AT2G33793

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014040
Physical Location & Seq
Forward (+)
14296962 .. 14300577
3616 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G33793.3

Sequence Viewer

Length: 639 bp
ATGTCGTCTACCAGAAGAGGCACTAAGAGAACTCGGCCAGAGCCGCCGCAATCGCTCAAGAAGCCAACACCGAAAGCAAAACTCCCGGACGAATTGGATGTCGATGTTTCTAGCGATTTCAAAGGAATCATGTCGGCGTTGCAGCAATTCAGAGAGAAAGCGCACGAAGATGGCCGTAAGAAGAAGGAAGAAAGCATTTCCAGTGTGTCCACTGAGGTGAAGTCAAAGATTGACGAGCTGAAGTCAAAACTTGAGAAAGAAAGACAAAACTTTTCCAAAGCACTTTCAAAGAGTTCAAAGGAGTGTGAGAATATTTTGAAGGATGAAGCTGCCAAGTTTGAGGAGCTTCATAAGAAATTCGTGAAAGACAAAGCTGATCATCTACAAGGCTTGAAAGACACTATTTCAAAGTTTGAGGAGGACAAGGAGAGGCTCTACATGCGATATGAGCAGCTAAGGAAGAAGGAGAAGACAATGATAACGGAACAGGAGAAGTTCTGCACTGAAAAGCTTGCTCAATTGGAAGAGTCACTGAAGAAAAAGAAACGGGGTGACAAAACTTTCAGCATACTGAGGAAAACTCTCGGCTCTTTTCTGGAAAACGAGGCTTCTGATGAGGAATTCCCACCTGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.69

Weight (kDa)

9.04

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ASY3-like PF20435 3 - 130 1.2e-06 Meiosis-specific protein ASY3-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33793 AT2G33793 AT2G33793
fragaria_vesca FvH4_3g09320
malus_domestica MD05G1313300.v1.1
prunus_persica Prupe.4G046300_v2.0.a1
pyrus_communis pycom05g29130
rosa_chinensis RchiOBHm_Chr5g0008281
rosa_laevigata RLG00000031558
rosa_roxburghii Rroxscaffold_1G00055470 Rroxscaffold_1G00068180
rosa_rugosa Rorug04G0434700
rosa_samantha Rh5AG063400 Rh5BG059900 Rh5CG070200 Rh5DG059400
rosa_wichuraiana Rw5G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 8
AciI CCGC 2 cut(s) 44, 47
AcoI YGGCCR 2 cut(s) 35, 172
AcsI RAATTY 2 cut(s) 356, 620
AcuI CTGAAG 2 cut(s) 260, 554
AgsI TTSAA 6 cut(s) 121, 288, 297, 319, 394, 408
AleI CACNNNNGTG 1 cut(s) 215
AluBI AGCT 6 cut(s) 238, 329, 346, 374, 454, 511
AluI AGCT 6 cut(s) 238, 329, 346, 374, 454, 511
AoxI GGCC 2 cut(s) 35, 172
ApeKI GCWGC 3 cut(s) 142, 329, 451
ApoI RAATTY 2 cut(s) 356, 620
ArsI GACNNNNNNTTYG 2 cut(s) 84, 116
AspLEI GCGC 1 cut(s) 163
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 229, 563
BbsI GAAGAC 1 cut(s) 476
BbvI GCAGC 3 cut(s) 154, 316, 463
BccI CCATC 1 cut(s) 164
BceAI ACGGC 1 cut(s) 159
BclI TGATCA 1 cut(s) 376
BcnI CCSGG 1 cut(s) 86
BfaI CTAG 1 cut(s) 111
BisI GCNGC 5 cut(s) 44, 47, 143, 330, 452
BlsI GCNGC 5 cut(s) 45, 48, 144, 331, 453
Bme1390I CCNGG 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 476
BplI GAGNNNNNCTC 2 cut(s) 565, 597
Bpu10I CCTNAGC 1 cut(s) 455
BpuEI CTTGAG 2 cut(s) 41, 272
BpuMI CCSGG 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 201
BseGI GGATG 2 cut(s) 103, 328
BseMII CTCAG 2 cut(s) 204, 563
BseNI ACTGG 1 cut(s) 201
BseRI GAGGAG 2 cut(s) 356, 431
BseXI GCAGC 3 cut(s) 154, 316, 463
BsgI GTGCAG 1 cut(s) 484
BshFI GGCC 2 cut(s) 37, 174
BsiSI CCGG 1 cut(s) 86
BsnI GGCC 2 cut(s) 37, 174
Bsp143I GATC 1 cut(s) 376
BspACI CCGC 2 cut(s) 44, 47
BspANI GGCC 2 cut(s) 37, 174
BspCNI CTCAG 2 cut(s) 205, 564
BsrI ACTGG 1 cut(s) 201
BssMI GATC 1 cut(s) 376
Bst6I CTCTTC 2 cut(s) 10, 519
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 4 cut(s) 24, 213, 455, 572
BstF5I GGATG 2 cut(s) 103, 328
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 1 cut(s) 379
BstMBI GATC 1 cut(s) 376
BstMWI GCNNNNNNNGC 5 cut(s) 43, 52, 61, 439, 448
BstNSI RCATGY 1 cut(s) 442
BstSCI CCNGG 1 cut(s) 84
BstV1I GCAGC 3 cut(s) 154, 316, 463
BstV2I GAAGAC 1 cut(s) 476
BsuRI GGCC 2 cut(s) 37, 174
BtsCI GGATG 2 cut(s) 103, 328
BtsIMutI CAGTG 4 cut(s) 208, 210, 501, 530
Cac8I GCNNGC 1 cut(s) 513
CfoI GCGC 1 cut(s) 163
CviAII CATG 2 cut(s) 130, 439
DdeI CTNAG 4 cut(s) 24, 213, 455, 572
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
EaeI YGGCCR 2 cut(s) 35, 172
Eam1104I CTCTTC 2 cut(s) 10, 519
EarI CTCTTC 2 cut(s) 10, 519
Eco57I CTGAAG 2 cut(s) 260, 554
EcoRI GAATTC 1 cut(s) 620
FaeI CATG 2 cut(s) 133, 442
FaiI YATR 5 cut(s) 131, 351, 440, 447, 569
FatI CATG 2 cut(s) 129, 438
FbaI TGATCA 1 cut(s) 376
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 5 cut(s) 44, 47, 143, 330, 452
FokI GGATG 2 cut(s) 110, 335
Fsp4HI GCNGC 5 cut(s) 44, 47, 143, 330, 452
FspBI CTAG 1 cut(s) 111
GlaI GCGC 1 cut(s) 162
GluI GCNGC 5 cut(s) 44, 47, 143, 330, 452
HaeIII GGCC 2 cut(s) 37, 174
HapII CCGG 1 cut(s) 86
HhaI GCGC 1 cut(s) 163
Hin1II CATG 2 cut(s) 133, 442
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 2 cut(s) 126, 527
HpaII CCGG 1 cut(s) 86
HphI GGTGA 2 cut(s) 229, 563
Hpy166II GTNNAC 2 cut(s) 9, 210
Hpy188I TCNGA 2 cut(s) 152, 613
Hpy188III TCNNGA 3 cut(s) 58, 361, 596
Hpy8I GTNNAC 2 cut(s) 9, 210
HpyAV CCTTC 3 cut(s) 178, 313, 457
HpyCH4V TGCA 2 cut(s) 142, 501
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 52, 61, 439, 448
HpyF3I CTNAG 4 cut(s) 24, 213, 455, 572
Hsp92II CATG 2 cut(s) 133, 442
HspAI GCGC 1 cut(s) 161
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 1 cut(s) 376
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 6 cut(s) 25, 51, 99, 214, 473, 581
Lsp1109I GCAGC 3 cut(s) 154, 316, 463
MaeI CTAG 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 528, 551
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 8 cut(s) 27, 179, 193, 200, 472, 481, 536, 547
MfeI CAATTG 1 cut(s) 518
MluCI AATT 5 cut(s) 92, 146, 356, 518, 620
MlyI GAGTC 1 cut(s) 536
MnlI CCTC 9 cut(s) 11, 208, 334, 409, 412, 423, 567, 598, 610
MslI CAYNNNNRTG 2 cut(s) 168, 215
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 86
MunI CAATTG 1 cut(s) 518
MwoI GCNNNNNNNGC 5 cut(s) 43, 52, 61, 439, 448
NciI CCSGG 1 cut(s) 86
NdeII GATC 1 cut(s) 376
NlaIII CATG 2 cut(s) 133, 442
NmeAIII GCCGAG 2 cut(s) 13, 564
NmuCI GTSAC 2 cut(s) 528, 551
NspI RCATGY 1 cut(s) 442
OliI CACNNNNGTG 1 cut(s) 215
PfeI GAWTC 1 cut(s) 126
PfoI TCCNGGA 1 cut(s) 84
PkrI GCNGC 5 cut(s) 45, 48, 144, 331, 453
PleI GAGTC 1 cut(s) 535
PpsI GAGTC 1 cut(s) 535
RseI CAYNNNNRTG 2 cut(s) 168, 215
SatI GCNGC 5 cut(s) 44, 47, 143, 330, 452
Sau3AI GATC 1 cut(s) 376
SchI GAGTC 1 cut(s) 536
ScrFI CCNGG 1 cut(s) 86
SetI ASST 8 cut(s) 219, 240, 331, 348, 376, 456, 513, 631
SmiMI CAYNNNNRTG 2 cut(s) 168, 215
SmlI CTYRAG 2 cut(s) 56, 251
SmoI CTYRAG 2 cut(s) 56, 251
Sse9I AATT 5 cut(s) 92, 146, 356, 518, 620
SsiI CCGC 2 cut(s) 44, 47
SspI AATATT 1 cut(s) 313
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 84
TaqI TCGA 1 cut(s) 102
TasI AATT 5 cut(s) 92, 146, 356, 518, 620
TauI GCSGC 2 cut(s) 46, 49
TfiI GAWTC 1 cut(s) 126
TscAI CASTG 4 cut(s) 208, 217, 508, 537
TseFI GTSAC 2 cut(s) 528, 551
TseI GCWGC 3 cut(s) 142, 329, 451
Tsp45I GTSAC 2 cut(s) 528, 551
TspDTI ATGAA 2 cut(s) 338, 339
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 4 cut(s) 208, 217, 508, 537
XapI RAATTY 2 cut(s) 356, 620
XceI RCATGY 1 cut(s) 442
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.