259, 456, 563
BstMBI	GATC	5 cut(s)	24, 346, 505, 628, 632
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 49, 105, 114, 603
BstV1I	GCAGC	4 cut(s)	120, 172, 202, 533
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
Bsu15I	ATCGAT	1 cut(s)	631
BsuRI	GGCC	1 cut(s)	612
BsuTUI	ATCGAT	1 cut(s)	631
BtsCI	GGATG	2 cut(s)	147, 397
BtsI	GCAGTG	1 cut(s)	613
BtsIMutI	CAGTG	2 cut(s)	613, 639
Cac8I	GCNNGC	2 cut(s)	544, 614
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	523, 574
ClaI	ATCGAT	1 cut(s)	631
CspCI	CAANNNNNGTGG	2 cut(s)	589, 624
CviAII	CATG	6 cut(s)	16, 134, 527, 562, 571, 651
DdeI	CTNAG	2 cut(s)	175, 444
DpnI	GATC	5 cut(s)	26, 348, 507, 630, 634
DpnII	GATC	5 cut(s)	24, 346, 505, 628, 632
DraI	TTTAAA	1 cut(s)	291
DrdI	GACNNNNNNGTC	1 cut(s)	448
DseDI	GACNNNNNNGTC	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	610
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	480
Eco47I	GGWCC	2 cut(s)	523, 574
EcoT38I	GRGCYC	1 cut(s)	480
Esp3I	CGTCTC	1 cut(s)	456
FaeI	CATG	6 cut(s)	19, 137, 530, 565, 574, 654
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	6 cut(s)	15, 133, 526, 561, 570, 650
Fnu4HI	GCNGC	5 cut(s)	30, 109, 186, 191, 547
FokI	GGATG	2 cut(s)	154, 404
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	5 cut(s)	30, 109, 186, 191, 547
FspI	TGCGCA	1 cut(s)	189
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	5 cut(s)	30, 109, 186, 191, 547
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	612
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	6 cut(s)	19, 137, 530, 565, 574, 654
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	4 cut(s)	130, 434, 446, 500
HphI	GGTGA	3 cut(s)	104, 311, 639
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	6 cut(s)	12, 178, 391, 505, 510, 637
Hpy188III	TCNNGA	3 cut(s)	38, 236, 465
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	1 cut(s)	160
HpyAV	CCTTC	2 cut(s)	144, 490
HpyCH4V	TGCA	3 cut(s)	52, 549, 606
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 49, 105, 114, 603
HpyF3I	CTNAG	2 cut(s)	175, 444
Hsp92II	CATG	6 cut(s)	19, 137, 530, 565, 574, 654
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	5 cut(s)	24, 346, 505, 628, 632
LmnI	GCTCC	5 cut(s)	13, 40, 65, 264, 422
LpnPI	CCDG	8 cut(s)	23, 92, 221, 506, 518, 528, 626, 627
Lsp1109I	GCAGC	4 cut(s)	120, 172, 202, 533
LweI	GCATC	2 cut(s)	41, 172
MaeIII	GTNAC	3 cut(s)	92, 101, 380
MalI	GATC	5 cut(s)	26, 348, 507, 630, 634
MbiI	CCGCTC	1 cut(s)	43
MboI	GATC	5 cut(s)	24, 346, 505, 628, 632
MboII	GAAGA	5 cut(s)	356, 429, 443, 450, 453
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	480
MlsI	TGGCCA	1 cut(s)	612
MluCI	AATT	2 cut(s)	200, 316
MluNI	TGGCCA	1 cut(s)	612
MlyI	GAGTC	3 cut(s)	139, 443, 455
MnlI	CCTC	7 cut(s)	140, 175, 184, 217, 293, 315, 583
Mox20I	TGGCCA	1 cut(s)	612
MroXI	GAANNNNTTC	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	612
MseI	TTAA	2 cut(s)	65, 290
Msp20I	TGGCCA	1 cut(s)	612
MwoI	GCNNNNNNNGC	5 cut(s)	26, 49, 105, 114, 603
NdeII	GATC	5 cut(s)	24, 346, 505, 628, 632
NlaIII	CATG	6 cut(s)	19, 137, 530, 565, 574, 654
NlaIV	GGNNCC	1 cut(s)	576
NmuCI	GTSAC	1 cut(s)	92
NsbI	TGCGCA	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	446
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	500
PflFI	GACNNNGTC	1 cut(s)	445
PflMI	CCANNNNNTGG	1 cut(s)	532
PkrI	GCNGC	5 cut(s)	31, 110, 187, 192, 548
Ple19I	CGATCG	1 cut(s)	27
PleI	GAGTC	3 cut(s)	138, 442, 454
PpsI	GAGTC	3 cut(s)	138, 442, 454
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	2 cut(s)	523, 574
PsuI	RGATCY	1 cut(s)	346
PsyI	GACNNNGTC	1 cut(s)	445
PvuI	CGATCG	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	65, 290
SatI	GCNGC	5 cut(s)	30, 109, 186, 191, 547
Sau3AI	GATC	5 cut(s)	24, 346, 505, 628, 632
Sau96I	GGNCC	2 cut(s)	523, 574
SchI	GAGTC	3 cut(s)	139, 443, 455
SduI	GDGCHC	1 cut(s)	480
SetI	ASST	7 cut(s)	10, 155, 167, 176, 211, 419, 618
SfaNI	GCATC	2 cut(s)	41, 172
SinI	GGWCC	2 cut(s)	523, 574
Sse9I	AATT	2 cut(s)	200, 316
SsiI	CCGC	4 cut(s)	30, 43, 76, 99
TaqI	TCGA	4 cut(s)	128, 285, 440, 631
TasI	AATT	2 cut(s)	200, 316
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	2 cut(s)	65, 290
Tru9I	TTAA	2 cut(s)	65, 290
TscAI	CASTG	2 cut(s)	613, 646
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	4 cut(s)	108, 185, 190, 546
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	347
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	2 cut(s)	613, 646
Tth111I	GACNNNGTC	1 cut(s)	445
Van91I	CCANNNNNTGG	1 cut(s)	532
VpaK11BI	GGWCC	2 cut(s)	523, 574
XmnI	GAANNNNTTC	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.