Rh5CG070200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014040
Physical Location & Seq
Forward (+)
5279388 .. 5281666
2279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG070200.1

Sequence Viewer

Length: 603 bp
ATGTCCACCGCCAAAGCCACCACCAGGAAGAGGCGCGCGGCCGAGCCCGAGCTCGCCAAATCGGCCAACCTCGATCTCGATCTCGATCTCGACCTCTCCAGTGATATCAAAGGAATCATGTCGGCTCTGCAACAGATCAGAGAGAAGGCGCACAAGGACGGACTCAAGAAGAACGAAGAGACCATTTCCAGTGTGGCTTCTGAAGTCAGGTTTGTGATTGATGAACTGAAGTCGAAAGTTGAGAAGGACAGGCAAAGTTTCGCGAAATCACTTTCAAAGAGCTCAAAAGAGTGTGAGAATTGCTTGAAGACTGAAACTACCAAGTTCCAAGCAGTTTATGAGAAATTCTGCAAGGATCAAGCGAACCATCTACAATCCCTGAAAGGTATCATTTCAAACTTTGAAGAAGAGAAGGAAAGGCTATTCACTCGATATGAGCAACTCAGAAAGAGAGAGAGAACTATGATATCAGAGCATGAAAAAGCTTGCACTGATAAAATTTCCAAGTTAGAAGAGTCTCTGAAAAAGAAGAAGCAGGTACTGTTTCTCTCAGATCTCTCTGTATATCTATCTATGTGTGTGATTTGTATAAACATGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.97

Weight (kDa)

8.91

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ASY3-like PF20435 21 - 167 1.7e-07 Meiosis-specific protein ASY3-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33793 AT2G33793 AT2G33793
fragaria_vesca FvH4_3g09320
malus_domestica MD05G1313300.v1.1
prunus_persica Prupe.4G046300_v2.0.a1
pyrus_communis pycom05g29130
rosa_chinensis RchiOBHm_Chr5g0008281
rosa_laevigata RLG00000031558
rosa_roxburghii Rroxscaffold_1G00055470 Rroxscaffold_1G00068180
rosa_rugosa Rorug04G0434700
rosa_samantha Rh5AG063400 Rh5BG059900 Rh5CG070200 Rh5DG059400
rosa_wichuraiana Rw5G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 526
AccII CGCG 3 cut(s) 36, 38, 263
AciI CCGC 2 cut(s) 9, 38
AclWI GGATC 1 cut(s) 363
AcoI YGGCCR 2 cut(s) 39, 63
AcsI RAATTY 2 cut(s) 344, 498
AcuI CTGAAG 2 cut(s) 222, 248
AfaI GTAC 1 cut(s) 540
AfiI CCNNNNNNNGG 2 cut(s) 24, 30
AflIII ACRYGT 1 cut(s) 594
AgsI TTSAA 4 cut(s) 276, 307, 396, 404
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 3 cut(s) 52, 282, 485
AluI AGCT 3 cut(s) 52, 282, 485
Alw21I GWGCWC 2 cut(s) 54, 284
Alw26I GTCTC 2 cut(s) 173, 522
AlwI GGATC 1 cut(s) 363
AlwNI CAGNNNCTG 1 cut(s) 541
Ama87I CYCGRG 1 cut(s) 47
AoxI GGCC 2 cut(s) 39, 63
ApoI RAATTY 2 cut(s) 344, 498
AspLEI GCGC 3 cut(s) 36, 38, 151
AvaI CYCGRG 1 cut(s) 47
BanII GRGCYC 3 cut(s) 48, 54, 284
BbsI GAAGAC 1 cut(s) 314
Bbv12I GWGCWC 2 cut(s) 54, 284
BccI CCATC 1 cut(s) 375
BciT130I CCWGG 1 cut(s) 25
BcoDI GTCTC 2 cut(s) 173, 522
BfuAI ACCTGC 1 cut(s) 526
BglI GCCNNNNNGGC 1 cut(s) 62
BglII AGATCT 1 cut(s) 553
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 314
BpmI CTGGAG 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 149
BsaBI GATNNNNATC 2 cut(s) 78, 84
BsaI GGTCTC 1 cut(s) 173
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 30
Bse1I ACTGG 2 cut(s) 99, 189
Bse8I GATNNNNATC 2 cut(s) 78, 84
BseBI CCWGG 1 cut(s) 25
BseJI GATNNNNATC 2 cut(s) 78, 84
BseLI CCNNNNNNNGG 2 cut(s) 24, 30
BseMII CTCAG 2 cut(s) 457, 564
BseNI ACTGG 2 cut(s) 99, 189
BsePI GCGCGC 1 cut(s) 34
BseX3I CGGCCG 1 cut(s) 39
Bsh1236I CGCG 3 cut(s) 36, 38, 263
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 2 cut(s) 41, 65
BsiEI CGRYCG 1 cut(s) 42
BsiHKAI GWGCWC 2 cut(s) 54, 284
BsiHKCI CYCGRG 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 24, 30
BsmAI GTCTC 2 cut(s) 173, 522
BsnI GGCC 2 cut(s) 41, 65
Bso31I GGTCTC 1 cut(s) 173
BsoBI CYCGRG 1 cut(s) 47
Bsp1286I GDGCHC 3 cut(s) 48, 54, 284
Bsp143I GATC 6 cut(s) 73, 79, 85, 135, 355, 553
Bsp68I TCGCGA 1 cut(s) 263
BspACI CCGC 2 cut(s) 9, 38
BspANI GGCC 2 cut(s) 41, 65
BspCNI CTCAG 2 cut(s) 456, 563
BspFNI CGCG 3 cut(s) 36, 38, 263
BspMI ACCTGC 1 cut(s) 526
BspPI GGATC 1 cut(s) 363
BspTNI GGTCTC 1 cut(s) 173
BsrI ACTGG 2 cut(s) 99, 189
BssHII GCGCGC 1 cut(s) 34
BssMI GATC 6 cut(s) 73, 79, 85, 135, 355, 553
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 543
Bst6I CTCTTC 4 cut(s) 23, 171, 402, 507
BstC8I GCNNGC 3 cut(s) 36, 54, 487
BstDEI CTNAG 2 cut(s) 443, 550
BstFNI CGCG 3 cut(s) 36, 38, 263
BstHHI GCGC 3 cut(s) 36, 38, 151
BstKTI GATC 6 cut(s) 76, 82, 88, 138, 358, 556
BstMAI GTCTC 2 cut(s) 173, 522
BstMBI GATC 6 cut(s) 73, 79, 85, 135, 355, 553
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 25
BstNSI RCATGY 1 cut(s) 598
BstSCI CCNGG 1 cut(s) 23
BstUI CGCG 3 cut(s) 36, 38, 263
BstV2I GAAGAC 1 cut(s) 314
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BstZI CGGCCG 1 cut(s) 39
BsuRI GGCC 2 cut(s) 41, 65
BtsIMutI CAGTG 3 cut(s) 106, 196, 489
BtuMI TCGCGA 1 cut(s) 263
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 3 cut(s) 36, 54, 487
CaiI CAGNNNCTG 1 cut(s) 541
CfoI GCGC 3 cut(s) 36, 38, 151
Csp6I GTAC 1 cut(s) 539
CviAII CATG 3 cut(s) 118, 476, 595
CviQI GTAC 1 cut(s) 539
DdeI CTNAG 2 cut(s) 443, 550
DpnI GATC 6 cut(s) 75, 81, 87, 137, 357, 555
DpnII GATC 6 cut(s) 73, 79, 85, 135, 355, 553
EaeI YGGCCR 2 cut(s) 39, 63
EagI CGGCCG 1 cut(s) 39
Eam1104I CTCTTC 4 cut(s) 23, 171, 402, 507
EarI CTCTTC 4 cut(s) 23, 171, 402, 507
Ecl136II GAGCTC 2 cut(s) 52, 282
EclXI CGGCCG 1 cut(s) 39
Eco24I GRGCYC 3 cut(s) 48, 54, 284
Eco31I GGTCTC 1 cut(s) 173
Eco32I GATATC 2 cut(s) 106, 468
Eco52I CGGCCG 1 cut(s) 39
Eco53kI GAGCTC 2 cut(s) 52, 282
Eco57I CTGAAG 2 cut(s) 222, 248
Eco88I CYCGRG 1 cut(s) 47
EcoICRI GAGCTC 2 cut(s) 52, 282
EcoRII CCWGG 1 cut(s) 23
EcoRV GATATC 2 cut(s) 106, 468
EcoT38I GRGCYC 3 cut(s) 48, 54, 284
FaeI CATG 3 cut(s) 121, 479, 598
FaiI YATR 9 cut(s) 119, 339, 435, 464, 477, 565, 575, 590, 596
FatI CATG 3 cut(s) 117, 475, 594
Fnu4HI GCNGC 1 cut(s) 39
FriOI GRGCYC 3 cut(s) 48, 54, 284
Fsp4HI GCNGC 1 cut(s) 39
GlaI GCGC 3 cut(s) 35, 37, 150
GluI GCNGC 1 cut(s) 39
GsuI CTGGAG 1 cut(s) 82
HaeIII GGCC 2 cut(s) 41, 65
HhaI GCGC 3 cut(s) 36, 38, 151
Hin1II CATG 3 cut(s) 121, 479, 598
Hin6I GCGC 3 cut(s) 34, 36, 149
HinP1I GCGC 3 cut(s) 34, 36, 149
HindIII AAGCTT 1 cut(s) 483
HinfI GANTC 3 cut(s) 114, 162, 515
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 6 cut(s) 140, 202, 446, 472, 522, 553
Hpy188III TCNNGA 6 cut(s) 77, 83, 89, 166, 262, 600
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 3 cut(s) 139, 238, 406
HpyCH4III ACNGT 1 cut(s) 543
HpyCH4V TGCA 3 cut(s) 130, 351, 489
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 2 cut(s) 443, 550
Hsp92II CATG 3 cut(s) 121, 479, 598
HspAI GCGC 3 cut(s) 34, 36, 149
Kzo9I GATC 6 cut(s) 73, 79, 85, 135, 355, 553
LpnPI CCDG 8 cut(s) 10, 37, 112, 193, 202, 235, 392, 521
MalI GATC 6 cut(s) 75, 81, 87, 137, 357, 555
MboI GATC 6 cut(s) 73, 79, 85, 135, 355, 553
MboII GAAGA 8 cut(s) 40, 181, 188, 319, 416, 419, 524, 541
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 3 cut(s) 48, 54, 284
MluCI AATT 3 cut(s) 298, 344, 498
MlyI GAGTC 2 cut(s) 156, 524
MnlI CCTC 3 cut(s) 24, 80, 104
MspR9I CCNGG 1 cut(s) 25
MvaI CCWGG 1 cut(s) 25
MvnI CGCG 3 cut(s) 36, 38, 263
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 6 cut(s) 73, 79, 85, 135, 355, 553
NlaIII CATG 3 cut(s) 121, 479, 598
NmeAIII GCCGAG 1 cut(s) 67
NruI TCGCGA 1 cut(s) 263
NspI RCATGY 1 cut(s) 598
PauI GCGCGC 1 cut(s) 34
PciI ACATGT 1 cut(s) 594
PfeI GAWTC 1 cut(s) 114
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 2 cut(s) 156, 523
PpsI GAGTC 2 cut(s) 156, 523
PscI ACATGT 1 cut(s) 594
Psp124BI GAGCTC 2 cut(s) 54, 284
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PstNI CAGNNNCTG 1 cut(s) 541
PsuI RGATCY 1 cut(s) 553
PteI GCGCGC 1 cut(s) 34
RruI TCGCGA 1 cut(s) 263
RsaI GTAC 1 cut(s) 540
RsaNI GTAC 1 cut(s) 539
SacI GAGCTC 2 cut(s) 54, 284
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 6 cut(s) 73, 79, 85, 135, 355, 553
SchI GAGTC 2 cut(s) 156, 524
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 3 cut(s) 48, 54, 284
SetI ASST 8 cut(s) 54, 72, 96, 212, 284, 388, 487, 540
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 3 cut(s) 298, 344, 498
SsiI CCGC 2 cut(s) 9, 38
SstI GAGCTC 2 cut(s) 54, 284
StyD4I CCNGG 1 cut(s) 23
TaaI ACNGT 1 cut(s) 543
TaqI TCGA 6 cut(s) 72, 78, 84, 90, 233, 430
TasI AATT 3 cut(s) 298, 344, 498
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 1 cut(s) 114
TscAI CASTG 3 cut(s) 106, 196, 496
TspDTI ATGAA 2 cut(s) 237, 492
TspGWI ACGGA 1 cut(s) 174
TspRI CASTG 3 cut(s) 106, 196, 496
XapI RAATTY 2 cut(s) 344, 498
XceI RCATGY 1 cut(s) 598
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.