Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0010108

Physical Location & Seq

Genomic Coordinates Forward (+)

9236538 .. 9238380

Gene Structure 1843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1126900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGACAGCTCCAAACATGGAGACGATCGCCGCTTCTCTGGAGAGGTCTCTCCAAAATTGCTCCCTAAACAACCACAACCACAACCACCACCACCACAACCACAGCAACAGCGGCGGCGGCAGCGTAACAGTCGACGGCGAAGGACAAGGCTCGAGCGTCACCGACGGGGTATTGGCCGCCACGGGGATGCAGGGCAGGTCATCGTCTTCAACCTCATCAACCTCAGACGCCGCTTTAGAGCTCAACTCCCATGTCTCCCTTCCATACCATTGGGAACAATGCCTCGATTTGAAGACTGGGGAGATATACTACATAAACTGGAGGAACGGGATGAAGGCGAAAGAAGATCCGAAGACAGGAGGAGAGTACAGTGGAGATTTCTACTACTCGGAAGAAGATGAAAACAGCTCGTATGACAGCGAAGAGTCTTCGACCGAGTCGTCGCCATCTTCGTGCAGATACGAGCAGCACCAGCAGCCGGTAGAGAATCTCAACAGCAACAACAATAATAATAATGTGTTGGTAGTGGCTGGCTGCAAAGCCTGTCTCATGTATTTCATGGTCCCGAAACAGCTCGAGGACTGCCCCAAATGCTCCGGTCAACTTCTCCACTTCGATCGATCCGAAAATGGCTCCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

23.3

Weight (kDa)

4.91

Isoelectric Point (pI)

61.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28070 AT2G33510 AT2G33510
fragaria_vesca	FvH4_4g23070
malus_domestica	MD13G1126400.v1.1 MD16G1126900.v1.1
prunus_persica	Prupe.1G219000_v2.0.a1
pyrus_communis	pycom13g10990 pycom16g10770
rosa_chinensis	RchiOBHm_Chr4g0429341
rosa_laevigata	RLG00000007079
rosa_multiflora	Rmu_co8435519.1_g000001 Rmu_sc0000054.1_g000001 Rmu_sc0003904.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370950
rosa_rugosa	Rorug04G0235200
rosa_samantha	Rh4AG290800 Rh4BG296700 Rh4CG312300 Rh4DG293700
rosa_wichuraiana	Rw4G025190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	439
Acc36I	ACCTGC	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	132
AciI	CCGC	6 cut(s)	30, 111, 114, 117, 177, 231
AclWI	GGATC	2 cut(s)	341, 615
AcoI	YGGCCR	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	3 cut(s)	183, 356, 478
AgsI	TTSAA	2 cut(s)	210, 292
AluBI	AGCT	4 cut(s)	8, 241, 408, 574
AluI	AGCT	4 cut(s)	8, 241, 408, 574
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	4 cut(s)	14, 51, 259, 551
AlwI	GGATC	2 cut(s)	341, 615
Ama87I	CYCGRG	2 cut(s)	151, 575
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	4 cut(s)	120, 466, 475, 534
AspS9I	GGNCC	1 cut(s)	562
AsuHPI	GGTGA	1 cut(s)	151
AvaI	CYCGRG	2 cut(s)	151, 575
AvaII	GGWCC	1 cut(s)	562
BanII	GRGCYC	1 cut(s)	243
BbsI	GAAGAC	4 cut(s)	198, 299, 359, 420
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	4 cut(s)	132, 478, 487, 521
BccI	CCATC	1 cut(s)	454
BceAI	ACGGC	1 cut(s)	151
BcoDI	GTCTC	4 cut(s)	14, 51, 259, 551
BfuAI	ACCTGC	1 cut(s)	186
Bme18I	GGWCC	1 cut(s)	562
BmeT110I	CYCGRG	2 cut(s)	151, 575
BmgT120I	GGNCC	1 cut(s)	562
BmiI	GGNNCC	2 cut(s)	564, 634
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	177
BmuI	ACTGGG	1 cut(s)	306
BpiI	GAAGAC	4 cut(s)	198, 299, 359, 420
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
BpmI	CTGGAG	2 cut(s)	59, 340
Bsa29I	ATCGAT	1 cut(s)	619
BsaHI	GRCGYC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	596
Bsc4I	CCNNNNNNNGG	3 cut(s)	183, 356, 478
Bse118I	RCCGGY	1 cut(s)	478
Bse1I	ACTGG	2 cut(s)	301, 323
BseCI	ATCGAT	1 cut(s)	619
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	2 cut(s)	192, 336
BseLI	CCNNNNNNNGG	3 cut(s)	183, 356, 478
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	2 cut(s)	301, 323
BseRI	GAGGAG	1 cut(s)	375
BseXI	GCAGC	4 cut(s)	132, 478, 487, 521
BsgI	GTGCAG	1 cut(s)	475
Bsh1285I	CGRYCG	3 cut(s)	27, 435, 619
BshFI	GGCC	1 cut(s)	176
BshVI	ATCGAT	1 cut(s)	619
BsiEI	CGRYCG	3 cut(s)	27, 435, 619
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	2 cut(s)	151, 575
BsiSI	CCGG	2 cut(s)	479, 597
BslFI	GGGAC	1 cut(s)	548
BslI	CCNNNNNNNGG	3 cut(s)	183, 356, 478
BsmAI	GTCTC	4 cut(s)	14, 51, 259, 551
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	548
BsnI	GGCC	1 cut(s)	176
Bso31I	GGTCTC	1 cut(s)	51
BsoBI	CYCGRG	2 cut(s)	151, 575
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	4 cut(s)	24, 346, 616, 620
BspACI	CCGC	6 cut(s)	30, 111, 114, 117, 177, 231
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	236
BspDI	ATCGAT	1 cut(s)	619
BspLI	GGNNCC	2 cut(s)	564, 634
BspMI	ACCTGC	1 cut(s)	186
BspPI	GGATC	2 cut(s)	341, 615
BspTNI	GGTCTC	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	478
BsrI	ACTGG	2 cut(s)	301, 323
BssAI	RCCGGY	1 cut(s)	478
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	4 cut(s)	24, 346, 616, 620
BssNI	GRCGYC	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	130, 371
Bst6I	CTCTTC	1 cut(s)	417
BstACI	GRCGYC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	532
BstDEI	CTNAG	1 cut(s)	223
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	192, 336
BstKTI	GATC	4 cut(s)	27, 349, 619, 623
BstMAI	GTCTC	4 cut(s)	14, 51, 259, 551
BstMBI	GATC	4 cut(s)	24, 346, 616, 620
BstMCI	CGRYCG	3 cut(s)	27, 435, 619
BstMWI	GCNNNNNNNGC	6 cut(s)	111, 117, 120, 472, 475, 591
BstV1I	GCAGC	4 cut(s)	132, 478, 487, 521
BstV2I	GAAGAC	4 cut(s)	198, 299, 359, 420
BstX2I	RGATCY	1 cut(s)	346
BstXI	CCANNNNNNTGG	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	346
Bsu15I	ATCGAT	1 cut(s)	619
BsuRI	GGCC	1 cut(s)	176
BsuTUI	ATCGAT	1 cut(s)	619
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	192, 336
BtsIMutI	CAGTG	1 cut(s)	376
BveI	ACCTGC	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	532
Cfr10I	RCCGGY	1 cut(s)	478
Cfr13I	GGNCC	1 cut(s)	562
ClaI	ATCGAT	1 cut(s)	619
CseI	GACGC	2 cut(s)	145, 236
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	5 cut(s)	16, 251, 550, 559, 639
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	4 cut(s)	26, 348, 618, 622
DpnII	GATC	4 cut(s)	24, 346, 616, 620
DrdI	GACNNNNNNGTC	1 cut(s)	439
DseDI	GACNNNNNNGTC	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Ecl136II	GAGCTC	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	243
Eco31I	GGTCTC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	562
Eco53kI	GAGCTC	1 cut(s)	241
Eco88I	CYCGRG	2 cut(s)	151, 575
EcoICRI	GAGCTC	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	5 cut(s)	19, 254, 553, 562, 642
FaiI	YATR	9 cut(s)	17, 252, 265, 307, 314, 414, 551, 560, 640
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	5 cut(s)	15, 250, 549, 558, 638
FblI	GTMKAC	1 cut(s)	132
FokI	GGATG	2 cut(s)	199, 343
FriOI	GRGCYC	1 cut(s)	243
GsuI	CTGGAG	2 cut(s)	59, 340
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	2 cut(s)	479, 597
HgaI	GACGC	2 cut(s)	145, 236
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	5 cut(s)	19, 254, 553, 562, 642
HincII	GTYRAC	2 cut(s)	133, 602
HindII	GTYRAC	2 cut(s)	133, 602
HinfI	GANTC	3 cut(s)	425, 437, 487
HpaII	CCGG	2 cut(s)	479, 597
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	2 cut(s)	133, 602
Hpy188I	TCNGA	4 cut(s)	226, 351, 391, 625
Hpy188III	TCNNGA	2 cut(s)	38, 565
Hpy8I	GTNNAC	2 cut(s)	133, 602
Hpy99I	CGWCG	3 cut(s)	137, 167, 445
HpyAV	CCTTC	3 cut(s)	134, 269, 328
HpyCH4III	ACNGT	2 cut(s)	130, 371
HpyCH4V	TGCA	3 cut(s)	190, 456, 537
HpyF10VI	GCNNNNNNNGC	6 cut(s)	111, 117, 120, 472, 475, 591
HpyF3I	CTNAG	1 cut(s)	223
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	5 cut(s)	19, 254, 553, 562, 642
Kzo9I	GATC	4 cut(s)	24, 346, 616, 620
LmnI	GCTCC	4 cut(s)	13, 65, 599, 638
Lsp1109I	GCAGC	4 cut(s)	132, 478, 487, 521
LweI	GCATC	1 cut(s)	177
MaeIII	GTNAC	2 cut(s)	124, 157
MalI	GATC	4 cut(s)	26, 348, 618, 622
MboI	GATC	4 cut(s)	24, 346, 616, 620
MboII	GAAGA	9 cut(s)	198, 304, 356, 364, 404, 407, 420, 434, 441
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	1 cut(s)	55
MlyI	GAGTC	2 cut(s)	434, 446
MnlI	CCTC	7 cut(s)	36, 223, 232, 293, 315, 353, 571
MslI	CAYNNNNRTG	2 cut(s)	185, 451
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	2 cut(s)	479, 597
MwoI	GCNNNNNNNGC	6 cut(s)	111, 117, 120, 472, 475, 591
NdeII	GATC	4 cut(s)	24, 346, 616, 620
NlaIII	CATG	5 cut(s)	19, 254, 553, 562, 642
NlaIV	GGNNCC	2 cut(s)	564, 634
NmuCI	GTSAC	1 cut(s)	157
PaeR7I	CTCGAG	2 cut(s)	151, 575
PcsI	WCGNNNNNNNCGW	3 cut(s)	437, 449, 621
PfeI	GAWTC	1 cut(s)	487
PflFI	GACNNNGTC	1 cut(s)	436
Ple19I	CGATCG	2 cut(s)	27, 619
PleI	GAGTC	2 cut(s)	433, 445
PpsI	GAGTC	2 cut(s)	433, 445
Psp124BI	GAGCTC	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	564, 634
PspPI	GGNCC	1 cut(s)	562
PspXI	VCTCGAGB	2 cut(s)	151, 575
PsuI	RGATCY	1 cut(s)	346
PsyI	GACNNNGTC	1 cut(s)	436
PvuI	CGATCG	2 cut(s)	27, 619
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
RseI	CAYNNNNRTG	2 cut(s)	185, 451
SacI	GAGCTC	1 cut(s)	243
SalI	GTCGAC	1 cut(s)	131
Sau3AI	GATC	4 cut(s)	24, 346, 616, 620
Sau96I	GGNCC	1 cut(s)	562
SchI	GAGTC	2 cut(s)	434, 446
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	8 cut(s)	10, 47, 200, 215, 224, 243, 410, 576
SfaNI	GCATC	1 cut(s)	177
Sfr274I	CTCGAG	2 cut(s)	151, 575
SinI	GGWCC	1 cut(s)	562
SlaI	CTCGAG	2 cut(s)	151, 575
SmiMI	CAYNNNNRTG	2 cut(s)	185, 451
SmlI	CTYRAG	2 cut(s)	151, 575
SmoI	CTYRAG	2 cut(s)	151, 575
Sse9I	AATT	1 cut(s)	55
SsiI	CCGC	6 cut(s)	30, 111, 114, 117, 177, 231
SstI	GAGCTC	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	130, 371
TaqI	TCGA	7 cut(s)	132, 152, 285, 431, 576, 615, 619
TaqII	GACCGA	1 cut(s)	449
TasI	AATT	1 cut(s)	55
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	6 cut(s)	32, 114, 117, 120, 179, 233
TfiI	GAWTC	1 cut(s)	487
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	4 cut(s)	120, 466, 475, 534
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	3 cut(s)	347, 414, 547
TspRI	CASTG	1 cut(s)	376
Tth111I	GACNNNGTC	1 cut(s)	436
VpaK11BI	GGWCC	1 cut(s)	562
XhoI	CTCGAG	2 cut(s)	151, 575
XmiI	GTMKAC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.