Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8361113.1

Orthogroup ID

OG0006673

Physical Location & Seq

Genomic Coordinates Reverse (-)

273 .. 628

Gene Structure 356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8361113.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atggacgtgtgcatgggtgttggtgaagctggtgctgcaataatgggagcgggaggtgcggcgaaatccatggtgttcataaacgacgtcgcattcgaggtggctgcgggacccttcaacgtgcgtgaggctttcggagacgacgccgtcctcattcactcttctggtcaccctgttctcaccaatgagtggggagttacccttcactctcttcaccacggcgcattttattacctcgtgcgcatcttcatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007163 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010075 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030010 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048608 GO:0048638 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090451 GO:0090691 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 map04550

Pfam Domains

Protein Families

Homeobox

Protein Analysis

84

Amino Acids

8.84

Weight (kDa)

5.25

Isoelectric Point (pI)

15.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33880 AT2G33880
fragaria_vesca	FvH4_3g08310 FvH4_3g08310 FvH4_3g08310 FvH4_3g10130 FvH4_3g10130 FvH4_3g10130 FvH4_3g10130 FvH4_3g10130
malus_domestica	MD05G1307400.v1.1 MD10G1286500.v1.1
prunus_persica	Prupe.4G055300_v2.0.a1
pyrus_communis	pycom05g28410
rosa_chinensis	RchiOBHm_Chr5g0009691
rosa_laevigata	RLG00000031680
rosa_multiflora	Rmu_co8361113.1_g000001 Rmu_sc0019694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066520
rosa_rugosa	Rorug04G0444800 Rorug04G0444900
rosa_samantha	Rh5AG076400 Rh5BG071600 Rh5CG084200 Rh5DG072200
rosa_wichuraiana	Rw5G007040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AatII	GACGTC	1 cut(s)	90
Acc16I	TGCGCA	1 cut(s)	242
AccB7I	CCANNNNNTGG	1 cut(s)	189
AccBSI	CCGCTC	1 cut(s)	50
AciI	CCGC	3 cut(s)	50, 59, 107
AcyI	GRCGYC	2 cut(s)	87, 144
AfiI	CCNNNNNNNGG	1 cut(s)	189
AflIII	ACRYGT	1 cut(s)	6
AgsI	TTSAA	1 cut(s)	118
AjiI	CACGTC	1 cut(s)	7
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	132
ApeKI	GCWGC	2 cut(s)	35, 104
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AspLEI	GCGC	2 cut(s)	224, 243
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	4 cut(s)	35, 161, 172, 206
AvaII	GGWCC	1 cut(s)	110
BauI	CACGAG	1 cut(s)	236
BbvI	GCAGC	2 cut(s)	22, 91
BceAI	ACGGC	2 cut(s)	131, 235
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BcoDI	GTCTC	1 cut(s)	132
BisI	GCNGC	3 cut(s)	36, 60, 105
BlsI	GCNGC	3 cut(s)	37, 61, 106
Bme18I	GGWCC	1 cut(s)	110
BmgBI	CACGTC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	2 cut(s)	111, 112
BsaHI	GRCGYC	2 cut(s)	87, 144
BsaJI	CCNNGG	2 cut(s)	69, 217
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	69, 217
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseXI	GCAGC	2 cut(s)	22, 91
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	132
BsmBI	CGTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	92
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	3 cut(s)	50, 59, 107
BspLI	GGNNCC	2 cut(s)	111, 112
BsrBI	CCGCTC	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	69, 217
BssNI	GRCGYC	2 cut(s)	87, 144
BssSI	CACGAG	1 cut(s)	236
BssT1I	CCWWGG	1 cut(s)	69
Bst2BI	CACGAG	1 cut(s)	236
Bst6I	CTCTTC	2 cut(s)	166, 216
BstACI	GRCGYC	2 cut(s)	87, 144
BstDSI	CCRYGG	2 cut(s)	69, 217
BstEII	GGTNACC	1 cut(s)	167
BstHHI	GCGC	2 cut(s)	224, 243
BstMAI	GTCTC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 56
BstPI	GGTNACC	1 cut(s)	167
BstV1I	GCAGC	2 cut(s)	22, 91
BtgI	CCRYGG	2 cut(s)	69, 217
BtrI	CACGTC	1 cut(s)	7
CfoI	GCGC	2 cut(s)	224, 243
Cfr13I	GGNCC	1 cut(s)	110
CseI	GACGC	1 cut(s)	152
CviAII	CATG	2 cut(s)	13, 70
CviJI	RGCY	3 cut(s)	29, 104, 131
CviKI_1	RGCY	3 cut(s)	29, 104, 131
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
Eam1104I	CTCTTC	2 cut(s)	166, 216
EarI	CTCTTC	2 cut(s)	166, 216
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	110
Eco91I	GGTNACC	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	110
EcoO65I	GGTNACC	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	2 cut(s)	16, 73
FaiI	YATR	3 cut(s)	14, 71, 80
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	2 cut(s)	12, 69
FauI	CCCGC	2 cut(s)	43, 100
Fnu4HI	GCNGC	3 cut(s)	36, 60, 105
Fsp4HI	GCNGC	3 cut(s)	36, 60, 105
FspAI	RTGCGCAY	1 cut(s)	242
FspI	TGCGCA	1 cut(s)	242
GlaI	GCGC	2 cut(s)	223, 242
GluI	GCNGC	3 cut(s)	36, 60, 105
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	2 cut(s)	224, 243
Hin1I	GRCGYC	2 cut(s)	87, 144
Hin1II	CATG	2 cut(s)	16, 73
Hin6I	GCGC	2 cut(s)	222, 241
HinP1I	GCGC	2 cut(s)	222, 241
HphI	GGTGA	4 cut(s)	35, 161, 172, 206
Hpy188I	TCNGA	1 cut(s)	137
Hpy99I	CGWCG	3 cut(s)	89, 92, 146
HpyAV	CCTTC	2 cut(s)	124, 212
HpyCH4IV	ACGT	3 cut(s)	6, 87, 120
HpyCH4V	TGCA	2 cut(s)	12, 38
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 56
HpySE526I	ACGT	3 cut(s)	6, 87, 120
Hsp92I	GRCGYC	2 cut(s)	87, 144
Hsp92II	CATG	2 cut(s)	16, 73
HspAI	GCGC	2 cut(s)	222, 241
KflI	GGGWCCC	1 cut(s)	110
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	3 cut(s)	15, 150, 186
Lsp1109I	GCAGC	2 cut(s)	22, 91
MaeII	ACGT	3 cut(s)	6, 87, 120
MaeIII	GTNAC	2 cut(s)	167, 196
MbiI	CCGCTC	1 cut(s)	50
MboII	GAAGA	3 cut(s)	153, 203, 238
MnlI	CCTC	5 cut(s)	47, 91, 121, 161, 245
MseI	TTAA	1 cut(s)	253
Mva1269I	GAATGC	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	35, 56
NcoI	CCATGG	1 cut(s)	69
NlaIII	CATG	2 cut(s)	16, 73
NlaIV	GGNNCC	2 cut(s)	111, 112
NmuCI	GTSAC	1 cut(s)	167
NsbI	TGCGCA	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	92
PflFI	GACNNNGTC	1 cut(s)	146
PflMI	CCANNNNNTGG	1 cut(s)	189
PkrI	GCNGC	3 cut(s)	37, 61, 106
PpuMI	RGGWCCY	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	110
PspEI	GGTNACC	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	111, 112
PspPI	GGNCC	1 cut(s)	110
PspPPI	RGGWCCY	1 cut(s)	110
PsyI	GACNNNGTC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	253
SatI	GCNGC	3 cut(s)	36, 60, 105
Sau96I	GGNCC	1 cut(s)	110
SetI	ASST	7 cut(s)	9, 31, 58, 90, 102, 123, 237
SinI	GGWCC	1 cut(s)	110
SsiI	CCGC	3 cut(s)	50, 59, 107
StyI	CCWWGG	1 cut(s)	69
TaiI	ACGT	3 cut(s)	9, 90, 123
TaqI	TCGA	1 cut(s)	96
TauI	GCSGC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	253
Tru9I	TTAA	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	2 cut(s)	35, 104
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	2 cut(s)	67, 238
Tth111I	GACNNNGTC	1 cut(s)	146
Van91I	CCANNNNNTGG	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	110
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.