Prupe.4G046300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014040
Physical Location & Seq
Forward (+)
2205105 .. 2207682
2578 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G046300.1

Sequence Viewer

Length: 609 bp
ATGTCGACCGCCAAAGCGAGTAACAAGAAGCGCAGGACCGAGCCTCAGCGCGCCAAATCGGATCACCTCGATCTCGATCTCGACCTCTCCAATGATATCAAAGGAATTATGTCGGCACTGCATCAGATCCGAGAGAAAGCTCACAATGACGGGCTTAAGAAGAACGAGGAGACCATATCAAGTGTGGCTGCTGAGGTCAGGTCTGTGATTGATGATCTGAAGTCTAAAGTTGAGAAGGATAGACAAAGTTTCGCTAAATCTCTTTCGAAGAGCTCAAAAGAGTGTGAGAATTGCTTGAAGACTGAAACTGCCAAGTTCCAAGCACTCTATGAGAAGTTTTGCAAGGACCAAGCCAACCATCTACAGGCCTTGAAAGGCATCATTTCCAACTATGAAGAAGAGAAGGAAAGGCTCTGCACACGATATGAACAACTGAGAAAGAAAGAAAGGAGTCTGATATCTGAGCATGAGAAATCTTGTACTGATAAAATTGCTAAACTGGAAGAGTCATTGAAAAAGAAGAAGCAGGATGACAGAACTTTCAGCGTTCTGAGAAAGACTCTTGGCTCATTTCTGGAGAGTGACGAGGACATCCCGGCTGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

23.18

Weight (kDa)

8.46

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33793 AT2G33793 AT2G33793
fragaria_vesca FvH4_3g09320
malus_domestica MD05G1313300.v1.1
prunus_persica Prupe.4G046300_v2.0.a1
pyrus_communis pycom05g29130
rosa_chinensis RchiOBHm_Chr5g0008281
rosa_laevigata RLG00000031558
rosa_roxburghii Rroxscaffold_1G00055470 Rroxscaffold_1G00068180
rosa_rugosa Rorug04G0434700
rosa_samantha Rh5AG063400 Rh5BG059900 Rh5CG070200 Rh5DG059400
rosa_wichuraiana Rw5G005750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 51
AciI CCGC 1 cut(s) 9
AclWI GGATC 2 cut(s) 69, 121
AcuI CTGAAG 1 cut(s) 239
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 1 cut(s) 364
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 3 cut(s) 298, 373, 514
AluBI AGCT 2 cut(s) 140, 273
AluI AGCT 2 cut(s) 140, 273
Alw21I GWGCWC 1 cut(s) 275
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 2 cut(s) 69, 121
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 1 cut(s) 188
AspLEI GCGC 3 cut(s) 33, 51, 53
AspS9I GGNCC 2 cut(s) 36, 346
AsuC2I CCSGG 1 cut(s) 596
AsuHPI GGTGA 1 cut(s) 56
AsuII TTCGAA 1 cut(s) 266
AvaII GGWCC 2 cut(s) 36, 346
BanII GRGCYC 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 275
BbvCI CCTCAGC 2 cut(s) 45, 192
BbvI GCAGC 1 cut(s) 175
BccI CCATC 1 cut(s) 366
BcnI CCSGG 1 cut(s) 596
BcoDI GTCTC 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 362
BfrI CTTAAG 1 cut(s) 155
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 596
Bme18I GGWCC 2 cut(s) 36, 346
BmgT120I GGNCC 2 cut(s) 36, 346
BmrFI CCNGG 1 cut(s) 596
BmsI GCATC 2 cut(s) 130, 387
BpiI GAAGAC 1 cut(s) 305
BplI GAGNNNNNCTC 2 cut(s) 544, 576
BpmI CTGGAG 1 cut(s) 596
Bpu10I CCTNAGC 2 cut(s) 45, 192
Bpu14I TTCGAA 1 cut(s) 266
BpuMI CCSGG 1 cut(s) 596
BsaBI GATNNNNATC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 504
Bse8I GATNNNNATC 1 cut(s) 75
BseGI GGATG 2 cut(s) 535, 591
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 5 cut(s) 59, 183, 425, 453, 542
BseNI ACTGG 1 cut(s) 504
BsePI GCGCGC 1 cut(s) 49
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 175
BsgI GTGCAG 1 cut(s) 400
Bsh1236I CGCG 1 cut(s) 51
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 275
BsiSI CCGG 1 cut(s) 596
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 1 cut(s) 368
Bso31I GGTCTC 1 cut(s) 164
Bsp119I TTCGAA 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 5 cut(s) 61, 70, 76, 126, 214
BspACI CCGC 1 cut(s) 9
BspANI GGCC 1 cut(s) 368
BspCNI CTCAG 5 cut(s) 58, 184, 426, 454, 543
BspFNI CGCG 1 cut(s) 51
BspPI GGATC 2 cut(s) 69, 121
BspQI GCTCTTC 1 cut(s) 263
BspT104I TTCGAA 1 cut(s) 266
BspTI CTTAAG 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 504
BssHII GCGCGC 1 cut(s) 49
BssMI GATC 5 cut(s) 61, 70, 76, 126, 214
Bst6I CTCTTC 3 cut(s) 263, 393, 498
BstAFI CTTAAG 1 cut(s) 155
BstBI TTCGAA 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 5 cut(s) 45, 192, 434, 462, 551
BstF5I GGATG 2 cut(s) 535, 591
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 3 cut(s) 33, 51, 53
BstKTI GATC 5 cut(s) 64, 73, 79, 129, 217
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 5 cut(s) 61, 70, 76, 126, 214
BstMCI CGRYCG 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 594
BstSFI CTRYAG 1 cut(s) 362
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 305
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
BsuRI GGCC 1 cut(s) 368
BtsCI GGATG 2 cut(s) 535, 591
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 51
CfoI GCGC 3 cut(s) 33, 51, 53
Cfr13I GGNCC 2 cut(s) 36, 346
Csp6I GTAC 1 cut(s) 480
CviAII CATG 1 cut(s) 467
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 5 cut(s) 45, 192, 434, 462, 551
DpnI GATC 5 cut(s) 63, 72, 78, 128, 216
DpnII GATC 5 cut(s) 61, 70, 76, 126, 214
Eam1104I CTCTTC 3 cut(s) 263, 393, 498
EarI CTCTTC 3 cut(s) 263, 393, 498
Ecl136II GAGCTC 1 cut(s) 273
Eco147I AGGCCT 1 cut(s) 368
Eco24I GRGCYC 1 cut(s) 275
Eco31I GGTCTC 1 cut(s) 164
Eco32I GATATC 2 cut(s) 97, 459
Eco47I GGWCC 2 cut(s) 36, 346
Eco53kI GAGCTC 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 273
EcoRV GATATC 2 cut(s) 97, 459
EcoT38I GRGCYC 1 cut(s) 275
FaeI CATG 1 cut(s) 470
FaiI YATR 6 cut(s) 110, 176, 330, 393, 426, 468
FatI CATG 1 cut(s) 466
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 2 cut(s) 542, 578
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 189
GlaI GCGC 3 cut(s) 32, 50, 52
GluI GCNGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 596
HaeIII GGCC 1 cut(s) 368
HapII CCGG 1 cut(s) 596
HhaI GCGC 3 cut(s) 33, 51, 53
Hin1II CATG 1 cut(s) 470
Hin6I GCGC 3 cut(s) 31, 49, 51
HinP1I GCGC 3 cut(s) 31, 49, 51
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 451, 506, 559
HpaII CCGG 1 cut(s) 596
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 7 cut(s) 61, 126, 131, 219, 456, 463, 552
Hpy188III TCNNGA 3 cut(s) 74, 80, 575
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 2 cut(s) 229, 397
HpyCH4V TGCA 3 cut(s) 121, 342, 417
HpyF3I CTNAG 5 cut(s) 45, 192, 434, 462, 551
Hsp92II CATG 1 cut(s) 470
HspAI GCGC 3 cut(s) 31, 49, 51
Kzo9I GATC 5 cut(s) 61, 70, 76, 126, 214
LguI GCTCTTC 1 cut(s) 263
LpnPI CCDG 6 cut(s) 19, 184, 350, 485, 512, 560
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 2 cut(s) 130, 387
MaeIII GTNAC 2 cut(s) 20, 581
MalI GATC 5 cut(s) 63, 72, 78, 128, 216
MboI GATC 5 cut(s) 61, 70, 76, 126, 214
MboII GAAGA 7 cut(s) 172, 280, 310, 407, 410, 515, 532
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 3 cut(s) 105, 289, 489
MlyI GAGTC 3 cut(s) 460, 515, 553
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 6 cut(s) 54, 77, 95, 160, 187, 580
MseI TTAA 1 cut(s) 156
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 1 cut(s) 596
MspR9I CCNGG 1 cut(s) 596
MvnI CGCG 1 cut(s) 51
NciI CCSGG 1 cut(s) 596
NdeII GATC 5 cut(s) 61, 70, 76, 126, 214
NlaIII CATG 1 cut(s) 470
NmuCI GTSAC 1 cut(s) 581
NspV TTCGAA 1 cut(s) 266
PauI GCGCGC 1 cut(s) 49
PceI AGGCCT 1 cut(s) 368
PciSI GCTCTTC 1 cut(s) 263
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 3 cut(s) 459, 514, 553
PpsI GAGTC 3 cut(s) 459, 514, 553
Psp124BI GAGCTC 1 cut(s) 275
PspPI GGNCC 2 cut(s) 36, 346
PsuI RGATCY 1 cut(s) 126
PteI GCGCGC 1 cut(s) 49
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
SacI GAGCTC 1 cut(s) 275
SalI GTCGAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 263
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 5 cut(s) 61, 70, 76, 126, 214
Sau96I GGNCC 2 cut(s) 36, 346
SchI GAGTC 3 cut(s) 460, 515, 553
ScrFI CCNGG 1 cut(s) 596
SduI GDGCHC 1 cut(s) 275
SetI ASST 6 cut(s) 69, 87, 142, 198, 203, 275
SfaNI GCATC 2 cut(s) 130, 387
SfcI CTRYAG 1 cut(s) 362
SfuI TTCGAA 1 cut(s) 266
SinI GGWCC 2 cut(s) 36, 346
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 3 cut(s) 105, 289, 489
SseBI AGGCCT 1 cut(s) 368
SsiI CCGC 1 cut(s) 9
SstI GAGCTC 1 cut(s) 275
StuI AGGCCT 1 cut(s) 368
StyD4I CCNGG 1 cut(s) 594
TaqI TCGA 5 cut(s) 5, 69, 75, 81, 266
TaqII GACCGA 1 cut(s) 53
TasI AATT 3 cut(s) 105, 289, 489
TatI WGTACW 1 cut(s) 479
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 123
TseFI GTSAC 1 cut(s) 581
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 581
TspDTI ATGAA 2 cut(s) 408, 441
TspRI CASTG 1 cut(s) 123
Vha464I CTTAAG 1 cut(s) 155
VpaK11BI GGWCC 2 cut(s) 36, 346
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.