pycom05g28410

WUSCHEL-related homeobox

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
29150991 .. 29153539
2549 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g28410.2

Sequence Viewer

Length: 1236 bp
ATGGCTTCATCAAACAGACACTGGCCAAGCATGTTCAAGTCCAAGCCTGCTAATTGCAGCACCCACCACCAATGGCAGCATGACATCAACCCTTCTCTTGTCTCAAACGGCTGCCACCGACCCTCCTCCTACTCCTCAGTTGGAGGGTGTGAAGAACGCAGTCCGGAGCCAAAACCTAGATGGAACCCGAAACCGGAGCAAATTCGCATACTCGAAGCAATCTTCAACTCCGGGATGGTGAATCCTCCGAGGGATGAGATCAGGAAGATTAGGGTTCAGCTGCAAGAGTACGGTCAAGTCGGAGACGCCAATGTGTTCTACTGGTTCCAGAACCGAAAGTCAAGAAGCAAGCACAAGCTCCGCAACCTCCACAACTCATCCAGGCAACAACAAACCCACCATCACCACACCCAGCTTCCTATCTCCACCCCCGTCTCTGCCGCCACCACTCTCAACATCATCAATGCCGCCGCCCCTTCGTCCTCGTCCTCATCGTCCTCCGAAAAGTCATCCCCCAAAGCACCAAACAAGGCCTTCTCCATGGGGTTCTCCACTCATGAGGCTTCAGTCAACTCTCCAACTGCTTCTGTGAACCAAAGCACTAACTTTTTCCAGCCTCACCATCCTCTCCACAACGAGGTCTTGCTCGAATCTCCGTTCTTTTTTCCAATGCATCAGGCCAACATTAATCCTAATTTGACACAAGGGTTCTGCTTCTCTGAGCTGGCTAATGTGGTTAATGTTCCACGTCATGAGCAAACCAATAATAATAATAACAACATTGGGCCTTGCACTAATATCCTGCTGAGTGAGATCATGAACCATGGAGCAATATCAAGGAAAGAATATCACCACCATCAGGAAGATCAGATCAAGGCCATGAAGAATGTGGATCATCAGCAACACCTCAATTACAATATCGATACCACCACAACTCCAACTACTGCTGCAGCTTCTACTACTCCTACTGTCGCTGTTCCATCCCCCGTGATCCACAATAGTCGAGGCGGTGTTGGTGAAGCGGGTGCAATGGCTCCGGGAGGTGTGGCGAAATCAACGGTGTTCATAAACGACGTCGCATTCGAGGTGGGTGTGGGTCCCTTCAACGTGCGTGAGGCTTTCGGGGATGACGCCGTTCTCATTCACTCCTCTGGTCAGCCCGTTCTCACCAATGAGTGGGGTCTCACCCTCCACTCTCTCCACCACGGTGATATAGAAGAGGTGGAAGCTAGCTAG

Protein Analysis

412

Amino Acids

45.29

Weight (kDa)

6.99

Isoelectric Point (pI)

57.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1077
AccB7I CCANNNNNTGG 1 cut(s) 1176
AccIII TCCGGA 1 cut(s) 163
AciI CCGC 6 cut(s) 361, 441, 468, 471, 1008, 1022
AclWI GGATC 2 cut(s) 900, 985
AcoI YGGCCR 1 cut(s) 23
AcsI RAATTY 1 cut(s) 201
AcuI CTGAAG 1 cut(s) 549
AcyI GRCGYC 3 cut(s) 306, 1074, 1131
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 4 cut(s) 193, 637, 859, 1176
AgsI TTSAA 3 cut(s) 37, 226, 1105
AjiI CACGTC 1 cut(s) 749
AjnI CCWGG 1 cut(s) 380
AleI CACNNNNGTG 1 cut(s) 1206
AluBI AGCT 7 cut(s) 280, 358, 415, 724, 953, 1229, 1233
AluI AGCT 7 cut(s) 280, 358, 415, 724, 953, 1229, 1233
Alw26I GTCTC 4 cut(s) 106, 297, 439, 1187
AlwI GGATC 2 cut(s) 900, 985
AlwNI CAGNNNCTG 1 cut(s) 21
Aor13HI TCCGGA 1 cut(s) 163
AoxI GGCC 5 cut(s) 23, 531, 678, 785, 876
ApeKI GCWGC 6 cut(s) 57, 76, 111, 280, 947, 950
ApoI RAATTY 1 cut(s) 201
ArsI GACNNNNNNTTYG 2 cut(s) 1064, 1096
AseI ATTAAT 1 cut(s) 687
AspS9I GGNCC 2 cut(s) 785, 1097
AsuC2I CCSGG 2 cut(s) 232, 1038
AsuHPI GGTGA 8 cut(s) 250, 395, 611, 842, 1028, 1159, 1177, 1220
AsuNHI GCTAGC 1 cut(s) 1229
AvaII GGWCC 1 cut(s) 1097
BalI TGGCCA 1 cut(s) 25
BbvI GCAGC 6 cut(s) 69, 88, 98, 267, 934, 962
BccI CCATC 6 cut(s) 174, 229, 408, 630, 864, 988
BceAI ACGGC 2 cut(s) 124, 1118
BciT130I CCWGG 1 cut(s) 382
BcnI CCSGG 2 cut(s) 232, 1038
BcoDI GTCTC 4 cut(s) 106, 297, 439, 1187
BfaI CTAG 3 cut(s) 177, 1230, 1234
BfmI CTRYAG 1 cut(s) 948
BisI GCNGC 9 cut(s) 58, 77, 112, 281, 441, 468, 471, 948, 951
BlsI GCNGC 9 cut(s) 59, 78, 113, 282, 442, 469, 472, 949, 952
Bme1390I CCNGG 3 cut(s) 232, 382, 1038
Bme18I GGWCC 1 cut(s) 1097
BmgBI CACGTC 1 cut(s) 749
BmgT120I GGNCC 2 cut(s) 785, 1097
BmiI GGNNCC 6 cut(s) 168, 185, 326, 1035, 1098, 1099
BmrFI CCNGG 3 cut(s) 232, 382, 1038
BmsI GCATC 1 cut(s) 682
BmtI GCTAGC 1 cut(s) 1233
BpuMI CCSGG 2 cut(s) 232, 1038
Bsa29I ATCGAT 1 cut(s) 921
BsaHI GRCGYC 3 cut(s) 306, 1074, 1131
BsaI GGTCTC 1 cut(s) 1187
BsaJI CCNNGG 4 cut(s) 248, 540, 823, 1204
BsaWI WCCGGW 2 cut(s) 163, 193
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 919, 949
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 637, 859, 1176
Bse1I ACTGG 2 cut(s) 26, 326
Bse3DI GCAATG 1 cut(s) 1035
BseAI TCCGGA 1 cut(s) 163
BseBI CCWGG 1 cut(s) 382
BseCI ATCGAT 1 cut(s) 921
BseDI CCNNGG 4 cut(s) 248, 540, 823, 1204
BseGI GGATG 7 cut(s) 240, 259, 377, 509, 622, 980, 1132
BseLI CCNNNNNNNGG 4 cut(s) 193, 637, 859, 1176
BseMI GCAATG 1 cut(s) 1035
BseMII CTCAG 3 cut(s) 150, 711, 797
BseNI ACTGG 2 cut(s) 26, 326
BseRI GAGGAG 3 cut(s) 115, 124, 1138
BseXI GCAGC 6 cut(s) 69, 88, 98, 267, 934, 962
BseYI CCCAGC 1 cut(s) 411
BshFI GGCC 5 cut(s) 25, 533, 680, 787, 878
BshVI ATCGAT 1 cut(s) 921
BsiSI CCGG 4 cut(s) 164, 194, 231, 1037
BslFI GGGAC 1 cut(s) 1083
BslI CCNNNNNNNGG 4 cut(s) 193, 637, 859, 1176
BsmAI GTCTC 4 cut(s) 106, 297, 439, 1187
BsmBI CGTCTC 2 cut(s) 297, 439
BsmFI GGGAC 1 cut(s) 1083
BsmI GAATGC 1 cut(s) 1079
BsnI GGCC 5 cut(s) 25, 533, 680, 787, 878
Bso31I GGTCTC 1 cut(s) 1187
Bsp13I TCCGGA 1 cut(s) 163
Bsp143I GATC 6 cut(s) 258, 813, 865, 870, 892, 990
Bsp19I CCATGG 2 cut(s) 540, 823
BspACI CCGC 6 cut(s) 361, 441, 468, 471, 1008, 1022
BspANI GGCC 5 cut(s) 25, 533, 680, 787, 878
BspCNI CTCAG 3 cut(s) 149, 712, 798
BspDI ATCGAT 1 cut(s) 921
BspEI TCCGGA 1 cut(s) 163
BspHI TCATGA 3 cut(s) 556, 751, 816
BspLI GGNNCC 6 cut(s) 168, 185, 326, 1035, 1098, 1099
BspMAI CTGCAG 1 cut(s) 952
BspOI GCTAGC 1 cut(s) 1233
BspPI GGATC 2 cut(s) 900, 985
BspTNI GGTCTC 1 cut(s) 1187
BsrDI GCAATG 1 cut(s) 1035
BsrI ACTGG 2 cut(s) 26, 326
BssECI CCNNGG 4 cut(s) 248, 540, 823, 1204
BssMI GATC 6 cut(s) 258, 813, 865, 870, 892, 990
BssNI GRCGYC 3 cut(s) 306, 1074, 1131
BssT1I CCWWGG 2 cut(s) 540, 823
Bst2UI CCWGG 1 cut(s) 382
Bst4CI ACNGT 4 cut(s) 293, 970, 1060, 1208
Bst6I CTCTTC 1 cut(s) 1212
BstACI GRCGYC 3 cut(s) 306, 1074, 1131
BstC8I GCNNGC 4 cut(s) 48, 350, 726, 1231
BstDEI CTNAG 3 cut(s) 136, 720, 806
BstDSI CCRYGG 3 cut(s) 540, 823, 1204
BstF5I GGATG 7 cut(s) 240, 259, 377, 509, 622, 980, 1132
BstKTI GATC 6 cut(s) 261, 816, 868, 873, 895, 993
BstMAI GTCTC 4 cut(s) 106, 297, 439, 1187
BstMBI GATC 6 cut(s) 258, 813, 865, 870, 892, 990
BstNI CCWGG 1 cut(s) 382
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 3 cut(s) 230, 380, 1036
BstSFI CTRYAG 1 cut(s) 948
BstV1I GCAGC 6 cut(s) 69, 88, 98, 267, 934, 962
Bsu15I ATCGAT 1 cut(s) 921
BsuRI GGCC 5 cut(s) 25, 533, 680, 787, 878
BsuTUI ATCGAT 1 cut(s) 921
BtgI CCRYGG 3 cut(s) 540, 823, 1204
BtrI CACGTC 1 cut(s) 749
BtsCI GGATG 7 cut(s) 240, 259, 377, 509, 622, 980, 1132
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 4 cut(s) 48, 350, 726, 1231
CaiI CAGNNNCTG 1 cut(s) 21
CciI TCATGA 3 cut(s) 556, 751, 816
Cfr13I GGNCC 2 cut(s) 785, 1097
ClaI ATCGAT 1 cut(s) 921
CseI GACGC 2 cut(s) 314, 1139
Csp6I GTAC 1 cut(s) 289
CviAII CATG 8 cut(s) 31, 80, 541, 557, 752, 817, 824, 880
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 3 cut(s) 136, 720, 806
DpnI GATC 6 cut(s) 260, 815, 867, 872, 894, 992
DpnII GATC 6 cut(s) 258, 813, 865, 870, 892, 990
EaeI YGGCCR 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 1212
EarI CTCTTC 1 cut(s) 1212
Eco130I CCWWGG 2 cut(s) 540, 823
Eco147I AGGCCT 1 cut(s) 533
Eco31I GGTCTC 1 cut(s) 1187
Eco47I GGWCC 1 cut(s) 1097
Eco57I CTGAAG 1 cut(s) 549
EcoO109I RGGNCCY 1 cut(s) 1097
EcoRII CCWGG 1 cut(s) 380
EcoT14I CCWWGG 2 cut(s) 540, 823
EcoT22I ATGCAT 1 cut(s) 675
ErhI CCWWGG 2 cut(s) 540, 823
Esp3I CGTCTC 2 cut(s) 297, 439
FaeI CATG 8 cut(s) 34, 83, 544, 560, 755, 820, 827, 883
FaqI GGGAC 1 cut(s) 1083
FatI CATG 8 cut(s) 30, 79, 540, 556, 751, 816, 823, 879
FauI CCCGC 1 cut(s) 1015
Fnu4HI GCNGC 9 cut(s) 58, 77, 112, 281, 441, 468, 471, 948, 951
FokI GGATG 7 cut(s) 247, 266, 364, 496, 609, 967, 1139
Fsp4HI GCNGC 9 cut(s) 58, 77, 112, 281, 441, 468, 471, 948, 951
FspBI CTAG 3 cut(s) 177, 1230, 1234
GluI GCNGC 9 cut(s) 58, 77, 112, 281, 441, 468, 471, 948, 951
GsaI CCCAGC 1 cut(s) 415
HaeIII GGCC 5 cut(s) 25, 533, 680, 787, 878
HapII CCGG 4 cut(s) 164, 194, 231, 1037
HgaI GACGC 2 cut(s) 314, 1139
Hin1I GRCGYC 3 cut(s) 306, 1074, 1131
Hin1II CATG 8 cut(s) 34, 83, 544, 560, 755, 820, 827, 883
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HinfI GANTC 2 cut(s) 241, 650
HpaII CCGG 4 cut(s) 164, 194, 231, 1037
HphI GGTGA 8 cut(s) 250, 395, 611, 842, 1028, 1159, 1177, 1220
Hpy166II GTNNAC 2 cut(s) 571, 592
Hpy188I TCNGA 5 cut(s) 249, 302, 502, 721, 870
Hpy188III TCNNGA 8 cut(s) 164, 262, 328, 342, 557, 752, 817, 860
Hpy8I GTNNAC 2 cut(s) 571, 592
Hpy99I CGWCG 2 cut(s) 1076, 1079
HpyAV CCTTC 4 cut(s) 102, 486, 544, 1111
HpyCH4III ACNGT 4 cut(s) 293, 970, 1060, 1208
HpyCH4IV ACGT 3 cut(s) 748, 1074, 1107
HpyCH4V TGCA 6 cut(s) 57, 283, 673, 792, 950, 1028
HpyF3I CTNAG 3 cut(s) 136, 720, 806
HpySE526I ACGT 3 cut(s) 748, 1074, 1107
Hsp92I GRCGYC 3 cut(s) 306, 1074, 1131
Hsp92II CATG 8 cut(s) 34, 83, 544, 560, 755, 820, 827, 883
KflI GGGWCCC 1 cut(s) 1097
Kpn2I TCCGGA 1 cut(s) 163
Kzo9I GATC 6 cut(s) 258, 813, 865, 870, 892, 990
LmnI GCTCC 5 cut(s) 166, 196, 363, 827, 1039
Lsp1109I GCAGC 6 cut(s) 69, 88, 98, 267, 934, 962
LweI GCATC 1 cut(s) 682
MaeI CTAG 3 cut(s) 177, 1230, 1234
MaeII ACGT 3 cut(s) 748, 1074, 1107
MalI GATC 6 cut(s) 260, 815, 867, 872, 894, 992
MboI GATC 6 cut(s) 258, 813, 865, 870, 892, 990
MboII GAAGA 6 cut(s) 164, 214, 277, 875, 895, 1229
MlsI TGGCCA 1 cut(s) 25
MluCI AATT 4 cut(s) 52, 201, 694, 910
MluNI TGGCCA 1 cut(s) 25
MmeI TCCRAC 4 cut(s) 121, 280, 602, 962
Mox20I TGGCCA 1 cut(s) 25
Mph1103I ATGCAT 1 cut(s) 675
MroI TCCGGA 1 cut(s) 163
MscI TGGCCA 1 cut(s) 25
MseI TTAA 2 cut(s) 687, 738
MslI CAYNNNNRTG 1 cut(s) 1206
Msp20I TGGCCA 1 cut(s) 25
MspA1I CMGCKG 1 cut(s) 280
MspI CCGG 4 cut(s) 164, 194, 231, 1037
MspR9I CCNGG 3 cut(s) 232, 382, 1038
Mva1269I GAATGC 1 cut(s) 1079
MvaI CCWGG 1 cut(s) 382
NciI CCSGG 2 cut(s) 232, 1038
NcoI CCATGG 2 cut(s) 540, 823
NdeII GATC 6 cut(s) 258, 813, 865, 870, 892, 990
NheI GCTAGC 1 cut(s) 1229
NlaIII CATG 8 cut(s) 34, 83, 544, 560, 755, 820, 827, 883
NlaIV GGNNCC 6 cut(s) 168, 185, 326, 1035, 1098, 1099
NsiI ATGCAT 1 cut(s) 675
NspI RCATGY 1 cut(s) 34
OliI CACNNNNGTG 1 cut(s) 1206
PagI TCATGA 3 cut(s) 556, 751, 816
PceI AGGCCT 1 cut(s) 533
PcsI WCGNNNNNNNCGW 2 cut(s) 491, 1080
PctI GAATGC 1 cut(s) 1079
PfeI GAWTC 2 cut(s) 241, 650
PflMI CCANNNNNTGG 1 cut(s) 1176
PfoI TCCNGGA 2 cut(s) 230, 1036
PkrI GCNGC 9 cut(s) 59, 78, 113, 282, 442, 469, 472, 949, 952
PpuMI RGGWCCY 1 cut(s) 1097
PshBI ATTAAT 1 cut(s) 687
Psp5II RGGWCCY 1 cut(s) 1097
Psp6I CCWGG 1 cut(s) 380
PspFI CCCAGC 1 cut(s) 411
PspGI CCWGG 1 cut(s) 380
PspN4I GGNNCC 6 cut(s) 168, 185, 326, 1035, 1098, 1099
PspPI GGNCC 2 cut(s) 785, 1097
PspPPI RGGWCCY 1 cut(s) 1097
PstI CTGCAG 1 cut(s) 952
PstNI CAGNNNCTG 1 cut(s) 21
PvuII CAGCTG 1 cut(s) 280
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 1206
SaqAI TTAA 2 cut(s) 687, 738
SatI GCNGC 9 cut(s) 58, 77, 112, 281, 441, 468, 471, 948, 951
Sau3AI GATC 6 cut(s) 258, 813, 865, 870, 892, 990
Sau96I GGNCC 2 cut(s) 785, 1097
ScrFI CCNGG 3 cut(s) 232, 382, 1038
SfaNI GCATC 1 cut(s) 682
SfcI CTRYAG 1 cut(s) 948
SinI GGWCC 1 cut(s) 1097
SmiMI CAYNNNNRTG 1 cut(s) 1206
Sse9I AATT 4 cut(s) 52, 201, 694, 910
SseBI AGGCCT 1 cut(s) 533
SsiI CCGC 6 cut(s) 361, 441, 468, 471, 1008, 1022
SspMI CTAG 3 cut(s) 177, 1230, 1234
StuI AGGCCT 1 cut(s) 533
StyD4I CCNGG 3 cut(s) 230, 380, 1036
StyI CCWWGG 2 cut(s) 540, 823
TaaI ACNGT 4 cut(s) 293, 970, 1060, 1208
TaiI ACGT 3 cut(s) 751, 1077, 1110
TaqI TCGA 5 cut(s) 213, 648, 921, 1003, 1083
TasI AATT 4 cut(s) 52, 201, 694, 910
TauI GCSGC 3 cut(s) 443, 470, 473
TfiI GAWTC 2 cut(s) 241, 650
Tru1I TTAA 2 cut(s) 687, 738
Tru9I TTAA 2 cut(s) 687, 738
TscAI CASTG 1 cut(s) 26
TseI GCWGC 6 cut(s) 57, 76, 111, 280, 947, 950
TspDTI ATGAA 3 cut(s) 833, 896, 1054
TspGWI ACGGA 1 cut(s) 645
TspRI CASTG 1 cut(s) 26
Van91I CCANNNNNTGG 1 cut(s) 1176
VpaK11BI GGWCC 1 cut(s) 1097
VspI ATTAAT 1 cut(s) 687
XapI RAATTY 1 cut(s) 201
XceI RCATGY 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 2 cut(s) 177, 886
XspI CTAG 3 cut(s) 177, 1230, 1234
ZraI GACGTC 1 cut(s) 1075
Zsp2I ATGCAT 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.