Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006673

Physical Location & Seq

Genomic Coordinates Reverse (-)

14341355 .. 14343796

Gene Structure 2442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCTTCTTCGAATAGACACTGGCCAAGCATGTTCAAGTCCAAACCTCATCCCCATCAATGGCAACATGACATCAACTCTCCTCTCTTGCCTTCTGCTTCTCACCGATCTTCTCCTTTCTCTTCAGGATGTGAAGTGGAGAGGAGTCCAGAGCCAAAACCAAGATGGAATCCAAAGCCAGAGCAGATTCGGATACTTGAAGCAATCTTTAACTCCGGGATGGTGAATCCTCCAAGAGAGGAGATCAGGAGGATTAGGGCTCAGCTTCAAGAATACGGCCAAGTCGGTGATGCTAACGTCTTCTACTGGTTCCAAAACCGTAAGTCCCGTAGTAAACACAAACTCCGCCTCCTCCACAACCACTCCAAACACTCTCTCCCTCAAACGCAACCGCAGCCGCAGCCGCAACCTTCGGCTTCCTCTTCCTCTTCCTCCTCCTCTTCCTCCTCCAAATCCACCAAACCCCGAAAAAGCAAGAACAAGAACAACACTAATCTCTCTTTGGGTGGTAGTCAAATGATGGGGATGTTTCCACCGGAACCGGCGTTTCTCTTCCCGGTCTCCACTGTCGGAGGGTTTGAAGGTATCACCGTCTCATCCCAATTAGGGTTTCTCTCCGGTGATATGATTGAGCAACAAAAACCGGCTCCAACGTGTACCGGACTCCTGCTGAGTGAGATCATGAACGGTAGTGTGAGTTATGGAACTCATCATCAACAACACTTGAGTGAGAAAGAAGTTGAAGAAATGAGGATGAAGATGTTGCAACAGCCACAGACTCAGATTTGTTACGCTACCACTAATCATCAAATAGCTTCTTACAACAACAACAACAACAACAATAACATCATGCTTCATATTCCTCCCACTACTTCTACTGCCACCACTATTACTACTTCGCATTCTCTCGCTACTGTCCCATCAACTTCGGACCAGCTTCAAGTTCAAGCGGACGCACGAATAAGAGTTTTCATCAATGAAATGGAGCTTGAAGTGAGCTCAGGACCGTTCAATGTGAGGGATGCATTTGGGGAAGAGGTTGTTCTGATTAATTCCGCGGGTCAGCCCATTGTCACCGATGAATATGGCGTCGCTCTTCACCCTCTTCAACACGGAGCCTCGTACTATCTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007163 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010075 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030010 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048608 GO:0048638 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090451 GO:0090691 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 map04550

Pfam Domains

Protein Families

Homeobox

Protein Analysis

378

Amino Acids

42.09

Weight (kDa)

8.89

Isoelectric Point (pI)

60.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	53 - 112	4.6e-12	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33880 AT2G33880
fragaria_vesca	FvH4_3g08310 FvH4_3g08310 FvH4_3g08310 FvH4_3g10130 FvH4_3g10130 FvH4_3g10130 FvH4_3g10130 FvH4_3g10130
malus_domestica	MD05G1307400.v1.1 MD10G1286500.v1.1
prunus_persica	Prupe.4G055300_v2.0.a1
pyrus_communis	pycom05g28410
rosa_chinensis	RchiOBHm_Chr5g0009691
rosa_laevigata	RLG00000031680
rosa_multiflora	Rmu_co8361113.1_g000001 Rmu_sc0019694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066520
rosa_rugosa	Rorug04G0444800 Rorug04G0444900
rosa_samantha	Rh5AG076400 Rh5BG071600 Rh5CG084200 Rh5DG072200
rosa_wichuraiana	Rw5G007040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1058
AciI	CCGC	7 cut(s)	346, 392, 398, 404, 950, 1056, 1058
AcoI	YGGCCR	2 cut(s)	23, 277
AcuI	CTGAAG	1 cut(s)	108
AcyI	GRCGYC	1 cut(s)	1089
AfaI	GTAC	2 cut(s)	658, 1124
AfiI	CCNNNNNNNGG	2 cut(s)	60, 606
AflIII	ACRYGT	1 cut(s)	653
AjuI	GAANNNNNNNTTGG	2 cut(s)	594, 626
AleI	CACNNNNGTG	1 cut(s)	726
AluBI	AGCT	5 cut(s)	265, 815, 937, 988, 999
AluI	AGCT	5 cut(s)	265, 815, 937, 988, 999
Alw21I	GWGCWC	1 cut(s)	1001
Alw26I	GTCTC	2 cut(s)	565, 598
AoxI	GGCC	2 cut(s)	23, 277
ApeKI	GCWGC	2 cut(s)	394, 400
AseI	ATTAAT	1 cut(s)	1050
AspS9I	GGNCC	2 cut(s)	931, 1004
AsuC2I	CCSGG	2 cut(s)	217, 557
AsuHPI	GGTGA	7 cut(s)	95, 235, 299, 580, 632, 1066, 1091
AsuII	TTCGAA	1 cut(s)	11
AvaII	GGWCC	2 cut(s)	931, 1004
BalI	TGGCCA	1 cut(s)	25
BanII	GRGCYC	2 cut(s)	262, 1001
BbsI	GAAGAC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	1001
BbvI	GCAGC	2 cut(s)	406, 412
BccI	CCATC	5 cut(s)	63, 159, 214, 514, 928
BceAI	ACGGC	1 cut(s)	292
BciVI	GTATCC	1 cut(s)	186
BcnI	CCSGG	2 cut(s)	217, 557
BcoDI	GTCTC	2 cut(s)	565, 598
BfaI	CTAG	1 cut(s)	1135
BfuI	GTATCC	1 cut(s)	186
BisI	GCNGC	4 cut(s)	395, 398, 401, 404
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	4 cut(s)	396, 399, 402, 405
Bme1390I	CCNGG	2 cut(s)	217, 557
Bme18I	GGWCC	2 cut(s)	931, 1004
BmgT120I	GGNCC	2 cut(s)	931, 1004
BmiI	GGNNCC	4 cut(s)	311, 540, 648, 1117
BmrFI	CCNGG	2 cut(s)	217, 557
BmsI	GCATC	2 cut(s)	280, 1012
BpiI	GAAGAC	1 cut(s)	292
Bpu10I	CCTNAGC	1 cut(s)	1000
Bpu1102I	GCTNAGC	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	745
BpuMI	CCSGG	2 cut(s)	217, 557
BsaHI	GRCGYC	1 cut(s)	1089
BsaI	GGTCTC	1 cut(s)	565
BsaJI	CCNNGG	1 cut(s)	1056
BsaWI	WCCGGW	3 cut(s)	535, 617, 659
BsaXI	ACNNNNNCTCC	8 cut(s)	327, 333, 347, 357, 360, 363, 377, 390
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 606
Bse118I	RCCGGY	2 cut(s)	541, 643
Bse1I	ACTGG	2 cut(s)	26, 311
BseDI	CCNNGG	1 cut(s)	1056
BseGI	GGATG	7 cut(s)	49, 134, 225, 531, 596, 759, 1027
BseLI	CCNNNNNNNGG	2 cut(s)	60, 606
BseMII	CTCAG	4 cut(s)	275, 662, 794, 1014
BseNI	ACTGG	2 cut(s)	26, 311
BseRI	GAGGAG	7 cut(s)	72, 157, 254, 341, 424, 427, 436
BseXI	GCAGC	2 cut(s)	406, 412
Bsh1236I	CGCG	1 cut(s)	1058
BshFI	GGCC	2 cut(s)	25, 279
BsiHKAI	GWGCWC	1 cut(s)	1001
BsiSI	CCGG	7 cut(s)	216, 536, 542, 557, 618, 644, 660
BslFI	GGGAC	2 cut(s)	310, 902
BslI	CCNNNNNNNGG	2 cut(s)	60, 606
BsmAI	GTCTC	2 cut(s)	565, 598
BsmBI	CGTCTC	1 cut(s)	598
BsmFI	GGGAC	2 cut(s)	310, 902
BsmI	GAATGC	1 cut(s)	901
BsnI	GGCC	2 cut(s)	25, 279
Bso31I	GGTCTC	1 cut(s)	565
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	262, 1001
Bsp143I	GATC	4 cut(s)	107, 243, 678, 1131
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	7 cut(s)	346, 392, 398, 404, 950, 1056, 1058
BspANI	GGCC	2 cut(s)	25, 279
BspCNI	CTCAG	4 cut(s)	274, 663, 793, 1013
BspFNI	CGCG	1 cut(s)	1058
BspHI	TCATGA	1 cut(s)	681
BspLI	GGNNCC	4 cut(s)	311, 540, 648, 1117
BspQI	GCTCTTC	1 cut(s)	1101
BspT104I	TTCGAA	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	565
BsrFI	RCCGGY	2 cut(s)	541, 643
BsrI	ACTGG	2 cut(s)	26, 311
BssAI	RCCGGY	2 cut(s)	541, 643
BssECI	CCNNGG	1 cut(s)	1056
BssMI	GATC	4 cut(s)	107, 243, 678, 1131
BssNI	GRCGYC	1 cut(s)	1089
Bst4CI	ACNGT	6 cut(s)	320, 568, 592, 689, 916, 1008
Bst6I	CTCTTC	8 cut(s)	127, 427, 433, 445, 557, 1029, 1101, 1110
BstACI	GRCGYC	1 cut(s)	1089
BstBI	TTCGAA	1 cut(s)	11
BstDEI	CTNAG	4 cut(s)	261, 671, 780, 1000
BstDSI	CCRYGG	1 cut(s)	1056
BstF5I	GGATG	7 cut(s)	49, 134, 225, 531, 596, 759, 1027
BstFNI	CGCG	1 cut(s)	1058
BstKTI	GATC	4 cut(s)	110, 246, 681, 1134
BstMAI	GTCTC	2 cut(s)	565, 598
BstMBI	GATC	4 cut(s)	107, 243, 678, 1131
BstMWI	GCNNNNNNNGC	3 cut(s)	394, 400, 403
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	2 cut(s)	215, 555
BstUI	CGCG	1 cut(s)	1058
BstV1I	GCAGC	2 cut(s)	406, 412
BstV2I	GAAGAC	1 cut(s)	292
BsuI	GTATCC	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	25, 279
BtgI	CCRYGG	1 cut(s)	1056
BtsCI	GGATG	7 cut(s)	49, 134, 225, 531, 596, 759, 1027
BtsIMutI	CAGTG	2 cut(s)	19, 564
CciI	TCATGA	1 cut(s)	681
Cfr10I	RCCGGY	2 cut(s)	541, 643
Cfr13I	GGNCC	2 cut(s)	931, 1004
Cfr42I	CCGCGG	1 cut(s)	1059
CseI	GACGC	2 cut(s)	962, 1078
Csp6I	GTAC	2 cut(s)	657, 1123
CviAII	CATG	4 cut(s)	31, 68, 682, 850
CviQI	GTAC	2 cut(s)	657, 1123
DdeI	CTNAG	4 cut(s)	261, 671, 780, 1000
DpnI	GATC	4 cut(s)	109, 245, 680, 1133
DpnII	GATC	4 cut(s)	107, 243, 678, 1131
EaeI	YGGCCR	2 cut(s)	23, 277
Eam1104I	CTCTTC	8 cut(s)	127, 427, 433, 445, 557, 1029, 1101, 1110
EarI	CTCTTC	8 cut(s)	127, 427, 433, 445, 557, 1029, 1101, 1110
EciI	GGCGGA	1 cut(s)	335
Ecl136II	GAGCTC	1 cut(s)	999
Eco24I	GRGCYC	2 cut(s)	262, 1001
Eco31I	GGTCTC	1 cut(s)	565
Eco47I	GGWCC	2 cut(s)	931, 1004
Eco53kI	GAGCTC	1 cut(s)	999
Eco57I	CTGAAG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	999
EcoT22I	ATGCAT	1 cut(s)	1027
EcoT38I	GRGCYC	2 cut(s)	262, 1001
Esp3I	CGTCTC	1 cut(s)	598
FaeI	CATG	4 cut(s)	34, 71, 685, 853
FaiI	YATR	8 cut(s)	32, 69, 626, 683, 702, 851, 858, 1086
FaqI	GGGAC	2 cut(s)	310, 902
FatI	CATG	4 cut(s)	30, 67, 681, 849
FauI	CCCGC	1 cut(s)	1051
Fnu4HI	GCNGC	4 cut(s)	395, 398, 401, 404
FokI	GGATG	7 cut(s)	36, 141, 232, 538, 583, 766, 1034
FriOI	GRGCYC	2 cut(s)	262, 1001
Fsp4HI	GCNGC	4 cut(s)	395, 398, 401, 404
FspBI	CTAG	1 cut(s)	1135
GluI	GCNGC	4 cut(s)	395, 398, 401, 404
HaeIII	GGCC	2 cut(s)	25, 279
HapII	CCGG	7 cut(s)	216, 536, 542, 557, 618, 644, 660
HgaI	GACGC	2 cut(s)	962, 1078
Hin1I	GRCGYC	1 cut(s)	1089
Hin1II	CATG	4 cut(s)	34, 71, 685, 853
HinfI	GANTC	6 cut(s)	145, 169, 187, 226, 663, 778
HpaII	CCGG	7 cut(s)	216, 536, 542, 557, 618, 644, 660
HphI	GGTGA	7 cut(s)	95, 235, 299, 580, 632, 1066, 1091
Hpy166II	GTNNAC	2 cut(s)	335, 657
Hpy188I	TCNGA	6 cut(s)	192, 572, 783, 931, 1047, 1131
Hpy188III	TCNNGA	6 cut(s)	126, 149, 247, 269, 682, 1002
Hpy8I	GTNNAC	2 cut(s)	335, 657
Hpy99I	CGWCG	1 cut(s)	1094
HpyAV	CCTTC	3 cut(s)	102, 420, 575
HpyCH4III	ACNGT	6 cut(s)	320, 568, 592, 689, 916, 1008
HpyCH4IV	ACGT	2 cut(s)	297, 653
HpyCH4V	TGCA	2 cut(s)	766, 1025
HpyF10VI	GCNNNNNNNGC	3 cut(s)	394, 400, 403
HpyF3I	CTNAG	4 cut(s)	261, 671, 780, 1000
HpySE526I	ACGT	2 cut(s)	297, 653
Hsp92I	GRCGYC	1 cut(s)	1089
Hsp92II	CATG	4 cut(s)	34, 71, 685, 853
KspI	CCGCGG	1 cut(s)	1059
Kzo9I	GATC	4 cut(s)	107, 243, 678, 1131
LguI	GCTCTTC	1 cut(s)	1101
LmnI	GCTCC	3 cut(s)	652, 985, 1115
Lsp1109I	GCAGC	2 cut(s)	406, 412
LweI	GCATC	2 cut(s)	280, 1012
MaeI	CTAG	1 cut(s)	1135
MaeII	ACGT	2 cut(s)	297, 653
MaeIII	GTNAC	2 cut(s)	788, 1072
MalI	GATC	4 cut(s)	109, 245, 680, 1133
MboI	GATC	4 cut(s)	107, 243, 678, 1131
MhlI	GDGCHC	2 cut(s)	262, 1001
MlsI	TGGCCA	1 cut(s)	25
MluCI	AATT	2 cut(s)	602, 1051
MluNI	TGGCCA	1 cut(s)	25
MlyI	GAGTC	3 cut(s)	154, 657, 772
MmeI	TCCRAC	2 cut(s)	550, 674
Mox20I	TGGCCA	1 cut(s)	25
Mph1103I	ATGCAT	1 cut(s)	1027
MscI	TGGCCA	1 cut(s)	25
MseI	TTAA	2 cut(s)	210, 1050
MslI	CAYNNNNRTG	1 cut(s)	726
Msp20I	TGGCCA	1 cut(s)	25
MspA1I	CMGCKG	1 cut(s)	1058
MspI	CCGG	7 cut(s)	216, 536, 542, 557, 618, 644, 660
MspR9I	CCNGG	2 cut(s)	217, 557
Mva1269I	GAATGC	1 cut(s)	901
MvnI	CGCG	1 cut(s)	1058
MwoI	GCNNNNNNNGC	3 cut(s)	394, 400, 403
NciI	CCSGG	2 cut(s)	217, 557
NdeII	GATC	4 cut(s)	107, 243, 678, 1131
NlaIII	CATG	4 cut(s)	34, 71, 685, 853
NlaIV	GGNNCC	4 cut(s)	311, 540, 648, 1117
NmuCI	GTSAC	1 cut(s)	1072
NsiI	ATGCAT	1 cut(s)	1027
NspI	RCATGY	1 cut(s)	34
NspV	TTCGAA	1 cut(s)	11
OliI	CACNNNNGTG	1 cut(s)	726
PagI	TCATGA	1 cut(s)	681
PciSI	GCTCTTC	1 cut(s)	1101
PctI	GAATGC	1 cut(s)	901
PfeI	GAWTC	3 cut(s)	169, 187, 226
PfoI	TCCNGGA	1 cut(s)	215
PkrI	GCNGC	4 cut(s)	396, 399, 402, 405
PleI	GAGTC	3 cut(s)	153, 657, 772
PpsI	GAGTC	3 cut(s)	153, 657, 772
PshBI	ATTAAT	1 cut(s)	1050
Psp124BI	GAGCTC	1 cut(s)	1001
PspN4I	GGNNCC	4 cut(s)	311, 540, 648, 1117
PspPI	GGNCC	2 cut(s)	931, 1004
RsaI	GTAC	2 cut(s)	658, 1124
RsaNI	GTAC	2 cut(s)	657, 1123
RseI	CAYNNNNRTG	1 cut(s)	726
SacI	GAGCTC	1 cut(s)	1001
SacII	CCGCGG	1 cut(s)	1059
SapI	GCTCTTC	1 cut(s)	1101
SaqAI	TTAA	2 cut(s)	210, 1050
SatI	GCNGC	4 cut(s)	395, 398, 401, 404
Sau3AI	GATC	4 cut(s)	107, 243, 678, 1131
Sau96I	GGNCC	2 cut(s)	931, 1004
SchI	GAGTC	3 cut(s)	154, 657, 772
ScrFI	CCNGG	2 cut(s)	217, 557
SduI	GDGCHC	2 cut(s)	262, 1001
SfaNI	GCATC	2 cut(s)	280, 1012
Sfr303I	CCGCGG	1 cut(s)	1059
SfuI	TTCGAA	1 cut(s)	11
SgrBI	CCGCGG	1 cut(s)	1059
SinI	GGWCC	2 cut(s)	931, 1004
SmiMI	CAYNNNNRTG	1 cut(s)	726
SmlI	CTYRAG	1 cut(s)	724
SmoI	CTYRAG	1 cut(s)	724
Sse9I	AATT	2 cut(s)	602, 1051
SsiI	CCGC	7 cut(s)	346, 392, 398, 404, 950, 1056, 1058
SspMI	CTAG	1 cut(s)	1135
SstI	GAGCTC	1 cut(s)	1001
StyD4I	CCNGG	2 cut(s)	215, 555
TaaI	ACNGT	6 cut(s)	320, 568, 592, 689, 916, 1008
TaiI	ACGT	2 cut(s)	300, 656
TaqI	TCGA	1 cut(s)	11
TasI	AATT	2 cut(s)	602, 1051
TauI	GCSGC	2 cut(s)	400, 406
TfiI	GAWTC	3 cut(s)	169, 187, 226
Tru1I	TTAA	2 cut(s)	210, 1050
Tru9I	TTAA	2 cut(s)	210, 1050
TscAI	CASTG	2 cut(s)	26, 571
TseFI	GTSAC	1 cut(s)	1072
TseI	GCWGC	2 cut(s)	394, 400
Tsp45I	GTSAC	1 cut(s)	1072
TspDTI	ATGAA	6 cut(s)	698, 770, 845, 961, 993, 1095
TspGWI	ACGGA	1 cut(s)	1128
TspRI	CASTG	2 cut(s)	26, 571
VpaK11BI	GGWCC	2 cut(s)	931, 1004
VspI	ATTAAT	1 cut(s)	1050
XceI	RCATGY	1 cut(s)	34
XcmI	CCANNNNNNNNNTGG	1 cut(s)	162
XspI	CTAG	1 cut(s)	1135
Zsp2I	ATGCAT	1 cut(s)	1027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.