Rh5BG059900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0014040
Physical Location & Seq
Forward (+)
4922949 .. 4925258
2310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG059900.1

Sequence Viewer

Length: 612 bp
ATGTCCACCGCCAAAGCCACCACCAGGAAGAGGCCCGAGCTCGCCAAATCGGCCAACCTCGATCTCGATCTCGACCTCTCCAGTGATATCAAAGGAATCATGTCGGCGCTGCAACAGATCCGAGAGAAGGCGCACGAGGACGGCCTCAAGAAGAACGAAGAGACCATTTCCAGTGTGGCTGCTGAAGTCAGGTCTGCGATTGATGAACTGAAGTCGAAATTTGAGAAGGACAGGCAAAGTTTCGCGAAATCACTTTCAAAGAGCTCAAAAGAGTGTGAGAATTGCTTGAAGACTGAAACTACCAAGTTCCAAGCAGTTTACGAGAAATTCTGCAAGGATAAAGCTAACCATCTACAATCCCTGAAAGGTATCATTTCAAACTTTGAAGAAGAGAAGGAAAGGCTATTCACTCGATATGAGCAACTGAGAAAGAGAGAAAGGAGTGTGATAACAGAGCATGAAAAAGCTTGCACCGATAAAATTTCCAAGTTAGAAGAGTCTCTGAAAAAGAAGAAGCAGGACAACAAAACTTTCAGCGTTTTGAGGAAAACTCTTGGTTCATTTCTGGACGGCGATGCTTCAGACGAAGAAGACGTCCCACTTGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

23.17

Weight (kDa)

7.61

Isoelectric Point (pI)

53.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33793 AT2G33793 AT2G33793
fragaria_vesca FvH4_3g09320
malus_domestica MD05G1313300.v1.1
prunus_persica Prupe.4G046300_v2.0.a1
pyrus_communis pycom05g29130
rosa_chinensis RchiOBHm_Chr5g0008281
rosa_laevigata RLG00000031558
rosa_roxburghii Rroxscaffold_1G00055470 Rroxscaffold_1G00068180
rosa_rugosa Rorug04G0434700
rosa_samantha Rh5AG063400 Rh5BG059900 Rh5CG070200 Rh5DG059400
rosa_wichuraiana Rw5G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 597
AccII CGCG 1 cut(s) 245
AciI CCGC 1 cut(s) 9
AclWI GGATC 1 cut(s) 112
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 3 cut(s) 218, 326, 480
AcuI CTGAAG 3 cut(s) 204, 230, 564
AcyI GRCGYC 1 cut(s) 594
AfiI CCNNNNNNNGG 3 cut(s) 24, 30, 127
AgsI TTSAA 4 cut(s) 258, 289, 378, 386
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 4 cut(s) 40, 264, 344, 467
AluI AGCT 4 cut(s) 40, 264, 344, 467
Alw21I GWGCWC 2 cut(s) 42, 266
Alw26I GTCTC 2 cut(s) 155, 504
AlwI GGATC 1 cut(s) 112
Ama87I CYCGRG 1 cut(s) 35
AoxI GGCC 3 cut(s) 32, 51, 142
ApeKI GCWGC 2 cut(s) 109, 179
ApoI RAATTY 3 cut(s) 218, 326, 480
ArsI GACNNNNNNTTYG 2 cut(s) 579, 611
AspLEI GCGC 2 cut(s) 109, 133
AspS9I GGNCC 1 cut(s) 33
AvaI CYCGRG 1 cut(s) 35
BanII GRGCYC 2 cut(s) 42, 266
BauI CACGAG 1 cut(s) 134
BbsI GAAGAC 2 cut(s) 296, 597
Bbv12I GWGCWC 2 cut(s) 42, 266
BbvI GCAGC 2 cut(s) 96, 166
BccI CCATC 1 cut(s) 357
BceAI ACGGC 2 cut(s) 157, 586
BciT130I CCWGG 1 cut(s) 25
BcoDI GTCTC 2 cut(s) 155, 504
BfoI RGCGCY 1 cut(s) 110
BglI GCCNNNNNGGC 1 cut(s) 50
BisI GCNGC 2 cut(s) 110, 180
BlsI GCNGC 2 cut(s) 111, 181
Bme1390I CCNGG 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 565
BpiI GAAGAC 2 cut(s) 296, 597
BplI GAGNNNNNCTC 2 cut(s) 535, 567
BpmI CTGGAG 1 cut(s) 64
BpuEI CTTGAG 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 594
BsaI GGTCTC 1 cut(s) 155
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 30, 127
Bse1I ACTGG 2 cut(s) 81, 171
Bse8I GATNNNNATC 1 cut(s) 66
BseBI CCWGG 1 cut(s) 25
BseJI GATNNNNATC 1 cut(s) 66
BseLI CCNNNNNNNGG 3 cut(s) 24, 30, 127
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 2 cut(s) 81, 171
BseXI GCAGC 2 cut(s) 96, 166
Bsh1236I CGCG 1 cut(s) 245
BshFI GGCC 3 cut(s) 34, 53, 144
BsiHKAI GWGCWC 2 cut(s) 42, 266
BsiHKCI CYCGRG 1 cut(s) 35
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 3 cut(s) 24, 30, 127
BsmAI GTCTC 2 cut(s) 155, 504
BsmFI GGGAC 1 cut(s) 581
BsnI GGCC 3 cut(s) 34, 53, 144
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 2 cut(s) 42, 266
Bsp143I GATC 3 cut(s) 61, 67, 117
Bsp68I TCGCGA 1 cut(s) 245
BspACI CCGC 1 cut(s) 9
BspANI GGCC 3 cut(s) 34, 53, 144
BspCNI CTCAG 1 cut(s) 417
BspFNI CGCG 1 cut(s) 245
BspPI GGATC 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 155
BsrI ACTGG 2 cut(s) 81, 171
BssMI GATC 3 cut(s) 61, 67, 117
BssNI GRCGYC 1 cut(s) 594
BssSI CACGAG 1 cut(s) 134
Bst2BI CACGAG 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 25
Bst6I CTCTTC 4 cut(s) 23, 153, 384, 489
BstACI GRCGYC 1 cut(s) 594
BstC8I GCNNGC 2 cut(s) 42, 469
BstDEI CTNAG 1 cut(s) 425
BstFNI CGCG 1 cut(s) 245
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 2 cut(s) 109, 133
BstKTI GATC 3 cut(s) 64, 70, 120
BstMAI GTCTC 2 cut(s) 155, 504
BstMBI GATC 3 cut(s) 61, 67, 117
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 23
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 2 cut(s) 96, 166
BstV2I GAAGAC 2 cut(s) 296, 597
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
BsuRI GGCC 3 cut(s) 34, 53, 144
BtgZI GCGATG 1 cut(s) 588
BtsIMutI CAGTG 2 cut(s) 88, 178
BtuMI TCGCGA 1 cut(s) 245
Cac8I GCNNGC 2 cut(s) 42, 469
CfoI GCGC 2 cut(s) 109, 133
Cfr13I GGNCC 1 cut(s) 33
CviAII CATG 2 cut(s) 100, 458
DdeI CTNAG 1 cut(s) 425
DpnI GATC 3 cut(s) 63, 69, 119
DpnII GATC 3 cut(s) 61, 67, 117
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 4 cut(s) 23, 153, 384, 489
EarI CTCTTC 4 cut(s) 23, 153, 384, 489
Ecl136II GAGCTC 2 cut(s) 40, 264
Eco24I GRGCYC 2 cut(s) 42, 266
Eco31I GGTCTC 1 cut(s) 155
Eco32I GATATC 1 cut(s) 88
Eco53kI GAGCTC 2 cut(s) 40, 264
Eco57I CTGAAG 3 cut(s) 204, 230, 564
Eco88I CYCGRG 1 cut(s) 35
EcoICRI GAGCTC 2 cut(s) 40, 264
EcoRII CCWGG 1 cut(s) 23
EcoRV GATATC 1 cut(s) 88
EcoT38I GRGCYC 2 cut(s) 42, 266
FaeI CATG 2 cut(s) 103, 461
FaiI YATR 3 cut(s) 101, 417, 459
FaqI GGGAC 1 cut(s) 581
FatI CATG 2 cut(s) 99, 457
Fnu4HI GCNGC 2 cut(s) 110, 180
FriOI GRGCYC 2 cut(s) 42, 266
Fsp4HI GCNGC 2 cut(s) 110, 180
GlaI GCGC 2 cut(s) 108, 132
GluI GCNGC 2 cut(s) 110, 180
GsuI CTGGAG 1 cut(s) 64
HaeII RGCGCY 1 cut(s) 110
HaeIII GGCC 3 cut(s) 34, 53, 144
HhaI GCGC 2 cut(s) 109, 133
Hin1I GRCGYC 1 cut(s) 594
Hin1II CATG 2 cut(s) 103, 461
Hin6I GCGC 2 cut(s) 107, 131
HinP1I GCGC 2 cut(s) 107, 131
HindIII AAGCTT 1 cut(s) 465
HinfI GANTC 2 cut(s) 96, 497
Hpy166II GTNNAC 2 cut(s) 6, 319
Hpy188I TCNGA 3 cut(s) 122, 504, 583
Hpy188III TCNNGA 5 cut(s) 65, 71, 148, 244, 566
Hpy8I GTNNAC 2 cut(s) 6, 319
HpyAV CCTTC 3 cut(s) 121, 220, 388
HpyCH4IV ACGT 1 cut(s) 594
HpyCH4V TGCA 3 cut(s) 112, 333, 471
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 425
HpySE526I ACGT 1 cut(s) 594
Hsp92I GRCGYC 1 cut(s) 594
Hsp92II CATG 2 cut(s) 103, 461
HspAI GCGC 2 cut(s) 107, 131
Kzo9I GATC 3 cut(s) 61, 67, 117
LpnPI CCDG 9 cut(s) 10, 37, 94, 175, 184, 217, 374, 503, 551
Lsp1109I GCAGC 2 cut(s) 96, 166
LweI GCATC 1 cut(s) 565
MaeII ACGT 1 cut(s) 594
MalI GATC 3 cut(s) 63, 69, 119
MboI GATC 3 cut(s) 61, 67, 117
MflI RGATCY 1 cut(s) 117
MhlI GDGCHC 2 cut(s) 42, 266
MluCI AATT 4 cut(s) 218, 280, 326, 480
MlyI GAGTC 1 cut(s) 506
MnlI CCTC 6 cut(s) 24, 68, 86, 130, 155, 537
MspR9I CCNGG 1 cut(s) 25
MvaI CCWGG 1 cut(s) 25
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 3 cut(s) 61, 67, 117
NlaIII CATG 2 cut(s) 103, 461
NruI TCGCGA 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 591
PfeI GAWTC 1 cut(s) 96
PkrI GCNGC 2 cut(s) 111, 181
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
Psp124BI GAGCTC 2 cut(s) 42, 266
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspPI GGNCC 1 cut(s) 33
PsuI RGATCY 1 cut(s) 117
RruI TCGCGA 1 cut(s) 245
SacI GAGCTC 2 cut(s) 42, 266
SatI GCNGC 2 cut(s) 110, 180
Sau3AI GATC 3 cut(s) 61, 67, 117
Sau96I GGNCC 1 cut(s) 33
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 2 cut(s) 42, 266
SetI ASST 9 cut(s) 42, 60, 78, 194, 266, 346, 370, 469, 597
SfaNI GCATC 1 cut(s) 565
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 4 cut(s) 218, 280, 326, 480
SsiI CCGC 1 cut(s) 9
SstI GAGCTC 2 cut(s) 42, 266
StyD4I CCNGG 1 cut(s) 23
TaiI ACGT 1 cut(s) 597
TaqI TCGA 5 cut(s) 60, 66, 72, 215, 412
TasI AATT 4 cut(s) 218, 280, 326, 480
TfiI GAWTC 1 cut(s) 96
TscAI CASTG 2 cut(s) 88, 178
TseI GCWGC 2 cut(s) 109, 179
TspDTI ATGAA 3 cut(s) 219, 474, 549
TspRI CASTG 2 cut(s) 88, 178
XapI RAATTY 3 cut(s) 218, 326, 480
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
ZraI GACGTC 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.