FvH4_3g09320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014040
Physical Location & Seq
Reverse (-)
5442163 .. 5444566
2404 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09320.t1

Sequence Viewer

Length: 624 bp
ATGTCCACCGCCAAAGCCACCACCAGGAAGAGGCGCGCGGCCGAGCCTGAGCTCACCAAATCGGCCGACCTCGATCTCTATATCGACCTCTCCAGTGATATCAAAGGAATCATGTCGGCGCTGCAACAGATCCGAGAGAAGGCGCACAAGGACGGCTTGAAGAAGAACGAAGAGACCATTTCCAGTGTGGCTGCTGAAGTCAGGTCTGTGATTGATGAACTGAAGTCGAAAGTTGAGAAGGACAGGCAAAGTTTTGCGAAATCACTTTCAAAGAGCTCAAAAGAGTGTGAGAATTGCTTGAAGATTGAAACGACTAAGTTCCAAGCAGTTTATGAGAAATTCTGCAAGGATCAAGCGAACCATCTACAAACCCTGAAAGGTATCATTTCAAACTTTGAAGAAGAGAAGGAAAGGCTATTCACTCGATATGAGCAACTGAGAAAGAGAGAAAGAACTATGATATCAGAGCATGAAAAGGCTTGCACCGATAAAATTTCAAAGTTGGAAGAGTCTCTGAAAAAGAAGAAGCAGGACAACAAAACTTTCAGCGTTTTGAGGAAAACTCTGGGTTCATTTCTGGACGATGATGCTTCAGATGAAGAAGGCGTCCCACTTGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

23.72

Weight (kDa)

8.21

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33793 AT2G33793 AT2G33793
fragaria_vesca FvH4_3g09320
malus_domestica MD05G1313300.v1.1
prunus_persica Prupe.4G046300_v2.0.a1
pyrus_communis pycom05g29130
rosa_chinensis RchiOBHm_Chr5g0008281
rosa_laevigata RLG00000031558
rosa_roxburghii Rroxscaffold_1G00055470 Rroxscaffold_1G00068180
rosa_rugosa Rorug04G0434700
rosa_samantha Rh5AG063400 Rh5BG059900 Rh5CG070200 Rh5DG059400
rosa_wichuraiana Rw5G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 36, 38
AciI CCGC 2 cut(s) 9, 38
AclWI GGATC 2 cut(s) 124, 357
AcoI YGGCCR 2 cut(s) 39, 63
AcsI RAATTY 2 cut(s) 338, 492
AcuI CTGAAG 3 cut(s) 216, 242, 576
AcyI GRCGYC 1 cut(s) 606
AfiI CCNNNNNNNGG 3 cut(s) 24, 30, 139
AgsI TTSAA 7 cut(s) 160, 270, 301, 308, 390, 398, 498
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 2 cut(s) 52, 276
AluI AGCT 2 cut(s) 52, 276
Alw21I GWGCWC 2 cut(s) 54, 278
Alw26I GTCTC 2 cut(s) 167, 516
AlwI GGATC 2 cut(s) 124, 357
AoxI GGCC 2 cut(s) 39, 63
ApeKI GCWGC 2 cut(s) 121, 191
ApoI RAATTY 2 cut(s) 338, 492
AspLEI GCGC 4 cut(s) 36, 38, 121, 145
AsuHPI GGTGA 1 cut(s) 46
BanII GRGCYC 2 cut(s) 54, 278
Bbv12I GWGCWC 2 cut(s) 54, 278
BbvI GCAGC 2 cut(s) 108, 178
BccI CCATC 1 cut(s) 369
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 25
BcoDI GTCTC 2 cut(s) 167, 516
BfoI RGCGCY 1 cut(s) 122
BisI GCNGC 3 cut(s) 39, 122, 192
BlsI GCNGC 3 cut(s) 40, 123, 193
Bme1390I CCNGG 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 577
BplI GAGNNNNNCTC 2 cut(s) 547, 579
BpmI CTGGAG 1 cut(s) 76
Bpu10I CCTNAGC 1 cut(s) 48
BsaHI GRCGYC 1 cut(s) 606
BsaI GGTCTC 1 cut(s) 167
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 30, 139
Bse1I ACTGG 2 cut(s) 93, 183
BseBI CCWGG 1 cut(s) 25
BseLI CCNNNNNNNGG 3 cut(s) 24, 30, 139
BseMII CTCAG 2 cut(s) 39, 428
BseNI ACTGG 2 cut(s) 93, 183
BsePI GCGCGC 1 cut(s) 34
BseX3I CGGCCG 2 cut(s) 39, 63
BseXI GCAGC 2 cut(s) 108, 178
Bsh1236I CGCG 2 cut(s) 36, 38
Bsh1285I CGRYCG 2 cut(s) 42, 66
BshFI GGCC 2 cut(s) 41, 65
BsiEI CGRYCG 2 cut(s) 42, 66
BsiHKAI GWGCWC 2 cut(s) 54, 278
BslFI GGGAC 1 cut(s) 593
BslI CCNNNNNNNGG 3 cut(s) 24, 30, 139
BsmAI GTCTC 2 cut(s) 167, 516
BsmFI GGGAC 1 cut(s) 593
BsnI GGCC 2 cut(s) 41, 65
Bso31I GGTCTC 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 54, 278
Bsp143I GATC 3 cut(s) 73, 129, 349
BspACI CCGC 2 cut(s) 9, 38
BspANI GGCC 2 cut(s) 41, 65
BspCNI CTCAG 2 cut(s) 40, 429
BspFNI CGCG 2 cut(s) 36, 38
BspPI GGATC 2 cut(s) 124, 357
BspTNI GGTCTC 1 cut(s) 167
BsrI ACTGG 2 cut(s) 93, 183
BssHII GCGCGC 1 cut(s) 34
BssMI GATC 3 cut(s) 73, 129, 349
BssNI GRCGYC 1 cut(s) 606
Bst2UI CCWGG 1 cut(s) 25
Bst6I CTCTTC 4 cut(s) 23, 165, 396, 501
BstACI GRCGYC 1 cut(s) 606
BstC8I GCNNGC 2 cut(s) 36, 481
BstDEI CTNAG 3 cut(s) 48, 315, 437
BstFNI CGCG 2 cut(s) 36, 38
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 4 cut(s) 36, 38, 121, 145
BstKTI GATC 3 cut(s) 76, 132, 352
BstMAI GTCTC 2 cut(s) 167, 516
BstMBI GATC 3 cut(s) 73, 129, 349
BstMCI CGRYCG 2 cut(s) 42, 66
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 23
BstUI CGCG 2 cut(s) 36, 38
BstV1I GCAGC 2 cut(s) 108, 178
BstX2I RGATCY 1 cut(s) 129
BstYI RGATCY 1 cut(s) 129
BstZI CGGCCG 2 cut(s) 39, 63
BsuRI GGCC 2 cut(s) 41, 65
BtsIMutI CAGTG 2 cut(s) 100, 190
Cac8I GCNNGC 2 cut(s) 36, 481
CfoI GCGC 4 cut(s) 36, 38, 121, 145
CseI GACGC 1 cut(s) 595
CviAII CATG 2 cut(s) 112, 470
DdeI CTNAG 3 cut(s) 48, 315, 437
DpnI GATC 3 cut(s) 75, 131, 351
DpnII GATC 3 cut(s) 73, 129, 349
EaeI YGGCCR 2 cut(s) 39, 63
EagI CGGCCG 2 cut(s) 39, 63
Eam1104I CTCTTC 4 cut(s) 23, 165, 396, 501
EarI CTCTTC 4 cut(s) 23, 165, 396, 501
Ecl136II GAGCTC 2 cut(s) 52, 276
EclXI CGGCCG 2 cut(s) 39, 63
Eco24I GRGCYC 2 cut(s) 54, 278
Eco31I GGTCTC 1 cut(s) 167
Eco32I GATATC 2 cut(s) 100, 462
Eco52I CGGCCG 2 cut(s) 39, 63
Eco53kI GAGCTC 2 cut(s) 52, 276
Eco57I CTGAAG 3 cut(s) 216, 242, 576
EcoICRI GAGCTC 2 cut(s) 52, 276
EcoRII CCWGG 1 cut(s) 23
EcoRV GATATC 2 cut(s) 100, 462
EcoT38I GRGCYC 2 cut(s) 54, 278
FaeI CATG 2 cut(s) 115, 473
FaiI YATR 6 cut(s) 81, 113, 333, 429, 458, 471
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FaqI GGGAC 1 cut(s) 593
FatI CATG 2 cut(s) 111, 469
Fnu4HI GCNGC 3 cut(s) 39, 122, 192
FriOI GRGCYC 2 cut(s) 54, 278
Fsp4HI GCNGC 3 cut(s) 39, 122, 192
GlaI GCGC 4 cut(s) 35, 37, 120, 144
GluI GCNGC 3 cut(s) 39, 122, 192
GsuI CTGGAG 1 cut(s) 76
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 2 cut(s) 41, 65
HgaI GACGC 1 cut(s) 595
HhaI GCGC 4 cut(s) 36, 38, 121, 145
Hin1I GRCGYC 1 cut(s) 606
Hin1II CATG 2 cut(s) 115, 473
Hin6I GCGC 4 cut(s) 34, 36, 119, 143
HinP1I GCGC 4 cut(s) 34, 36, 119, 143
HinfI GANTC 2 cut(s) 108, 509
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 4 cut(s) 134, 466, 516, 595
Hpy188III TCNNGA 1 cut(s) 578
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 4 cut(s) 133, 232, 400, 596
HpyCH4V TGCA 3 cut(s) 124, 345, 483
HpyF3I CTNAG 3 cut(s) 48, 315, 437
Hsp92I GRCGYC 1 cut(s) 606
Hsp92II CATG 2 cut(s) 115, 473
HspAI GCGC 4 cut(s) 34, 36, 119, 143
Kzo9I GATC 3 cut(s) 73, 129, 349
Lsp1109I GCAGC 2 cut(s) 108, 178
LweI GCATC 1 cut(s) 577
MalI GATC 3 cut(s) 75, 131, 351
MboI GATC 3 cut(s) 73, 129, 349
MflI RGATCY 1 cut(s) 129
MhlI GDGCHC 2 cut(s) 54, 278
MluCI AATT 3 cut(s) 292, 338, 492
MlyI GAGTC 1 cut(s) 518
MmeI TCCRAC 1 cut(s) 483
MnlI CCTC 4 cut(s) 24, 80, 98, 549
MspR9I CCNGG 1 cut(s) 25
MvaI CCWGG 1 cut(s) 25
MvnI CGCG 2 cut(s) 36, 38
NdeII GATC 3 cut(s) 73, 129, 349
NlaIII CATG 2 cut(s) 115, 473
NmeAIII GCCGAG 1 cut(s) 67
PauI GCGCGC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 108
PkrI GCNGC 3 cut(s) 40, 123, 193
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
Psp124BI GAGCTC 2 cut(s) 54, 278
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PsuI RGATCY 1 cut(s) 129
PteI GCGCGC 1 cut(s) 34
SacI GAGCTC 2 cut(s) 54, 278
SatI GCNGC 3 cut(s) 39, 122, 192
Sau3AI GATC 3 cut(s) 73, 129, 349
SchI GAGTC 1 cut(s) 518
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 2 cut(s) 54, 278
SetI ASST 6 cut(s) 54, 72, 90, 206, 278, 382
SfaNI GCATC 1 cut(s) 577
Sse9I AATT 3 cut(s) 292, 338, 492
SsiI CCGC 2 cut(s) 9, 38
SstI GAGCTC 2 cut(s) 54, 278
StyD4I CCNGG 1 cut(s) 23
TaqI TCGA 4 cut(s) 72, 84, 227, 424
TasI AATT 3 cut(s) 292, 338, 492
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 1 cut(s) 108
TscAI CASTG 2 cut(s) 100, 190
TseI GCWGC 2 cut(s) 121, 191
TspDTI ATGAA 4 cut(s) 231, 486, 561, 612
TspRI CASTG 2 cut(s) 100, 190
XapI RAATTY 2 cut(s) 338, 492
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.