Rmu_sc0019694.1_g000001

WUSCHEL-related homeobox

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019694.1
Physical Location & Seq
Reverse (-)
110 .. 970
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019694.1_g000001.1.cds

Sequence Viewer

Length: 861 bp
atgagtgcaatggtgtacgcagggatcgaagatcaaaggactccggagccaaagccgcggtggaaccctcggccggagcagattcgaattctggaagctattttcaactccgggatggtgaatcctccgagggacgagataaggaagatcagagctcagctccaagagtacggtcaagtcggtgacgccaatgtcttctactggttccagaacagaaaatcaaggtccaaacacaagcttcgcctgcaacacattaactcaaagcagcagcaacaatcccataaaccatcactgactgctgctccttcatcttcttcttcatcttcggaaagatcctctcccaacaaacagcagcagcagtcaaacaaggccttctctatggggttctcctcaccaccacatgttgttactactcatgatgtttccaacattaactcaccgaccgcttcggtcaatcagacatcctttttccatgctcttcccaaccctgaggtcttgcctgaatcagcctacttctttccggtgaacaacccttctaccaacgggccggtagctagtgctagttttagtactacgcaagggttttgcttttccgagctcgcgaatgtggttcatgtgaataatagtcccgatcttcatgggccttgtactagtcttttgcttagtgagattatgaacaacaacgggatggcctcaaggaagaatggtcaagatcaagagatgaagggcatcaagatggaccaactgcaacaacagctcaattacaatggcgctgtcaccacttctccaacaactactggtgccgttaacgttgctgttccatcacccatgactcacattcaaggtaatttgagaaattag

Protein Analysis

286

Amino Acids

31.56

Weight (kDa)

9.42

Isoelectric Point (pI)

71.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
AccB1I GGYRCC 1 cut(s) 800
AccII CGCG 2 cut(s) 58, 602
AccIII TCCGGA 1 cut(s) 43
AciI CCGC 3 cut(s) 56, 58, 444
AclI AACGTT 1 cut(s) 810
AclWI GGATC 2 cut(s) 32, 327
AcoI YGGCCR 1 cut(s) 71
AcsI RAATTY 1 cut(s) 87
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 4 cut(s) 17, 170, 571, 649
AfiI CCNNNNNNNGG 1 cut(s) 73
AflIII ACRYGT 1 cut(s) 400
AgsI TTSAA 2 cut(s) 106, 842
AhlI ACTAGT 1 cut(s) 650
AluBI AGCT 7 cut(s) 98, 155, 160, 238, 554, 598, 757
AluI AGCT 7 cut(s) 98, 155, 160, 238, 554, 598, 757
Alw21I GWGCWC 2 cut(s) 157, 600
AlwI GGATC 2 cut(s) 32, 327
Aor13HI TCCGGA 1 cut(s) 43
AoxI GGCC 5 cut(s) 71, 369, 545, 641, 690
ApeKI GCWGC 5 cut(s) 265, 268, 299, 352, 355
ApoI RAATTY 1 cut(s) 87
AspLEI GCGC 1 cut(s) 773
AspS9I GGNCC 4 cut(s) 225, 545, 641, 739
AsuC2I CCSGG 1 cut(s) 112
AsuHPI GGTGA 7 cut(s) 130, 194, 384, 429, 535, 769, 816
AsuII TTCGAA 1 cut(s) 85
AvaII GGWCC 2 cut(s) 225, 739
AxyI CCTNAGG 1 cut(s) 489
BanI GGYRCC 1 cut(s) 800
BanII GRGCYC 2 cut(s) 157, 600
BbsI GAAGAC 1 cut(s) 187
Bbv12I GWGCWC 2 cut(s) 157, 600
BbvI GCAGC 5 cut(s) 277, 280, 286, 364, 367
BccI CCATC 5 cut(s) 109, 295, 682, 730, 829
BceAI ACGGC 1 cut(s) 788
BcnI CCSGG 1 cut(s) 112
BcuI ACTAGT 1 cut(s) 650
BfaI CTAG 3 cut(s) 555, 561, 651
BfoI RGCGCY 1 cut(s) 774
BisI GCNGC 6 cut(s) 56, 266, 269, 300, 353, 356
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 6 cut(s) 57, 267, 270, 301, 354, 357
BmcAI AGTACT 1 cut(s) 571
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 2 cut(s) 225, 739
BmgT120I GGNCC 4 cut(s) 225, 545, 641, 739
BmiI GGNNCC 4 cut(s) 48, 65, 206, 802
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 1 cut(s) 738
BpiI GAAGAC 1 cut(s) 187
BplI GAGNNNNNCTC 2 cut(s) 144, 176
Bpu1102I GCTNAGC 1 cut(s) 156
Bpu14I TTCGAA 1 cut(s) 85
BpuEI CTTGAG 1 cut(s) 679
BpuMI CCSGG 1 cut(s) 112
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 3 cut(s) 56, 68, 128
BsaWI WCCGGW 2 cut(s) 43, 520
BsaXI ACNNNNNCTCC 4 cut(s) 286, 316, 769, 799
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse118I RCCGGY 1 cut(s) 547
Bse1I ACTGG 2 cut(s) 206, 802
Bse21I CCTNAGG 1 cut(s) 489
Bse3DI GCAATG 1 cut(s) 15
BseAI TCCGGA 1 cut(s) 43
BseDI CCNNGG 3 cut(s) 56, 68, 128
BseGI GGATG 3 cut(s) 120, 461, 693
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 170, 480
BseNI ACTGG 2 cut(s) 206, 802
BseRI GAGGAG 1 cut(s) 379
BseX3I CGGCCG 1 cut(s) 71
BseXI GCAGC 5 cut(s) 277, 280, 286, 364, 367
Bsh1236I CGCG 2 cut(s) 58, 602
Bsh1285I CGRYCG 2 cut(s) 74, 444
BshFI GGCC 5 cut(s) 73, 371, 547, 643, 692
BshNI GGYRCC 1 cut(s) 800
BsiEI CGRYCG 2 cut(s) 74, 444
BsiHKAI GWGCWC 2 cut(s) 157, 600
BsiSI CCGG 5 cut(s) 44, 74, 111, 521, 548
BslFI GGGAC 2 cut(s) 146, 612
BslI CCNNNNNNNGG 1 cut(s) 73
BsmFI GGGAC 2 cut(s) 146, 612
BsnI GGCC 5 cut(s) 73, 371, 547, 643, 692
Bsp119I TTCGAA 1 cut(s) 85
Bsp1286I GDGCHC 2 cut(s) 157, 600
Bsp13I TCCGGA 1 cut(s) 43
Bsp143I GATC 6 cut(s) 24, 31, 147, 332, 631, 712
Bsp1720I GCTNAGC 1 cut(s) 156
Bsp68I TCGCGA 1 cut(s) 602
BspACI CCGC 3 cut(s) 56, 58, 444
BspANI GGCC 5 cut(s) 73, 371, 547, 643, 692
BspCNI CTCAG 2 cut(s) 169, 481
BspEI TCCGGA 1 cut(s) 43
BspFNI CGCG 2 cut(s) 58, 602
BspHI TCATGA 1 cut(s) 415
BspLI GGNNCC 4 cut(s) 48, 65, 206, 802
BspPI GGATC 2 cut(s) 32, 327
BspQI GCTCTTC 1 cut(s) 483
BspT104I TTCGAA 1 cut(s) 85
BspT107I GGYRCC 1 cut(s) 800
BsrDI GCAATG 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 547
BsrI ACTGG 2 cut(s) 206, 802
BssAI RCCGGY 1 cut(s) 547
BssECI CCNNGG 3 cut(s) 56, 68, 128
BssMI GATC 6 cut(s) 24, 31, 147, 332, 631, 712
BssNI GRCGYC 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 483
BstACI GRCGYC 1 cut(s) 186
BstBI TTCGAA 1 cut(s) 85
BstC8I GCNNGC 2 cut(s) 245, 600
BstDEI CTNAG 3 cut(s) 156, 489, 662
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 3 cut(s) 120, 461, 693
BstFNI CGCG 2 cut(s) 58, 602
BstH2I RGCGCY 1 cut(s) 774
BstHHI GCGC 1 cut(s) 773
BstKTI GATC 6 cut(s) 27, 34, 150, 335, 634, 715
BstMBI GATC 6 cut(s) 24, 31, 147, 332, 631, 712
BstMCI CGRYCG 2 cut(s) 74, 444
BstMWI GCNNNNNNNGC 3 cut(s) 55, 244, 754
BstNSI RCATGY 1 cut(s) 404
BstSCI CCNGG 1 cut(s) 110
BstUI CGCG 2 cut(s) 58, 602
BstV1I GCAGC 5 cut(s) 277, 280, 286, 364, 367
BstV2I GAAGAC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BstZI CGGCCG 1 cut(s) 71
Bsu36I CCTNAGG 1 cut(s) 489
BsuRI GGCC 5 cut(s) 73, 371, 547, 643, 692
BtgI CCRYGG 1 cut(s) 56
BtsCI GGATG 3 cut(s) 120, 461, 693
BtsIMutI CAGTG 1 cut(s) 290
BtuMI TCGCGA 1 cut(s) 602
Cac8I GCNNGC 2 cut(s) 245, 600
CciI TCATGA 1 cut(s) 415
CfoI GCGC 1 cut(s) 773
Cfr10I RCCGGY 1 cut(s) 547
Cfr13I GGNCC 4 cut(s) 225, 545, 641, 739
Cfr42I CCGCGG 1 cut(s) 59
CseI GACGC 1 cut(s) 194
Csp6I GTAC 4 cut(s) 16, 169, 570, 648
CviAII CATG 6 cut(s) 401, 416, 473, 614, 638, 829
CviQI GTAC 4 cut(s) 16, 169, 570, 648
DdeI CTNAG 3 cut(s) 156, 489, 662
DpnI GATC 6 cut(s) 26, 33, 149, 334, 633, 714
DpnII GATC 6 cut(s) 24, 31, 147, 332, 631, 712
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 71
EagI CGGCCG 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Ecl136II GAGCTC 2 cut(s) 155, 598
EclXI CGGCCG 1 cut(s) 71
Eco147I AGGCCT 1 cut(s) 371
Eco24I GRGCYC 2 cut(s) 157, 600
Eco47I GGWCC 2 cut(s) 225, 739
Eco52I CGGCCG 1 cut(s) 71
Eco53kI GAGCTC 2 cut(s) 155, 598
Eco81I CCTNAGG 1 cut(s) 489
EcoICRI GAGCTC 2 cut(s) 155, 598
EcoRI GAATTC 1 cut(s) 87
EcoT38I GRGCYC 2 cut(s) 157, 600
FaeI CATG 6 cut(s) 404, 419, 476, 617, 641, 832
FaiI YATR 9 cut(s) 282, 380, 402, 417, 474, 615, 639, 674, 830
FaqI GGGAC 2 cut(s) 146, 612
FatI CATG 6 cut(s) 400, 415, 472, 613, 637, 828
Fnu4HI GCNGC 6 cut(s) 56, 266, 269, 300, 353, 356
FokI GGATG 3 cut(s) 127, 448, 700
FriOI GRGCYC 2 cut(s) 157, 600
Fsp4HI GCNGC 6 cut(s) 56, 266, 269, 300, 353, 356
FspBI CTAG 3 cut(s) 555, 561, 651
GlaI GCGC 1 cut(s) 772
GluI GCNGC 6 cut(s) 56, 266, 269, 300, 353, 356
HaeII RGCGCY 1 cut(s) 774
HaeIII GGCC 5 cut(s) 73, 371, 547, 643, 692
HapII CCGG 5 cut(s) 44, 74, 111, 521, 548
HgaI GACGC 1 cut(s) 194
HhaI GCGC 1 cut(s) 773
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 6 cut(s) 404, 419, 476, 617, 641, 832
Hin6I GCGC 1 cut(s) 771
HinP1I GCGC 1 cut(s) 771
HincII GTYRAC 1 cut(s) 808
HindII GTYRAC 1 cut(s) 808
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 5 cut(s) 40, 82, 121, 503, 832
HpaI GTTAAC 1 cut(s) 808
HpaII CCGG 5 cut(s) 44, 74, 111, 521, 548
HphI GGTGA 7 cut(s) 130, 194, 384, 429, 535, 769, 816
Hpy166II GTNNAC 3 cut(s) 16, 526, 808
Hpy188I TCNGA 5 cut(s) 129, 152, 328, 459, 595
Hpy188III TCNNGA 9 cut(s) 44, 92, 208, 416, 601, 629, 710, 716, 733
Hpy8I GTNNAC 3 cut(s) 16, 526, 808
HpyAV CCTTC 4 cut(s) 315, 382, 543, 718
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 810
HpyCH4V TGCA 3 cut(s) 8, 247, 748
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 244, 754
HpyF3I CTNAG 3 cut(s) 156, 489, 662
HpySE526I ACGT 1 cut(s) 810
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 6 cut(s) 404, 419, 476, 617, 641, 832
HspAI GCGC 1 cut(s) 771
Kpn2I TCCGGA 1 cut(s) 43
KspAI GTTAAC 1 cut(s) 808
KspI CCGCGG 1 cut(s) 59
Kzo9I GATC 6 cut(s) 24, 31, 147, 332, 631, 712
LguI GCTCTTC 1 cut(s) 483
LmnI GCTCC 4 cut(s) 46, 76, 165, 307
Lsp1109I GCAGC 5 cut(s) 277, 280, 286, 364, 367
LweI GCATC 1 cut(s) 738
MaeI CTAG 3 cut(s) 555, 561, 651
MaeII ACGT 1 cut(s) 810
MaeIII GTNAC 3 cut(s) 182, 406, 775
MalI GATC 6 cut(s) 26, 33, 149, 334, 633, 714
MboI GATC 6 cut(s) 24, 31, 147, 332, 631, 712
MflI RGATCY 1 cut(s) 332
MhlI GDGCHC 2 cut(s) 157, 600
MluCI AATT 4 cut(s) 87, 760, 847, 856
MlyI GAGTC 2 cut(s) 34, 826
MmeI TCCRAC 2 cut(s) 450, 812
MnlI CCTC 7 cut(s) 78, 123, 135, 346, 400, 484, 703
MroI TCCGGA 1 cut(s) 43
MseI TTAA 3 cut(s) 255, 432, 807
MslI CAYNNNNRTG 1 cut(s) 734
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 5 cut(s) 44, 74, 111, 521, 548
MspR9I CCNGG 1 cut(s) 112
MvnI CGCG 2 cut(s) 58, 602
MwoI GCNNNNNNNGC 3 cut(s) 55, 244, 754
NciI CCSGG 1 cut(s) 112
NdeII GATC 6 cut(s) 24, 31, 147, 332, 631, 712
NlaIII CATG 6 cut(s) 404, 419, 476, 617, 641, 832
NlaIV GGNNCC 4 cut(s) 48, 65, 206, 802
NmeAIII GCCGAG 1 cut(s) 49
NmuCI GTSAC 2 cut(s) 182, 775
NruI TCGCGA 1 cut(s) 602
NspI RCATGY 1 cut(s) 404
NspV TTCGAA 1 cut(s) 85
PagI TCATGA 1 cut(s) 415
PceI AGGCCT 1 cut(s) 371
PciI ACATGT 1 cut(s) 400
PciSI GCTCTTC 1 cut(s) 483
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PfeI GAWTC 3 cut(s) 82, 121, 503
PfoI TCCNGGA 1 cut(s) 110
PkrI GCNGC 6 cut(s) 57, 267, 270, 301, 354, 357
PleI GAGTC 2 cut(s) 34, 826
PpsI GAGTC 2 cut(s) 34, 826
PscI ACATGT 1 cut(s) 400
Psp124BI GAGCTC 2 cut(s) 157, 600
Psp1406I AACGTT 1 cut(s) 810
PspN4I GGNNCC 4 cut(s) 48, 65, 206, 802
PspPI GGNCC 4 cut(s) 225, 545, 641, 739
PsuI RGATCY 1 cut(s) 332
RruI TCGCGA 1 cut(s) 602
RsaI GTAC 4 cut(s) 17, 170, 571, 649
RsaNI GTAC 4 cut(s) 16, 169, 570, 648
RseI CAYNNNNRTG 1 cut(s) 734
SacI GAGCTC 2 cut(s) 157, 600
SacII CCGCGG 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 483
SaqAI TTAA 3 cut(s) 255, 432, 807
SatI GCNGC 6 cut(s) 56, 266, 269, 300, 353, 356
Sau3AI GATC 6 cut(s) 24, 31, 147, 332, 631, 712
Sau96I GGNCC 4 cut(s) 225, 545, 641, 739
ScaI AGTACT 1 cut(s) 571
SchI GAGTC 2 cut(s) 34, 826
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 2 cut(s) 157, 600
SfaNI GCATC 1 cut(s) 738
Sfr303I CCGCGG 1 cut(s) 59
SfuI TTCGAA 1 cut(s) 85
SgrBI CCGCGG 1 cut(s) 59
SinI GGWCC 2 cut(s) 225, 739
SmiMI CAYNNNNRTG 1 cut(s) 734
SmlI CTYRAG 1 cut(s) 694
SmoI CTYRAG 1 cut(s) 694
SpeI ACTAGT 1 cut(s) 650
Sse9I AATT 4 cut(s) 87, 760, 847, 856
SseBI AGGCCT 1 cut(s) 371
SsiI CCGC 3 cut(s) 56, 58, 444
SspMI CTAG 3 cut(s) 555, 561, 651
SstI GAGCTC 2 cut(s) 157, 600
StuI AGGCCT 1 cut(s) 371
StyD4I CCNGG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 173
TaiI ACGT 1 cut(s) 813
TaqI TCGA 2 cut(s) 27, 85
TaqII GACCGA 1 cut(s) 439
TasI AATT 4 cut(s) 87, 760, 847, 856
TatI WGTACW 2 cut(s) 569, 647
TauI GCSGC 1 cut(s) 58
TfiI GAWTC 3 cut(s) 82, 121, 503
Tru1I TTAA 3 cut(s) 255, 432, 807
Tru9I TTAA 3 cut(s) 255, 432, 807
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 2 cut(s) 182, 775
TseI GCWGC 5 cut(s) 265, 268, 299, 352, 355
Tsp45I GTSAC 2 cut(s) 182, 775
TspDTI ATGAA 6 cut(s) 297, 309, 602, 626, 689, 737
TspRI CASTG 1 cut(s) 297
VpaK11BI GGWCC 2 cut(s) 225, 739
XapI RAATTY 1 cut(s) 87
XceI RCATGY 1 cut(s) 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 57
XspI CTAG 3 cut(s) 555, 561, 651
ZrmI AGTACT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.