RchiOBHm_Chr5g0008281

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0014040
Physical Location & Seq
Forward (+)
5290982 .. 5293168
2187 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28926

Sequence Viewer

Length: 624 bp
ATGTCCACCGCCAAAGCCACCACCAGGAAGAGGCGCGCGGCCGAGTCCGAGCTTGCCAAATCGGCCAACCTCGATCTCGATCTCGACCTCTCCAGTGATATCAAAGGAATCATGTCGGCTCTGCAACAGATCCGAGAGAAGGCGCACAAGGACGGACTCAAGAAGAACGAAGAGACCATTTCCAGTGTGGCTTCTGAAGTCAGGTTTGTGATTGATGAACTGAAGTCGAAAGTTGAGAAGGACAGGCAAAGTTTCGCGAAATCACTTTCAAAGAGCTCAAAAGAGTGTGAGAATTGCTTGAAGACTGAAACTACCAAGTTCCAAGCAGTTTACGAGAAATTCTGCAAGGATCAAGCGAACCATCTACAATCCCTGAAAGGTATCATTTCAAACTTTGAAGAAGAGAAGGAAAGGCTATTCACTCGATATGAGCAACTCAGAAAGAGAGAGAGAACTATGATATCAGAGCATGAAAAAGCTTGCACCGATAAAATTTCCAAGTTAGAAGAGTCTCTGAAAAAGAAGAAGCAGGACAACAAAACTTTCAGCGTTTTGAGGAAAACTCTTGGTTCATTTCTGGACGATGATGCTTCAGATGAAGAAGGCGTCCGACTTGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.74

Weight (kDa)

8.52

Isoelectric Point (pI)

50.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ASY3-like PF20435 29 - 177 4.7e-06 Meiosis-specific protein ASY3-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33793 AT2G33793 AT2G33793
fragaria_vesca FvH4_3g09320
malus_domestica MD05G1313300.v1.1
prunus_persica Prupe.4G046300_v2.0.a1
pyrus_communis pycom05g29130
rosa_chinensis RchiOBHm_Chr5g0008281
rosa_laevigata RLG00000031558
rosa_roxburghii Rroxscaffold_1G00055470 Rroxscaffold_1G00068180
rosa_rugosa Rorug04G0434700
rosa_samantha Rh5AG063400 Rh5BG059900 Rh5CG070200 Rh5DG059400
rosa_wichuraiana Rw5G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 36, 38, 257
AciI CCGC 2 cut(s) 9, 38
AclWI GGATC 2 cut(s) 124, 357
AcoI YGGCCR 2 cut(s) 39, 63
AcsI RAATTY 2 cut(s) 338, 492
AcuI CTGAAG 3 cut(s) 216, 242, 576
AcyI GRCGYC 1 cut(s) 606
AfiI CCNNNNNNNGG 3 cut(s) 24, 30, 139
AgsI TTSAA 4 cut(s) 270, 301, 390, 398
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 3 cut(s) 52, 276, 479
AluI AGCT 3 cut(s) 52, 276, 479
Alw21I GWGCWC 1 cut(s) 278
Alw26I GTCTC 2 cut(s) 167, 516
AlwI GGATC 2 cut(s) 124, 357
AoxI GGCC 2 cut(s) 39, 63
ApoI RAATTY 2 cut(s) 338, 492
AspLEI GCGC 3 cut(s) 36, 38, 145
BanII GRGCYC 1 cut(s) 278
BbsI GAAGAC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 278
BccI CCATC 1 cut(s) 369
BciT130I CCWGG 1 cut(s) 25
BcoDI GTCTC 2 cut(s) 167, 516
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 577
BpiI GAAGAC 1 cut(s) 308
BplI GAGNNNNNCTC 2 cut(s) 547, 579
BpmI CTGGAG 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 606
BsaI GGTCTC 1 cut(s) 167
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 30, 139
Bse1I ACTGG 2 cut(s) 93, 183
Bse8I GATNNNNATC 1 cut(s) 78
BseBI CCWGG 1 cut(s) 25
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 3 cut(s) 24, 30, 139
BseMII CTCAG 1 cut(s) 451
BseNI ACTGG 2 cut(s) 93, 183
BsePI GCGCGC 1 cut(s) 34
BseX3I CGGCCG 1 cut(s) 39
Bsh1236I CGCG 3 cut(s) 36, 38, 257
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 2 cut(s) 41, 65
BsiEI CGRYCG 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 278
BslI CCNNNNNNNGG 3 cut(s) 24, 30, 139
BsmAI GTCTC 2 cut(s) 167, 516
BsnI GGCC 2 cut(s) 41, 65
Bso31I GGTCTC 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 278
Bsp143I GATC 4 cut(s) 73, 79, 129, 349
Bsp68I TCGCGA 1 cut(s) 257
BspACI CCGC 2 cut(s) 9, 38
BspANI GGCC 2 cut(s) 41, 65
BspCNI CTCAG 1 cut(s) 450
BspFNI CGCG 3 cut(s) 36, 38, 257
BspPI GGATC 2 cut(s) 124, 357
BspTNI GGTCTC 1 cut(s) 167
BsrI ACTGG 2 cut(s) 93, 183
BssHII GCGCGC 1 cut(s) 34
BssMI GATC 4 cut(s) 73, 79, 129, 349
BssNI GRCGYC 1 cut(s) 606
Bst2UI CCWGG 1 cut(s) 25
Bst6I CTCTTC 4 cut(s) 23, 165, 396, 501
BstACI GRCGYC 1 cut(s) 606
BstC8I GCNNGC 3 cut(s) 36, 54, 481
BstDEI CTNAG 1 cut(s) 437
BstFNI CGCG 3 cut(s) 36, 38, 257
BstHHI GCGC 3 cut(s) 36, 38, 145
BstKTI GATC 4 cut(s) 76, 82, 132, 352
BstMAI GTCTC 2 cut(s) 167, 516
BstMBI GATC 4 cut(s) 73, 79, 129, 349
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 23
BstUI CGCG 3 cut(s) 36, 38, 257
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 1 cut(s) 129
BstYI RGATCY 1 cut(s) 129
BstZI CGGCCG 1 cut(s) 39
BsuRI GGCC 2 cut(s) 41, 65
BtsIMutI CAGTG 2 cut(s) 100, 190
BtuMI TCGCGA 1 cut(s) 257
Cac8I GCNNGC 3 cut(s) 36, 54, 481
CfoI GCGC 3 cut(s) 36, 38, 145
CseI GACGC 1 cut(s) 595
CviAII CATG 2 cut(s) 112, 470
CviJI RGCY 9 cut(s) 17, 41, 52, 65, 119, 191, 276, 415, 479
CviKI_1 RGCY 9 cut(s) 17, 41, 52, 65, 119, 191, 276, 415, 479
DdeI CTNAG 1 cut(s) 437
DpnI GATC 4 cut(s) 75, 81, 131, 351
DpnII GATC 4 cut(s) 73, 79, 129, 349
EaeI YGGCCR 2 cut(s) 39, 63
EagI CGGCCG 1 cut(s) 39
Eam1104I CTCTTC 4 cut(s) 23, 165, 396, 501
EarI CTCTTC 4 cut(s) 23, 165, 396, 501
Ecl136II GAGCTC 1 cut(s) 276
EclXI CGGCCG 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 278
Eco31I GGTCTC 1 cut(s) 167
Eco32I GATATC 2 cut(s) 100, 462
Eco52I CGGCCG 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 276
Eco57I CTGAAG 3 cut(s) 216, 242, 576
EcoICRI GAGCTC 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 23
EcoRV GATATC 2 cut(s) 100, 462
EcoT38I GRGCYC 1 cut(s) 278
FaeI CATG 2 cut(s) 115, 473
FaiI YATR 4 cut(s) 113, 429, 458, 471
FatI CATG 2 cut(s) 111, 469
Fnu4HI GCNGC 1 cut(s) 39
FriOI GRGCYC 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 39
GlaI GCGC 3 cut(s) 35, 37, 144
GluI GCNGC 1 cut(s) 39
GsuI CTGGAG 1 cut(s) 76
HaeIII GGCC 2 cut(s) 41, 65
HgaI GACGC 1 cut(s) 595
HhaI GCGC 3 cut(s) 36, 38, 145
Hin1I GRCGYC 1 cut(s) 606
Hin1II CATG 2 cut(s) 115, 473
Hin6I GCGC 3 cut(s) 34, 36, 143
HinP1I GCGC 3 cut(s) 34, 36, 143
HindIII AAGCTT 1 cut(s) 477
HinfI GANTC 4 cut(s) 44, 108, 156, 509
Hpy166II GTNNAC 2 cut(s) 6, 331
Hpy188I TCNGA 8 cut(s) 49, 134, 196, 440, 466, 516, 595, 611
Hpy188III TCNNGA 5 cut(s) 77, 83, 160, 256, 578
Hpy8I GTNNAC 2 cut(s) 6, 331
HpyAV CCTTC 4 cut(s) 133, 232, 400, 596
HpyCH4V TGCA 3 cut(s) 124, 345, 483
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 437
Hsp92I GRCGYC 1 cut(s) 606
Hsp92II CATG 2 cut(s) 115, 473
HspAI GCGC 3 cut(s) 34, 36, 143
Kzo9I GATC 4 cut(s) 73, 79, 129, 349
LpnPI CCDG 9 cut(s) 10, 37, 106, 187, 196, 229, 386, 515, 563
LweI GCATC 1 cut(s) 577
MalI GATC 4 cut(s) 75, 81, 131, 351
MboI GATC 4 cut(s) 73, 79, 129, 349
MboII GAAGA 9 cut(s) 40, 175, 182, 313, 410, 413, 518, 535, 611
MflI RGATCY 1 cut(s) 129
MhlI GDGCHC 1 cut(s) 278
MluCI AATT 3 cut(s) 292, 338, 492
MlyI GAGTC 3 cut(s) 53, 150, 518
MnlI CCTC 4 cut(s) 24, 80, 98, 549
MspR9I CCNGG 1 cut(s) 25
MvaI CCWGG 1 cut(s) 25
MvnI CGCG 3 cut(s) 36, 38, 257
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 4 cut(s) 73, 79, 129, 349
NlaIII CATG 2 cut(s) 115, 473
NmeAIII GCCGAG 1 cut(s) 67
NruI TCGCGA 1 cut(s) 257
PauI GCGCGC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 108
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 3 cut(s) 52, 150, 517
PpsI GAGTC 3 cut(s) 52, 150, 517
Psp124BI GAGCTC 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PsuI RGATCY 1 cut(s) 129
PteI GCGCGC 1 cut(s) 34
RruI TCGCGA 1 cut(s) 257
SacI GAGCTC 1 cut(s) 278
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 4 cut(s) 73, 79, 129, 349
SchI GAGTC 3 cut(s) 53, 150, 518
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 1 cut(s) 278
SetI ASST 7 cut(s) 54, 72, 90, 206, 278, 382, 481
SfaNI GCATC 1 cut(s) 577
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 3 cut(s) 292, 338, 492
SsiI CCGC 2 cut(s) 9, 38
SstI GAGCTC 1 cut(s) 278
StyD4I CCNGG 1 cut(s) 23
TaqI TCGA 5 cut(s) 72, 78, 84, 227, 424
TasI AATT 3 cut(s) 292, 338, 492
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 1 cut(s) 108
TscAI CASTG 2 cut(s) 100, 190
TspDTI ATGAA 4 cut(s) 231, 486, 561, 612
TspGWI ACGGA 1 cut(s) 168
TspRI CASTG 2 cut(s) 100, 190
XapI RAATTY 2 cut(s) 338, 492
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.