FvH4_3g10130

WUSCHEL-related homeobox

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
5896076 .. 5898269
2194 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g10130.t3

Sequence Viewer

Length: 909 bp
ATGGCTTCTTCAAACAGACACTGGCCTAACATGTTCAAATCCAAACCCACCCACCAGTACCGATGGCAGCATGACGCCGTCAATCCCTCTCTCGTGCCAAACGGTTACTCAACCGCTACAACATCATCAGGGCTGGAAGATGAAATGACTCCGGAGCCAAAGCGGCGGTGGATCCCTCGGCCGGAGCAGATTGGGATTCTGGAAGCTATTTTCAACTCCGGGATGGTGAACCCTTCGAGGGAGGAGGTAAGGATGATCACGGCTCAGCTCCAAGAGTACGGTCAAGTCGTTGACGCCAATGTCTTCTACTGGTTCCAGAACAGAAAATCAAGGTCCAAACACAAGCATCGCCGCCTGCAGTACTCAAACAAGACCCAATTCTCACCACCACCACCACATGATGTTTGCAACTTAAACTCTCCGACCGCTTCTTCGGTCAATCAGACGTCTTTTTTTCCAAACCCTGAGGTCTTTCCAGTGAACAACCCTGCTGCTTCTTCTAGCAACGGGCCGGTAGCAAGTGCTGATTTCAGTACTACGCAAGGGTTTTACTTCTCTGAGCTCGCGAATGTGGTTCATGGGAATAACAGTCCCGATCTTCATCATACTGGTCTCTTGCTTAGTGAGATTATGAACAACAATGGGATGGCCTCCCCCATGAGTACTCACTTTCAAGTTATTGGAGGGGAAGCTGGTGCTGCGATAATGGGAGCGGGAGGTGCGGCGGCGATATCAACGGTGTTCATAAACGACGTCGCATTTGAGGTGGCTGAGGGACCCTTCAACGTGCGTGAGGCTTTCGGGGACGACGCCGTTCTCATTCACTCTTCTGGTCACCCTGTTCTCACCAACGAGTGGGGAGTTACCCTTCACTCTCTTCACCACGGCGCATTTTATTACCTCATTTAG

Protein Analysis

303

Amino Acids

33.24

Weight (kDa)

6.18

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 51 - 110 2.1e-11 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
AatII GACGTC 2 cut(s) 449, 756
AccB7I CCANNNNNTGG 1 cut(s) 855
AccBSI CCGCTC 1 cut(s) 713
AccII CGCG 1 cut(s) 566
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 8 cut(s) 114, 163, 166, 352, 426, 713, 722, 725
AclWI GGATC 2 cut(s) 166, 179
AcoI YGGCCR 1 cut(s) 179
AcyI GRCGYC 5 cut(s) 75, 294, 446, 753, 810
AfaI GTAC 5 cut(s) 59, 278, 362, 535, 664
AfiI CCNNNNNNNGG 3 cut(s) 181, 238, 855
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 5 cut(s) 12, 37, 214, 674, 784
AluBI AGCT 4 cut(s) 206, 268, 562, 692
AluI AGCT 4 cut(s) 206, 268, 562, 692
Alw21I GWGCWC 1 cut(s) 564
Alw26I GTCTC 1 cut(s) 617
AlwI GGATC 2 cut(s) 166, 179
AlwNI CAGNNNCTG 1 cut(s) 21
Aor13HI TCCGGA 1 cut(s) 151
AoxI GGCC 4 cut(s) 23, 179, 509, 648
ApeKI GCWGC 3 cut(s) 67, 491, 698
ArsI GACNNNNNNTTYG 4 cut(s) 415, 447, 743, 775
AspLEI GCGC 1 cut(s) 890
AspS9I GGNCC 3 cut(s) 333, 509, 776
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 5 cut(s) 238, 375, 827, 838, 872
AvaII GGWCC 2 cut(s) 333, 776
AxyI CCTNAGG 1 cut(s) 465
BamHI GGATCC 1 cut(s) 171
BanII GRGCYC 1 cut(s) 564
BauI CACGAG 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 564
BbvCI CCTCAGC 1 cut(s) 771
BbvI GCAGC 3 cut(s) 79, 478, 685
BccI CCATC 3 cut(s) 57, 217, 640
BceAI ACGGC 4 cut(s) 62, 276, 797, 901
BclI TGATCA 1 cut(s) 255
BcnI CCSGG 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 617
BfaI CTAG 1 cut(s) 501
BfmI CTRYAG 1 cut(s) 356
BglI GCCNNNNNGGC 1 cut(s) 163
BisI GCNGC 7 cut(s) 68, 164, 352, 492, 699, 723, 726
BlpI GCTNAGC 1 cut(s) 264
BlsI GCNGC 7 cut(s) 69, 165, 353, 493, 700, 724, 727
BmcAI AGTACT 3 cut(s) 362, 535, 664
Bme1390I CCNGG 1 cut(s) 220
Bme18I GGWCC 2 cut(s) 333, 776
BmgT120I GGNCC 3 cut(s) 333, 509, 776
BmiI GGNNCC 5 cut(s) 156, 173, 314, 777, 778
BmrFI CCNGG 1 cut(s) 220
BmsI GCATC 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 295
Bpu10I CCTNAGC 1 cut(s) 771
Bpu1102I GCTNAGC 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 220
BsaBI GATNNNNATC 1 cut(s) 600
BsaHI GRCGYC 5 cut(s) 75, 294, 446, 753, 810
BsaI GGTCTC 1 cut(s) 617
BsaJI CCNNGG 2 cut(s) 176, 883
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 238, 855
Bse118I RCCGGY 1 cut(s) 511
Bse1I ACTGG 5 cut(s) 26, 55, 314, 476, 613
Bse21I CCTNAGG 1 cut(s) 465
Bse8I GATNNNNATC 1 cut(s) 600
BseAI TCCGGA 1 cut(s) 151
BseDI CCNNGG 2 cut(s) 176, 883
BseGI GGATG 3 cut(s) 228, 258, 651
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 3 cut(s) 181, 238, 855
BseMII CTCAG 4 cut(s) 278, 456, 549, 762
BseNI ACTGG 5 cut(s) 26, 55, 314, 476, 613
BseRI GAGGAG 1 cut(s) 257
BseX3I CGGCCG 1 cut(s) 179
BseXI GCAGC 3 cut(s) 79, 478, 685
Bsh1236I CGCG 1 cut(s) 566
Bsh1285I CGRYCG 2 cut(s) 182, 426
BshFI GGCC 4 cut(s) 25, 181, 511, 650
BsiEI CGRYCG 2 cut(s) 182, 426
BsiHKAI GWGCWC 1 cut(s) 564
BsiSI CCGG 4 cut(s) 152, 182, 219, 512
BslFI GGGAC 3 cut(s) 576, 789, 818
BslI CCNNNNNNNGG 3 cut(s) 181, 238, 855
BsmAI GTCTC 1 cut(s) 617
BsmFI GGGAC 3 cut(s) 576, 789, 818
BsnI GGCC 4 cut(s) 25, 181, 511, 650
Bso31I GGTCTC 1 cut(s) 617
Bsp1286I GDGCHC 1 cut(s) 564
Bsp13I TCCGGA 1 cut(s) 151
Bsp143I GATC 3 cut(s) 171, 255, 595
Bsp1720I GCTNAGC 1 cut(s) 264
Bsp68I TCGCGA 1 cut(s) 566
BspACI CCGC 8 cut(s) 114, 163, 166, 352, 426, 713, 722, 725
BspANI GGCC 4 cut(s) 25, 181, 511, 650
BspCNI CTCAG 4 cut(s) 277, 457, 550, 763
BspEI TCCGGA 1 cut(s) 151
BspFNI CGCG 1 cut(s) 566
BspLI GGNNCC 5 cut(s) 156, 173, 314, 777, 778
BspMAI CTGCAG 1 cut(s) 360
BspPI GGATC 2 cut(s) 166, 179
BspTNI GGTCTC 1 cut(s) 617
BsrBI CCGCTC 1 cut(s) 713
BsrFI RCCGGY 1 cut(s) 511
BsrI ACTGG 5 cut(s) 26, 55, 314, 476, 613
BssAI RCCGGY 1 cut(s) 511
BssECI CCNNGG 2 cut(s) 176, 883
BssMI GATC 3 cut(s) 171, 255, 595
BssNI GRCGYC 5 cut(s) 75, 294, 446, 753, 810
BssSI CACGAG 1 cut(s) 92
Bst2BI CACGAG 1 cut(s) 92
Bst4CI ACNGT 4 cut(s) 104, 281, 590, 739
Bst6I CTCTTC 2 cut(s) 832, 882
BstACI GRCGYC 5 cut(s) 75, 294, 446, 753, 810
BstC8I GCNNGC 2 cut(s) 356, 564
BstDEI CTNAG 5 cut(s) 264, 465, 558, 620, 771
BstDSI CCRYGG 1 cut(s) 883
BstEII GGTNACC 1 cut(s) 833
BstF5I GGATG 3 cut(s) 228, 258, 651
BstFNI CGCG 1 cut(s) 566
BstHHI GCGC 1 cut(s) 890
BstKTI GATC 3 cut(s) 174, 258, 598
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 3 cut(s) 171, 255, 595
BstMCI CGRYCG 2 cut(s) 182, 426
BstMWI GCNNNNNNNGC 3 cut(s) 163, 698, 719
BstNSI RCATGY 1 cut(s) 34
BstPI GGTNACC 1 cut(s) 833
BstSCI CCNGG 1 cut(s) 218
BstSFI CTRYAG 1 cut(s) 356
BstUI CGCG 1 cut(s) 566
BstV1I GCAGC 3 cut(s) 79, 478, 685
BstV2I GAAGAC 1 cut(s) 295
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BstZI CGGCCG 1 cut(s) 179
Bsu36I CCTNAGG 1 cut(s) 465
BsuRI GGCC 4 cut(s) 25, 181, 511, 650
BtgI CCRYGG 1 cut(s) 883
BtgZI GCGATG 1 cut(s) 332
BtsCI GGATG 3 cut(s) 228, 258, 651
BtsIMutI CAGTG 2 cut(s) 19, 483
BtuMI TCGCGA 1 cut(s) 566
Cac8I GCNNGC 2 cut(s) 356, 564
CaiI CAGNNNCTG 1 cut(s) 21
CfoI GCGC 1 cut(s) 890
Cfr10I RCCGGY 1 cut(s) 511
Cfr13I GGNCC 3 cut(s) 333, 509, 776
CseI GACGC 3 cut(s) 83, 302, 818
Csp6I GTAC 5 cut(s) 58, 277, 361, 534, 663
CviAII CATG 5 cut(s) 31, 71, 398, 578, 658
CviQI GTAC 5 cut(s) 58, 277, 361, 534, 663
DdeI CTNAG 5 cut(s) 264, 465, 558, 620, 771
DpnI GATC 3 cut(s) 173, 257, 597
DpnII GATC 3 cut(s) 171, 255, 595
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
EaeI YGGCCR 1 cut(s) 179
EagI CGGCCG 1 cut(s) 179
Eam1104I CTCTTC 2 cut(s) 832, 882
EarI CTCTTC 2 cut(s) 832, 882
Ecl136II GAGCTC 1 cut(s) 562
EclXI CGGCCG 1 cut(s) 179
Eco24I GRGCYC 1 cut(s) 564
Eco31I GGTCTC 1 cut(s) 617
Eco32I GATATC 1 cut(s) 732
Eco47I GGWCC 2 cut(s) 333, 776
Eco52I CGGCCG 1 cut(s) 179
Eco53kI GAGCTC 1 cut(s) 562
Eco81I CCTNAGG 1 cut(s) 465
Eco91I GGTNACC 1 cut(s) 833
EcoICRI GAGCTC 1 cut(s) 562
EcoO109I RGGNCCY 1 cut(s) 776
EcoO65I GGTNACC 1 cut(s) 833
EcoRV GATATC 1 cut(s) 732
EcoT38I GRGCYC 1 cut(s) 564
FaeI CATG 5 cut(s) 34, 74, 401, 581, 661
FaiI YATR 8 cut(s) 32, 72, 399, 579, 606, 632, 659, 746
FaqI GGGAC 3 cut(s) 576, 789, 818
FatI CATG 5 cut(s) 30, 70, 397, 577, 657
FauI CCCGC 1 cut(s) 706
FbaI TGATCA 1 cut(s) 255
Fnu4HI GCNGC 7 cut(s) 68, 164, 352, 492, 699, 723, 726
FokI GGATG 3 cut(s) 235, 265, 658
FriOI GRGCYC 1 cut(s) 564
Fsp4HI GCNGC 7 cut(s) 68, 164, 352, 492, 699, 723, 726
FspBI CTAG 1 cut(s) 501
GlaI GCGC 1 cut(s) 889
GluI GCNGC 7 cut(s) 68, 164, 352, 492, 699, 723, 726
HaeIII GGCC 4 cut(s) 25, 181, 511, 650
HapII CCGG 4 cut(s) 152, 182, 219, 512
HgaI GACGC 3 cut(s) 83, 302, 818
HhaI GCGC 1 cut(s) 890
Hin1I GRCGYC 5 cut(s) 75, 294, 446, 753, 810
Hin1II CATG 5 cut(s) 34, 74, 401, 581, 661
Hin6I GCGC 1 cut(s) 888
HinP1I GCGC 1 cut(s) 888
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 2 cut(s) 148, 196
HpaII CCGG 4 cut(s) 152, 182, 219, 512
HphI GGTGA 5 cut(s) 238, 375, 827, 838, 872
Hpy166II GTNNAC 3 cut(s) 229, 292, 481
Hpy188I TCNGA 3 cut(s) 423, 444, 559
Hpy188III TCNNGA 5 cut(s) 152, 200, 316, 565, 593
Hpy8I GTNNAC 3 cut(s) 229, 292, 481
Hpy99I CGWCG 3 cut(s) 755, 758, 812
HpyAV CCTTC 3 cut(s) 243, 790, 878
HpyCH4III ACNGT 4 cut(s) 104, 281, 590, 739
HpyCH4IV ACGT 3 cut(s) 446, 753, 786
HpyCH4V TGCA 2 cut(s) 358, 408
HpyF10VI GCNNNNNNNGC 3 cut(s) 163, 698, 719
HpyF3I CTNAG 5 cut(s) 264, 465, 558, 620, 771
HpySE526I ACGT 3 cut(s) 446, 753, 786
Hsp92I GRCGYC 5 cut(s) 75, 294, 446, 753, 810
Hsp92II CATG 5 cut(s) 34, 74, 401, 581, 661
HspAI GCGC 1 cut(s) 888
KflI GGGWCCC 1 cut(s) 776
Kpn2I TCCGGA 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 255
Kzo9I GATC 3 cut(s) 171, 255, 595
LmnI GCTCC 4 cut(s) 154, 184, 273, 710
Lsp1109I GCAGC 3 cut(s) 79, 478, 685
LweI GCATC 1 cut(s) 355
MaeI CTAG 1 cut(s) 501
MaeII ACGT 3 cut(s) 446, 753, 786
MaeIII GTNAC 3 cut(s) 104, 833, 862
MalI GATC 3 cut(s) 173, 257, 597
MbiI CCGCTC 1 cut(s) 713
MboI GATC 3 cut(s) 171, 255, 595
MboII GAAGA 7 cut(s) 149, 295, 423, 489, 590, 819, 869
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 564
MluCI AATT 1 cut(s) 377
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 446
MroI TCCGGA 1 cut(s) 151
MseI TTAA 1 cut(s) 413
MspI CCGG 4 cut(s) 152, 182, 219, 512
MspR9I CCNGG 1 cut(s) 220
MvnI CGCG 1 cut(s) 566
MwoI GCNNNNNNNGC 3 cut(s) 163, 698, 719
NciI CCSGG 1 cut(s) 220
NdeII GATC 3 cut(s) 171, 255, 595
NlaIII CATG 5 cut(s) 34, 74, 401, 581, 661
NlaIV GGNNCC 5 cut(s) 156, 173, 314, 777, 778
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 833
NruI TCGCGA 1 cut(s) 566
NspI RCATGY 1 cut(s) 34
PciI ACATGT 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PfeI GAWTC 1 cut(s) 196
PflFI GACNNNGTC 1 cut(s) 77
PflMI CCANNNNNTGG 1 cut(s) 855
PfoI TCCNGGA 1 cut(s) 218
PkrI GCNGC 7 cut(s) 69, 165, 353, 493, 700, 724, 727
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PpuMI RGGWCCY 1 cut(s) 776
PscI ACATGT 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 564
Psp5II RGGWCCY 1 cut(s) 776
PspEI GGTNACC 1 cut(s) 833
PspN4I GGNNCC 5 cut(s) 156, 173, 314, 777, 778
PspPI GGNCC 3 cut(s) 333, 509, 776
PspPPI RGGWCCY 1 cut(s) 776
PstI CTGCAG 1 cut(s) 360
PstNI CAGNNNCTG 1 cut(s) 21
PsuI RGATCY 1 cut(s) 171
PsyI GACNNNGTC 1 cut(s) 77
RruI TCGCGA 1 cut(s) 566
RsaI GTAC 5 cut(s) 59, 278, 362, 535, 664
RsaNI GTAC 5 cut(s) 58, 277, 361, 534, 663
SacI GAGCTC 1 cut(s) 564
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 7 cut(s) 68, 164, 352, 492, 699, 723, 726
Sau3AI GATC 3 cut(s) 171, 255, 595
Sau96I GGNCC 3 cut(s) 333, 509, 776
ScaI AGTACT 3 cut(s) 362, 535, 664
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 220
SduI GDGCHC 1 cut(s) 564
SfaNI GCATC 1 cut(s) 355
SfcI CTRYAG 1 cut(s) 356
SinI GGWCC 2 cut(s) 333, 776
Sse9I AATT 1 cut(s) 377
SsiI CCGC 8 cut(s) 114, 163, 166, 352, 426, 713, 722, 725
SspMI CTAG 1 cut(s) 501
SstI GAGCTC 1 cut(s) 564
StyD4I CCNGG 1 cut(s) 218
TaaI ACNGT 4 cut(s) 104, 281, 590, 739
TaiI ACGT 3 cut(s) 449, 756, 789
TaqI TCGA 1 cut(s) 236
TaqII GACCGA 1 cut(s) 424
TasI AATT 1 cut(s) 377
TatI WGTACW 3 cut(s) 360, 533, 662
TauI GCSGC 4 cut(s) 166, 354, 725, 728
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TscAI CASTG 2 cut(s) 26, 483
TseFI GTSAC 1 cut(s) 833
TseI GCWGC 3 cut(s) 67, 491, 698
Tsp45I GTSAC 1 cut(s) 833
TspDTI ATGAA 5 cut(s) 156, 566, 590, 647, 733
TspRI CASTG 2 cut(s) 26, 483
Tth111I GACNNNGTC 1 cut(s) 77
Van91I CCANNNNNTGG 1 cut(s) 855
VpaK11BI GGWCC 2 cut(s) 333, 776
XceI RCATGY 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 1 cut(s) 165
XspI CTAG 1 cut(s) 501
ZraI GACGTC 2 cut(s) 447, 754
ZrmI AGTACT 3 cut(s) 362, 535, 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.