Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0010108

Physical Location & Seq

Genomic Coordinates Reverse (-)

46819959 .. 46822534

Gene Structure 2576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG296700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGACAGCTCCGAACATGGCGACGATCGCTGCATCTCTGGAGAGGTCTCTGCAAAACTGTTCCTTAAACCACCGCCAGACCACCATCGCCGGCGGTGGCGGTAACGGTAGCCGTAGCAGTCAAGGGTCGAGTCATGTTGGGATGAGAAGGTCGTCGTCAACCTCATCAACCTCAGACGATGCGCAGCAGAATCAATTCATGCCCGACAACAACAATGAGGACACGGCTCTGGAGCTCAACTCCCATGTCTCGCTTCCCTACCATTGGGAACAATGCCTCGATTTAAAGACGGGTGAGATTTACTACATAAATTGGAGGAACGGAATGAAAGCGAAAGAAGATCCTAGAACAGCAGCACAATACAGCGGAGACTGTTACTACTCGGATGATGATGATAATAGCTCCTATGATAGCGAAGAGTCTTCGACTGAGTCGTCTCCACCTTCTTCAAGAGAGAGAGAGCCCTATAATAATCAGCAGCAGAAGGAATCAGATCAGAATAATAAGCAGGACCATGTTCTGGTTGTGGCTGGCTGCAAATCGTGTCTCATGTATTACATGGTCCCCAAACAGCACGAGGATTGCCCCAAATGCAGTGGCCAGCTTCTCCACTTCGATCGATCCGAAAGCGGCTCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.69

Weight (kDa)

4.91

Isoelectric Point (pI)

71.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28070 AT2G33510 AT2G33510
fragaria_vesca	FvH4_4g23070
malus_domestica	MD13G1126400.v1.1 MD16G1126900.v1.1
prunus_persica	Prupe.1G219000_v2.0.a1
pyrus_communis	pycom13g10990 pycom16g10770
rosa_chinensis	RchiOBHm_Chr4g0429341
rosa_laevigata	RLG00000007079
rosa_multiflora	Rmu_co8435519.1_g000001 Rmu_sc0000054.1_g000001 Rmu_sc0003904.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370950
rosa_rugosa	Rorug04G0235200
rosa_samantha	Rh4AG290800 Rh4BG296700 Rh4CG312300 Rh4DG293700
rosa_wichuraiana	Rw4G025190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	433
Acc16I	TGCGCA	1 cut(s)	183
AccB7I	CCANNNNNTGG	1 cut(s)	520
AciI	CCGC	5 cut(s)	73, 93, 99, 366, 630
AclWI	GGATC	2 cut(s)	335, 615
AcoI	YGGCCR	1 cut(s)	598
AfiI	CCNNNNNNNGG	2 cut(s)	264, 520
AgsI	TTSAA	1 cut(s)	450
AluBI	AGCT	4 cut(s)	8, 235, 402, 604
AluI	AGCT	4 cut(s)	8, 235, 402, 604
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	5 cut(s)	51, 253, 363, 441, 551
AlwI	GGATC	2 cut(s)	335, 615
AoxI	GGCC	1 cut(s)	598
ApeKI	GCWGC	5 cut(s)	29, 184, 353, 478, 534
Asp700I	GAANNNNTTC	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	2 cut(s)	511, 562
AsuHPI	GGTGA	2 cut(s)	305, 627
AvaII	GGWCC	2 cut(s)	511, 562
BalI	TGGCCA	1 cut(s)	600
BanII	GRGCYC	2 cut(s)	237, 465
BauI	CACGAG	1 cut(s)	575
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	5 cut(s)	16, 196, 365, 490, 521
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	2 cut(s)	96, 240
BcoDI	GTCTC	5 cut(s)	51, 253, 363, 441, 551
BfaI	CTAG	1 cut(s)	345
BisI	GCNGC	6 cut(s)	30, 185, 354, 479, 535, 631
BlsI	GCNGC	6 cut(s)	31, 186, 355, 480, 536, 632
Bme18I	GGWCC	2 cut(s)	511, 562
BmgT120I	GGNCC	2 cut(s)	511, 562
BmiI	GGNNCC	1 cut(s)	564
BmsI	GCATC	2 cut(s)	41, 169
BpiI	GAAGAC	1 cut(s)	414
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BpmI	CTGGAG	2 cut(s)	59, 251
Bsa29I	ATCGAT	1 cut(s)	619
BsaI	GGTCTC	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 520
Bse118I	RCCGGY	1 cut(s)	89
BseCI	ATCGAT	1 cut(s)	619
BseGI	GGATG	2 cut(s)	147, 391
BseLI	CCNNNNNNNGG	2 cut(s)	264, 520
BseMII	CTCAG	2 cut(s)	186, 420
BseXI	GCAGC	5 cut(s)	16, 196, 365, 490, 521
Bsh1285I	CGRYCG	2 cut(s)	27, 619
BshFI	GGCC	1 cut(s)	600
BshVI	ATCGAT	1 cut(s)	619
BsiEI	CGRYCG	2 cut(s)	27, 619
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	548
BslI	CCNNNNNNNGG	2 cut(s)	264, 520
BsmAI	GTCTC	5 cut(s)	51, 253, 363, 441, 551
BsmBI	CGTCTC	1 cut(s)	441
BsmFI	GGGAC	1 cut(s)	548
BsnI	GGCC	1 cut(s)	600
Bso31I	GGTCTC	1 cut(s)	51
Bsp1286I	GDGCHC	2 cut(s)	237, 465
Bsp143I	GATC	5 cut(s)	24, 340, 493, 616, 620
BspACI	CCGC	5 cut(s)	73, 93, 99, 366, 630
BspANI	GGCC	1 cut(s)	600
BspCNI	CTCAG	2 cut(s)	185, 421
BspDI	ATCGAT	1 cut(s)	619
BspLI	GGNNCC	1 cut(s)	564
BspPI	GGATC	2 cut(s)	335, 615
BspTNI	GGTCTC	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	89
BssMI	GATC	5 cut(s)	24, 340, 493, 616, 620
BssSI	CACGAG	1 cut(s)	575
Bst2BI	CACGAG	1 cut(s)	575
Bst4CI	ACNGT	3 cut(s)	59, 107, 374
Bst6I	CTCTTC	1 cut(s)	411
BstC8I	GCNNGC	3 cut(s)	91, 532, 602
BstDEI	CTNAG	2 cut(s)	172, 429
BstF5I	GGATG	2 cut(s)	147, 391
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	5 cut(s)	27, 343, 496, 619, 623
BstMAI	GTCTC	5 cut(s)	51, 253, 363, 441, 551
BstMBI	GATC	5 cut(s)	24, 340, 493, 616, 620
BstMCI	CGRYCG	2 cut(s)	27, 619
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 591
BstV1I	GCAGC	5 cut(s)	16, 196, 365, 490, 521
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
Bsu15I	ATCGAT	1 cut(s)	619
BsuRI	GGCC	1 cut(s)	600
BsuTUI	ATCGAT	1 cut(s)	619
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	147, 391
BtsI	GCAGTG	1 cut(s)	601
BtsIMutI	CAGTG	1 cut(s)	601
Cac8I	GCNNGC	3 cut(s)	91, 532, 602
CfoI	GCGC	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	511, 562
ClaI	ATCGAT	1 cut(s)	619
CspCI	CAANNNNNGTGG	2 cut(s)	577, 612
CviAII	CATG	8 cut(s)	16, 134, 199, 245, 515, 550, 559, 639
DdeI	CTNAG	2 cut(s)	172, 429
DpnI	GATC	5 cut(s)	26, 342, 495, 618, 622
DpnII	GATC	5 cut(s)	24, 340, 493, 616, 620
DraI	TTTAAA	1 cut(s)	285
DrdI	GACNNNNNNGTC	1 cut(s)	433
DseDI	GACNNNNNNGTC	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	598
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Ecl136II	GAGCTC	1 cut(s)	235
Eco24I	GRGCYC	2 cut(s)	237, 465
Eco31I	GGTCTC	1 cut(s)	51
Eco47I	GGWCC	2 cut(s)	511, 562
Eco53kI	GAGCTC	1 cut(s)	235
EcoICRI	GAGCTC	1 cut(s)	235
EcoT38I	GRGCYC	2 cut(s)	237, 465
Esp3I	CGTCTC	1 cut(s)	441
FaeI	CATG	8 cut(s)	19, 137, 202, 248, 518, 553, 562, 642
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	8 cut(s)	15, 133, 198, 244, 514, 549, 558, 638
Fnu4HI	GCNGC	6 cut(s)	30, 185, 354, 479, 535, 631
FokI	GGATG	2 cut(s)	154, 398
FriOI	GRGCYC	2 cut(s)	237, 465
Fsp4HI	GCNGC	6 cut(s)	30, 185, 354, 479, 535, 631
FspBI	CTAG	1 cut(s)	345
FspI	TGCGCA	1 cut(s)	183
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	6 cut(s)	30, 185, 354, 479, 535, 631
GsuI	CTGGAG	2 cut(s)	59, 251
HaeIII	GGCC	1 cut(s)	600
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	8 cut(s)	19, 137, 202, 248, 518, 553, 562, 642
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	5 cut(s)	130, 190, 419, 431, 488
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	2 cut(s)	305, 627
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	6 cut(s)	12, 175, 385, 493, 498, 625
Hpy188III	TCNNGA	3 cut(s)	38, 230, 450
Hpy8I	GTNNAC	1 cut(s)	159
Hpy99I	CGWCG	2 cut(s)	25, 157
HpyAV	CCTTC	3 cut(s)	141, 453, 478
HpyCH4III	ACNGT	3 cut(s)	59, 107, 374
HpyCH4V	TGCA	4 cut(s)	32, 52, 537, 594
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 591
HpyF3I	CTNAG	2 cut(s)	172, 429
Hsp92II	CATG	8 cut(s)	19, 137, 202, 248, 518, 553, 562, 642
HspAI	GCGC	1 cut(s)	182
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Kzo9I	GATC	5 cut(s)	24, 340, 493, 616, 620
LmnI	GCTCC	3 cut(s)	13, 232, 407
LpnPI	CCDG	8 cut(s)	23, 89, 103, 215, 494, 506, 516, 614
Lsp1109I	GCAGC	5 cut(s)	16, 196, 365, 490, 521
LweI	GCATC	2 cut(s)	41, 169
MaeI	CTAG	1 cut(s)	345
MaeIII	GTNAC	2 cut(s)	101, 374
MalI	GATC	5 cut(s)	26, 342, 495, 618, 622
MboI	GATC	5 cut(s)	24, 340, 493, 616, 620
MboII	GAAGA	4 cut(s)	350, 414, 428, 438
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	2 cut(s)	237, 465
MlsI	TGGCCA	1 cut(s)	600
MluCI	AATT	2 cut(s)	194, 310
MluNI	TGGCCA	1 cut(s)	600
MlyI	GAGTC	3 cut(s)	139, 428, 440
MnlI	CCTC	7 cut(s)	36, 172, 181, 211, 287, 309, 571
Mox20I	TGGCCA	1 cut(s)	600
MreI	CGCCGGCG	1 cut(s)	89
MroNI	GCCGGC	1 cut(s)	89
MroXI	GAANNNNTTC	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	600
MseI	TTAA	2 cut(s)	65, 284
Msp20I	TGGCCA	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	366
MspI	CCGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	26, 591
NaeI	GCCGGC	1 cut(s)	91
NdeII	GATC	5 cut(s)	24, 340, 493, 616, 620
NgoMIV	GCCGGC	1 cut(s)	89
NlaIII	CATG	8 cut(s)	19, 137, 202, 248, 518, 553, 562, 642
NlaIV	GGNNCC	1 cut(s)	564
NsbI	TGCGCA	1 cut(s)	183
PcsI	WCGNNNNNNNCGW	2 cut(s)	431, 621
PdiI	GCCGGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	190, 488
PflFI	GACNNNGTC	1 cut(s)	430
PflMI	CCANNNNNTGG	1 cut(s)	520
PkrI	GCNGC	6 cut(s)	31, 186, 355, 480, 536, 632
Ple19I	CGATCG	2 cut(s)	27, 619
PleI	GAGTC	3 cut(s)	138, 427, 439
PpsI	GAGTC	3 cut(s)	138, 427, 439
Psp124BI	GAGCTC	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	564
PspPI	GGNCC	2 cut(s)	511, 562
PsuI	RGATCY	1 cut(s)	340
PsyI	GACNNNGTC	1 cut(s)	430
PvuI	CGATCG	2 cut(s)	27, 619
SacI	GAGCTC	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	65, 284
SatI	GCNGC	6 cut(s)	30, 185, 354, 479, 535, 631
Sau3AI	GATC	5 cut(s)	24, 340, 493, 616, 620
Sau96I	GGNCC	2 cut(s)	511, 562
SchI	GAGTC	3 cut(s)	139, 428, 440
SduI	GDGCHC	2 cut(s)	237, 465
SetI	ASST	9 cut(s)	10, 47, 152, 164, 173, 237, 404, 445, 606
SfaNI	GCATC	2 cut(s)	41, 169
SgrAI	CRCCGGYG	1 cut(s)	89
SinI	GGWCC	2 cut(s)	511, 562
Sse9I	AATT	2 cut(s)	194, 310
SsiI	CCGC	5 cut(s)	73, 93, 99, 366, 630
SspMI	CTAG	1 cut(s)	345
SstI	GAGCTC	1 cut(s)	237
TaaI	ACNGT	3 cut(s)	59, 107, 374
TaqI	TCGA	5 cut(s)	128, 279, 425, 615, 619
TasI	AATT	2 cut(s)	194, 310
TauI	GCSGC	1 cut(s)	633
TfiI	GAWTC	2 cut(s)	190, 488
Tru1I	TTAA	2 cut(s)	65, 284
Tru9I	TTAA	2 cut(s)	65, 284
TscAI	CASTG	1 cut(s)	601
TseI	GCWGC	5 cut(s)	29, 184, 353, 478, 534
TspDTI	ATGAA	2 cut(s)	187, 341
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	1 cut(s)	601
Tth111I	GACNNNGTC	1 cut(s)	430
Van91I	CCANNNNNTGG	1 cut(s)	520
VpaK11BI	GGWCC	2 cut(s)	511, 562
XmnI	GAANNNNTTC	1 cut(s)	194
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.