Rroxscaffold_1G00055470

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
76916945 .. 76919350
2406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00055470.1

Sequence Viewer

Length: 237 bp
ATGTCGTCTCTGCAACAGATCCGAGAGAAGGCGCACAAGGATGGCCTCAAGAAGAACGAAGAGACCATTTCCAGTATGGCTGCTGAAGTCAGGTCCGTGATTGATGAACTGAAGTCGAAAGTTGAGAAAGACAGACAAAGTTTTGCGAAATCGCTTTCAAAGAGCTCGAAAGAGTGCGGGAATTGCTTGAAGACTGAAACTACCAAGTTCCAAGCAGTTTATGAGAAATTCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.85

Weight (kDa)

9.05

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33793 AT2G33793 AT2G33793
fragaria_vesca FvH4_3g09320
malus_domestica MD05G1313300.v1.1
prunus_persica Prupe.4G046300_v2.0.a1
pyrus_communis pycom05g29130
rosa_chinensis RchiOBHm_Chr5g0008281
rosa_laevigata RLG00000031558
rosa_roxburghii Rroxscaffold_1G00055470 Rroxscaffold_1G00068180
rosa_rugosa Rorug04G0434700
rosa_samantha Rh5AG063400 Rh5BG059900 Rh5CG070200 Rh5DG059400
rosa_wichuraiana Rw5G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 177
AclWI GGATC 1 cut(s) 13
AcsI RAATTY 1 cut(s) 227
AcuI CTGAAG 2 cut(s) 105, 131
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 2 cut(s) 159, 190
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 2 cut(s) 12, 56
AlwI GGATC 1 cut(s) 13
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 227
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 93
AvaII GGWCC 1 cut(s) 93
BanII GRGCYC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 35
BcoDI GTCTC 2 cut(s) 12, 56
BfaI CTAG 1 cut(s) 235
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 72
BseXI GCAGC 1 cut(s) 67
BshFI GGCC 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 2 cut(s) 12, 56
BsmBI CGTCTC 1 cut(s) 12
BsnI GGCC 1 cut(s) 45
Bso31I GGTCTC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 1 cut(s) 18
BspACI CCGC 1 cut(s) 177
BspANI GGCC 1 cut(s) 45
BspPI GGATC 1 cut(s) 13
BspTNI GGTCTC 1 cut(s) 56
BsrI ACTGG 1 cut(s) 72
BssMI GATC 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 54
BstF5I GGATG 1 cut(s) 46
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 1 cut(s) 21
BstMAI GTCTC 2 cut(s) 12, 56
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 1 cut(s) 46
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 93
CviJI RGCY 3 cut(s) 45, 80, 165
CviKI_1 RGCY 3 cut(s) 45, 80, 165
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Ecl136II GAGCTC 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 93
Eco53kI GAGCTC 1 cut(s) 165
Eco57I CTGAAG 2 cut(s) 105, 131
EcoICRI GAGCTC 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 167
Esp3I CGTCTC 1 cut(s) 12
FaiI YATR 2 cut(s) 77, 222
FauI CCCGC 1 cut(s) 170
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 53
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 235
GlaI GCGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 45
HhaI GCGC 1 cut(s) 34
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
Hpy188I TCNGA 1 cut(s) 23
Hpy188III TCNNGA 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 22
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HspAI GCGC 1 cut(s) 32
Kzo9I GATC 1 cut(s) 18
LpnPI CCDG 2 cut(s) 76, 85
Lsp1109I GCAGC 1 cut(s) 67
MaeI CTAG 1 cut(s) 235
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 3 cut(s) 64, 71, 202
MflI RGATCY 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 2 cut(s) 181, 227
MnlI CCTC 1 cut(s) 56
MslI CAYNNNNRTG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 183
NdeII GATC 1 cut(s) 18
PkrI GCNGC 1 cut(s) 82
Psp124BI GAGCTC 1 cut(s) 167
PspPI GGNCC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 18
RseI CAYNNNNRTG 1 cut(s) 39
SacI GAGCTC 1 cut(s) 167
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 1 cut(s) 93
SduI GDGCHC 1 cut(s) 167
SetI ASST 2 cut(s) 95, 167
SinI GGWCC 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 2 cut(s) 181, 227
SsiI CCGC 1 cut(s) 177
SspMI CTAG 1 cut(s) 235
SstI GAGCTC 1 cut(s) 167
TaqI TCGA 2 cut(s) 116, 167
TasI AATT 2 cut(s) 181, 227
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 120
TspGWI ACGGA 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 93
XapI RAATTY 1 cut(s) 227
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XspI CTAG 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.