Prupe.4G055300_v2.0.a1

WUSCHEL-related homeobox

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
2655776 .. 2659034
3259 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G055300.1

Sequence Viewer

Length: 1251 bp
ATGGCTTCATCAAACAGACACTGGCCTAGCATGTTCAAGTCCAAGCCTGCAAACTGCAGCACCCACCACCAATGGCAGCATGACATCAACCCTTCTCTCGTTTCAAATGGATGTCACCGACCATCTTACTCCTCAGTCGCTGGGTGTGAAGAAAGAAGTCCGGAGCCAAAGCCTAGATGGAACCCAAAACCAGAGCAAATTCGCATCCTCGAAGCCATCTTCAACTCTGGGATGGTGAACCCTCCGAGGGATGAGATTAGGAAGATCAGGGCTCAGCTGCAAGAGTATGGCCAAGTTGGGGACGCCAACGTTTTCTACTGGTTCCAGAACAGGAAATCAAGAAGCAAGCACAAGCTTCGCCACCTCCACAACTCATCCAAACAACAAACCCATCACCACACCCACCTTCCTCTCACCACACCCGTCTCCACAAGCACTCTCAACATCATCAATGCTGCTGCCCCTTCTTCCTCCTCATCCTCCTCTGAAAAATCATCTCCCAAATCAGCACCAAACAACAAGGCCTTCTCCATGGGGTTCTCCTCCAACGTTGCTGCTCATGACGTTTCAATTAACTCTCCAACTGCTTCTGTGAACCAGCAGAGCAGCTTCTTTCAGCCTCATCATCAGCATCACAGCGAGCTCCTGCCCGAACCCTTCTTTTTTCCGATGCATCCGAATCCGAATTGCAATTTCACGCAAGGGTTTTGCTTCTCTGAGCTGTCTAATGTGGTTGATGTTCCCAACCATGGAACTCATGAGCAAACTAATACCAACACTGGGCCTTGCACAAGCCTGTTGCTGAGTGAGATCATGAGCCATGGGGCAGCAATGTCAAGGAAAGAATACCATCAAGAAGATGAGATGAAGGACATGAACATGAAGAACATAGACCCACACCACCTCAATTACAGTCTCAATGTCACCACCACATCTCCAACAAGCCATACTAATATGGTTGCTTCTCACACCAATGGCCCCACTACTAGTGTTGCTGTTCCATCCCCCATGATTCACAACATTCAAGGTGGTGTTGGGGAAGCGGGTGCAATGGACGCGGGAGGTGCGGAGAAATCAACGGTGTTCATAAACGACGTCGCATTCGAGGTGGGTGCGGGTCCCTTCAACGTGCGTGAGGCTTTCGGGGATGACGCCGTCCTCATTCACTCCTCTGGTCACCCCGTTCTCACCAATGAGTGGGGTCTCACCCTCCACTCTCTCCACCACGGCGCTTTCTATTACCTCATTTAG

Protein Analysis

417

Amino Acids

45.89

Weight (kDa)

6.79

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1098
AccB7I CCANNNNNTGG 1 cut(s) 1197
AccII CGCG 1 cut(s) 1058
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 4 cut(s) 1043, 1058, 1067, 1115
AclI AACGTT 2 cut(s) 309, 549
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 1 cut(s) 198
AcyI GRCGYC 3 cut(s) 303, 1095, 1152
AfiI CCNNNNNNNGG 5 cut(s) 247, 298, 749, 780, 1197
AgsI TTSAA 6 cut(s) 37, 105, 223, 570, 1025, 1126
AhlI ACTAGT 1 cut(s) 986
AluBI AGCT 5 cut(s) 277, 355, 609, 643, 721
AluI AGCT 5 cut(s) 277, 355, 609, 643, 721
Alw21I GWGCWC 1 cut(s) 645
Alw26I GTCTC 3 cut(s) 430, 920, 1208
AlwNI CAGNNNCTG 2 cut(s) 21, 140
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 5 cut(s) 23, 289, 522, 782, 976
ApeKI GCWGC 8 cut(s) 57, 76, 277, 455, 458, 554, 606, 827
ApoI RAATTY 1 cut(s) 198
ArsI GACNNNNNNTTYG 2 cut(s) 1085, 1117
AspLEI GCGC 1 cut(s) 1232
AspS9I GGNCC 3 cut(s) 782, 977, 1118
AsuHPI GGTGA 8 cut(s) 107, 247, 386, 406, 916, 1169, 1180, 1198
AvaII GGWCC 1 cut(s) 1118
BalI TGGCCA 1 cut(s) 291
BanII GRGCYC 2 cut(s) 274, 645
Bbv12I GWGCWC 1 cut(s) 645
BbvI GCAGC 8 cut(s) 69, 88, 264, 442, 445, 541, 618, 839
BccI CCATC 7 cut(s) 130, 171, 224, 226, 399, 858, 1009
BceAI ACGGC 2 cut(s) 1139, 1243
BcgI CGANNNNNNTGC 4 cut(s) 338, 372, 1094, 1128
BcoDI GTCTC 3 cut(s) 430, 920, 1208
BcuI ACTAGT 1 cut(s) 986
BfaI CTAG 3 cut(s) 27, 174, 987
BfmI CTRYAG 1 cut(s) 55
BfoI RGCGCY 1 cut(s) 1233
BisI GCNGC 8 cut(s) 58, 77, 278, 456, 459, 555, 607, 828
BlpI GCTNAGC 1 cut(s) 273
BlsI GCNGC 8 cut(s) 59, 78, 279, 457, 460, 556, 608, 829
Bme18I GGWCC 1 cut(s) 1118
BmgT120I GGNCC 3 cut(s) 782, 977, 1118
BmiI GGNNCC 6 cut(s) 165, 182, 323, 979, 1119, 1120
BmrI ACTGGG 1 cut(s) 789
BmsI GCATC 4 cut(s) 213, 640, 660, 682
BmuI ACTGGG 1 cut(s) 789
Bpu1102I GCTNAGC 1 cut(s) 273
BsaHI GRCGYC 3 cut(s) 303, 1095, 1152
BsaI GGTCTC 1 cut(s) 1208
BsaJI CCNNGG 5 cut(s) 245, 531, 748, 820, 1225
BsaWI WCCGGW 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 919, 949
Bsc4I CCNNNNNNNGG 5 cut(s) 247, 298, 749, 780, 1197
Bse1I ACTGG 3 cut(s) 26, 323, 784
Bse3DI GCAATG 2 cut(s) 837, 1056
BseAI TCCGGA 1 cut(s) 160
BseDI CCNNGG 5 cut(s) 245, 531, 748, 820, 1225
BseGI GGATG 9 cut(s) 116, 204, 237, 256, 374, 476, 673, 1001, 1153
BseLI CCNNNNNNNGG 5 cut(s) 247, 298, 749, 780, 1197
BseMI GCAATG 2 cut(s) 837, 1056
BseMII CTCAG 4 cut(s) 147, 287, 708, 794
BseNI ACTGG 3 cut(s) 26, 323, 784
BseRI GAGGAG 5 cut(s) 121, 463, 472, 532, 1159
BseXI GCAGC 8 cut(s) 69, 88, 264, 442, 445, 541, 618, 839
BseYI CCCAGC 1 cut(s) 140
Bsh1236I CGCG 1 cut(s) 1058
BshFI GGCC 5 cut(s) 25, 291, 524, 784, 978
BsiHKAI GWGCWC 1 cut(s) 645
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 2 cut(s) 314, 1104
BslI CCNNNNNNNGG 5 cut(s) 247, 298, 749, 780, 1197
BsmAI GTCTC 3 cut(s) 430, 920, 1208
BsmBI CGTCTC 1 cut(s) 430
BsmFI GGGAC 2 cut(s) 314, 1104
BsmI GAATGC 1 cut(s) 1100
BsnI GGCC 5 cut(s) 25, 291, 524, 784, 978
Bso31I GGTCTC 1 cut(s) 1208
Bsp1286I GDGCHC 2 cut(s) 274, 645
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 2 cut(s) 264, 810
Bsp1720I GCTNAGC 1 cut(s) 273
Bsp19I CCATGG 3 cut(s) 531, 748, 820
BspACI CCGC 4 cut(s) 1043, 1058, 1067, 1115
BspANI GGCC 5 cut(s) 25, 291, 524, 784, 978
BspCNI CTCAG 4 cut(s) 146, 286, 709, 795
BspEI TCCGGA 1 cut(s) 160
BspFNI CGCG 1 cut(s) 1058
BspHI TCATGA 3 cut(s) 559, 757, 813
BspLI GGNNCC 6 cut(s) 165, 182, 323, 979, 1119, 1120
BspMAI CTGCAG 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 1208
BsrDI GCAATG 2 cut(s) 837, 1056
BsrI ACTGG 3 cut(s) 26, 323, 784
BssECI CCNNGG 5 cut(s) 245, 531, 748, 820, 1225
BssMI GATC 2 cut(s) 264, 810
BssNI GRCGYC 3 cut(s) 303, 1095, 1152
BssT1I CCWWGG 3 cut(s) 531, 748, 820
Bst4CI ACNGT 2 cut(s) 914, 1081
BstACI GRCGYC 3 cut(s) 303, 1095, 1152
BstC8I GCNNGC 3 cut(s) 48, 347, 641
BstDEI CTNAG 4 cut(s) 133, 273, 717, 803
BstDSI CCRYGG 4 cut(s) 531, 748, 820, 1225
BstEII GGTNACC 1 cut(s) 1175
BstF5I GGATG 9 cut(s) 116, 204, 237, 256, 374, 476, 673, 1001, 1153
BstFNI CGCG 1 cut(s) 1058
BstH2I RGCGCY 1 cut(s) 1233
BstHHI GCGC 1 cut(s) 1232
BstKTI GATC 2 cut(s) 267, 813
BstMAI GTCTC 3 cut(s) 430, 920, 1208
BstMBI GATC 2 cut(s) 264, 810
BstMWI GCNNNNNNNGC 2 cut(s) 1055, 1064
BstNSI RCATGY 1 cut(s) 34
BstPI GGTNACC 1 cut(s) 1175
BstSFI CTRYAG 1 cut(s) 55
BstUI CGCG 1 cut(s) 1058
BstV1I GCAGC 8 cut(s) 69, 88, 264, 442, 445, 541, 618, 839
BsuRI GGCC 5 cut(s) 25, 291, 524, 784, 978
BtgI CCRYGG 4 cut(s) 531, 748, 820, 1225
BtsCI GGATG 9 cut(s) 116, 204, 237, 256, 374, 476, 673, 1001, 1153
BtsIMutI CAGTG 2 cut(s) 19, 777
Cac8I GCNNGC 3 cut(s) 48, 347, 641
CaiI CAGNNNCTG 2 cut(s) 21, 140
CciI TCATGA 3 cut(s) 559, 757, 813
CfoI GCGC 1 cut(s) 1232
Cfr13I GGNCC 3 cut(s) 782, 977, 1118
CseI GACGC 3 cut(s) 311, 1064, 1160
DdeI CTNAG 4 cut(s) 133, 273, 717, 803
DpnI GATC 2 cut(s) 266, 812
DpnII GATC 2 cut(s) 264, 810
EaeI YGGCCR 1 cut(s) 289
Ecl136II GAGCTC 1 cut(s) 643
Eco130I CCWWGG 3 cut(s) 531, 748, 820
Eco147I AGGCCT 1 cut(s) 524
Eco24I GRGCYC 2 cut(s) 274, 645
Eco31I GGTCTC 1 cut(s) 1208
Eco47I GGWCC 1 cut(s) 1118
Eco53kI GAGCTC 1 cut(s) 643
Eco91I GGTNACC 1 cut(s) 1175
EcoICRI GAGCTC 1 cut(s) 643
EcoO109I RGGNCCY 1 cut(s) 1118
EcoO65I GGTNACC 1 cut(s) 1175
EcoT14I CCWWGG 3 cut(s) 531, 748, 820
EcoT22I ATGCAT 1 cut(s) 675
EcoT38I GRGCYC 2 cut(s) 274, 645
ErhI CCWWGG 3 cut(s) 531, 748, 820
Esp3I CGTCTC 1 cut(s) 430
FaqI GGGAC 2 cut(s) 314, 1104
FauI CCCGC 3 cut(s) 1036, 1051, 1108
Fnu4HI GCNGC 8 cut(s) 58, 77, 278, 456, 459, 555, 607, 828
FokI GGATG 9 cut(s) 123, 191, 244, 263, 361, 463, 660, 988, 1160
FriOI GRGCYC 2 cut(s) 274, 645
Fsp4HI GCNGC 8 cut(s) 58, 77, 278, 456, 459, 555, 607, 828
FspBI CTAG 3 cut(s) 27, 174, 987
GlaI GCGC 1 cut(s) 1231
GluI GCNGC 8 cut(s) 58, 77, 278, 456, 459, 555, 607, 828
GsaI CCCAGC 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 1233
HaeIII GGCC 5 cut(s) 25, 291, 524, 784, 978
HapII CCGG 1 cut(s) 161
HgaI GACGC 3 cut(s) 311, 1064, 1160
HhaI GCGC 1 cut(s) 1232
Hin1I GRCGYC 3 cut(s) 303, 1095, 1152
Hin6I GCGC 1 cut(s) 1230
HinP1I GCGC 1 cut(s) 1230
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 2 cut(s) 679, 1012
HpaII CCGG 1 cut(s) 161
HphI GGTGA 8 cut(s) 107, 247, 386, 406, 916, 1169, 1180, 1198
Hpy166II GTNNAC 2 cut(s) 238, 595
Hpy188I TCNGA 6 cut(s) 246, 487, 669, 678, 684, 718
Hpy188III TCNNGA 7 cut(s) 161, 325, 339, 560, 758, 814, 854
Hpy8I GTNNAC 2 cut(s) 238, 595
Hpy99I CGWCG 2 cut(s) 1097, 1100
HpyAV CCTTC 7 cut(s) 102, 416, 474, 535, 667, 862, 1132
HpyCH4III ACNGT 2 cut(s) 914, 1081
HpyCH4IV ACGT 5 cut(s) 309, 549, 564, 1095, 1128
HpyCH4V TGCA 7 cut(s) 50, 57, 280, 673, 690, 789, 1049
HpyF10VI GCNNNNNNNGC 2 cut(s) 1055, 1064
HpyF3I CTNAG 4 cut(s) 133, 273, 717, 803
HpySE526I ACGT 5 cut(s) 309, 549, 564, 1095, 1128
Hsp92I GRCGYC 3 cut(s) 303, 1095, 1152
HspAI GCGC 1 cut(s) 1230
KflI GGGWCCC 1 cut(s) 1118
Kpn2I TCCGGA 1 cut(s) 160
Kzo9I GATC 2 cut(s) 264, 810
LmnI GCTCC 2 cut(s) 163, 648
Lsp1109I GCAGC 8 cut(s) 69, 88, 264, 442, 445, 541, 618, 839
LweI GCATC 4 cut(s) 213, 640, 660, 682
MaeI CTAG 3 cut(s) 27, 174, 987
MaeII ACGT 5 cut(s) 309, 549, 564, 1095, 1128
MaeIII GTNAC 3 cut(s) 113, 922, 1175
MalI GATC 2 cut(s) 266, 812
MboI GATC 2 cut(s) 264, 810
MboII GAAGA 6 cut(s) 161, 211, 274, 459, 869, 895
MhlI GDGCHC 2 cut(s) 274, 645
MlsI TGGCCA 1 cut(s) 291
MluCI AATT 5 cut(s) 198, 570, 685, 691, 907
MluNI TGGCCA 1 cut(s) 291
MmeI TCCRAC 3 cut(s) 570, 605, 962
Mox20I TGGCCA 1 cut(s) 291
Mph1103I ATGCAT 1 cut(s) 675
MroI TCCGGA 1 cut(s) 160
MscI TGGCCA 1 cut(s) 291
MseI TTAA 1 cut(s) 573
MslI CAYNNNNRTG 2 cut(s) 878, 972
Msp20I TGGCCA 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 277
MspI CCGG 1 cut(s) 161
Mva1269I GAATGC 1 cut(s) 1100
MvnI CGCG 1 cut(s) 1058
MwoI GCNNNNNNNGC 2 cut(s) 1055, 1064
NcoI CCATGG 3 cut(s) 531, 748, 820
NdeII GATC 2 cut(s) 264, 810
NlaIV GGNNCC 6 cut(s) 165, 182, 323, 979, 1119, 1120
NmuCI GTSAC 3 cut(s) 113, 922, 1175
NsiI ATGCAT 1 cut(s) 675
NspI RCATGY 1 cut(s) 34
PagI TCATGA 3 cut(s) 559, 757, 813
PceI AGGCCT 1 cut(s) 524
PcsI WCGNNNNNNNCGW 1 cut(s) 1101
PctI GAATGC 1 cut(s) 1100
PfeI GAWTC 2 cut(s) 679, 1012
PflFI GACNNNGTC 1 cut(s) 1154
PflMI CCANNNNNTGG 1 cut(s) 1197
PkrI GCNGC 8 cut(s) 59, 78, 279, 457, 460, 556, 608, 829
PpuMI RGGWCCY 1 cut(s) 1118
Psp124BI GAGCTC 1 cut(s) 645
Psp1406I AACGTT 2 cut(s) 309, 549
Psp5II RGGWCCY 1 cut(s) 1118
PspEI GGTNACC 1 cut(s) 1175
PspFI CCCAGC 1 cut(s) 140
PspN4I GGNNCC 6 cut(s) 165, 182, 323, 979, 1119, 1120
PspPI GGNCC 3 cut(s) 782, 977, 1118
PspPPI RGGWCCY 1 cut(s) 1118
PstI CTGCAG 1 cut(s) 59
PstNI CAGNNNCTG 2 cut(s) 21, 140
PsyI GACNNNGTC 1 cut(s) 1154
PvuII CAGCTG 1 cut(s) 277
RseI CAYNNNNRTG 2 cut(s) 878, 972
SacI GAGCTC 1 cut(s) 645
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 8 cut(s) 58, 77, 278, 456, 459, 555, 607, 828
Sau3AI GATC 2 cut(s) 264, 810
Sau96I GGNCC 3 cut(s) 782, 977, 1118
SduI GDGCHC 2 cut(s) 274, 645
SfaNI GCATC 4 cut(s) 213, 640, 660, 682
SfcI CTRYAG 1 cut(s) 55
SinI GGWCC 1 cut(s) 1118
SmiMI CAYNNNNRTG 2 cut(s) 878, 972
SpeI ACTAGT 1 cut(s) 986
Sse9I AATT 5 cut(s) 198, 570, 685, 691, 907
SseBI AGGCCT 1 cut(s) 524
SsiI CCGC 4 cut(s) 1043, 1058, 1067, 1115
SspMI CTAG 3 cut(s) 27, 174, 987
SstI GAGCTC 1 cut(s) 645
StuI AGGCCT 1 cut(s) 524
StyI CCWWGG 3 cut(s) 531, 748, 820
TaaI ACNGT 2 cut(s) 914, 1081
TaiI ACGT 5 cut(s) 312, 552, 567, 1098, 1131
TaqI TCGA 2 cut(s) 210, 1104
TasI AATT 5 cut(s) 198, 570, 685, 691, 907
TfiI GAWTC 2 cut(s) 679, 1012
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 2 cut(s) 26, 784
TseFI GTSAC 3 cut(s) 113, 922, 1175
TseI GCWGC 8 cut(s) 57, 76, 277, 455, 458, 554, 606, 827
Tsp45I GTSAC 3 cut(s) 113, 922, 1175
TspDTI ATGAA 4 cut(s) 881, 890, 896, 1075
TspRI CASTG 2 cut(s) 26, 784
Tth111I GACNNNGTC 1 cut(s) 1154
Van91I CCANNNNNTGG 1 cut(s) 1197
VpaK11BI GGWCC 1 cut(s) 1118
XapI RAATTY 1 cut(s) 198
XceI RCATGY 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 1 cut(s) 174
XspI CTAG 3 cut(s) 27, 174, 987
ZraI GACGTC 1 cut(s) 1096
Zsp2I ATGCAT 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.