Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006673

Physical Location & Seq

Genomic Coordinates Forward (+)

37602278 .. 37606139

Gene Structure 3862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1286500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGCTTCATCAAACAGACACTGGCCAAGCATGTTCAAGTCCAAGCCTGCTGATTGCAGCACGCACCACCAATGGCAGCATGACATCAGCCCTTCTCTCGTCTCAAACAGCTGCCACCGACCCTCCTCTTCCTCAGTGGGAGGGTGTGAAGAACGCAGTCCGGAGCCAAAACCCAGATGGAACCCAAAGCCGGAGCAAATTCGCATACTCGAAGCAATCTTCAACTCCGGGGTGGTGAATCCTCCGAGGGATGAGATCAGGAAGATTAGAGCTCAGCTGCAAGAGTACGGTCAAGTCGGAGACGCCAATGTGTTCTATTGGTTCCAAAACCGAAAGTCAAGAAGCAAGCACAAGCTCCGCAACCTCCACAACTTACCCAAGCAACAACAAACCCATCATCGCCACACCCATCTTCCTATCTCCACGCCCATCTCCGCAGCCACCACTCTCAACATCATCAATGCCGCCGCCCCTTCGTCGTCCTCGTCGTCCTCTGAAAAATCATCCCCCAAAGCACCAAACAACAAGGCTTTCTCCATGGGGTTCTCCACTCATGATGTTTCAATTATCTCTCCAATTGCTTCTGTGAACCAAAGCACTAACTTTTTCCAGCCTCACCATCCTCACCACAACGAGGTCTTGCCTGAATCGCCGTTCTTTTTTCCGGTGCATCAGGGCAACATTAATCCTAATTTGACACAAGGGTTTTGCTTATCTGAGCTGGCTAATGTGGTTCATGTTCCAAATCATGAGCAAACTAATAATAATAACATTGGACCTTGCACTAGTCTCCTGCTGAGTGAGATCATGAACCATGGGGGAATATCAAGGAAAGAATATCACCATCAGGAAGATCAGATCATGGCCATGAAGAATGTGGATAATCAGCAGCACCTGACATCTCCAACTACTGCTGTCGCTGCTTCTACTAATCCTACTGTTGCTGTTCCATCCCCCATGTTTCACAACATTCAAGGTAGTGTTGGCGAAGCGGGTGCAATGGCTCCGGGAGGTCCGGCGAAATCAACGGTATTCATAAACGACGTCGCATTCGAGGTGGGTGCGGGTCCCTTCAACGTGCGTGAGGCTTTCGGGGATGACGCCGTTCTCATTCACTCCTCCGGTCAGCCCGTTCTCACCAATGAGTGGGGTCTCACCCTCCACTCTCTCCACCATGGCTCTTTCTATTACCTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007163 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010075 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030010 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048608 GO:0048638 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090451 GO:0090691 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 map04550

Pfam Domains

Protein Families

Homeobox

Protein Analysis

400

Amino Acids

43.92

Weight (kDa)

7.45

Isoelectric Point (pI)

59.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	57 - 116	1.7e-11	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33880 AT2G33880
fragaria_vesca	FvH4_3g08310 FvH4_3g08310 FvH4_3g08310 FvH4_3g10130 FvH4_3g10130 FvH4_3g10130 FvH4_3g10130 FvH4_3g10130
malus_domestica	MD05G1307400.v1.1 MD10G1286500.v1.1
prunus_persica	Prupe.4G055300_v2.0.a1
pyrus_communis	pycom05g28410
rosa_chinensis	RchiOBHm_Chr5g0009691
rosa_laevigata	RLG00000031680
rosa_multiflora	Rmu_co8361113.1_g000001 Rmu_sc0019694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066520
rosa_rugosa	Rorug04G0444800 Rorug04G0444900
rosa_samantha	Rh5AG076400 Rh5BG071600 Rh5CG084200 Rh5DG072200
rosa_wichuraiana	Rw5G007040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1047
AccB7I	CCANNNNNTGG	1 cut(s)	1146
AccIII	TCCGGA	1 cut(s)	160
AciI	CCGC	6 cut(s)	358, 435, 465, 468, 992, 1064
AcoI	YGGCCR	2 cut(s)	23, 864
AcsI	RAATTY	1 cut(s)	198
AcyI	GRCGYC	3 cut(s)	303, 1044, 1101
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	3 cut(s)	190, 634, 1146
AgsI	TTSAA	5 cut(s)	37, 223, 564, 974, 1075
AhlI	ACTAGT	1 cut(s)	785
AluBI	AGCT	5 cut(s)	111, 272, 277, 355, 721
AluI	AGCT	5 cut(s)	111, 272, 277, 355, 721
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	4 cut(s)	106, 294, 794, 1157
AlwNI	CAGNNNCTG	2 cut(s)	21, 895
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	2 cut(s)	23, 864
ApeKI	GCWGC	7 cut(s)	57, 76, 111, 277, 437, 889, 920
ApoI	RAATTY	1 cut(s)	198
ArsI	GACNNNNNNTTYG	2 cut(s)	1034, 1066
AseI	ATTAAT	1 cut(s)	684
AspS9I	GGNCC	3 cut(s)	776, 1013, 1067
AsuC2I	CCSGG	2 cut(s)	229, 1008
AsuHPI	GGTGA	6 cut(s)	247, 608, 617, 833, 1129, 1147
AvaII	GGWCC	3 cut(s)	776, 1013, 1067
BalI	TGGCCA	2 cut(s)	25, 866
BanII	GRGCYC	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	7 cut(s)	69, 88, 98, 264, 449, 901, 907
BccI	CCATC	7 cut(s)	171, 402, 417, 437, 627, 852, 958
BceAI	ACGGC	2 cut(s)	637, 1088
BcgI	CGANNNNNNTGC	4 cut(s)	977, 1011, 1043, 1077
BcnI	CCSGG	2 cut(s)	229, 1008
BcoDI	GTCTC	4 cut(s)	106, 294, 794, 1157
BcuI	ACTAGT	1 cut(s)	785
BfaI	CTAG	1 cut(s)	786
BisI	GCNGC	9 cut(s)	58, 77, 112, 278, 438, 465, 468, 890, 921
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	9 cut(s)	59, 78, 113, 279, 439, 466, 469, 891, 922
Bme1390I	CCNGG	2 cut(s)	229, 1008
Bme18I	GGWCC	3 cut(s)	776, 1013, 1067
BmgT120I	GGNCC	3 cut(s)	776, 1013, 1067
BmiI	GGNNCC	6 cut(s)	165, 182, 323, 1005, 1068, 1069
BmrFI	CCNGG	2 cut(s)	229, 1008
BmsI	GCATC	1 cut(s)	679
Bpu1102I	GCTNAGC	1 cut(s)	273
BpuMI	CCSGG	2 cut(s)	229, 1008
BsaHI	GRCGYC	3 cut(s)	303, 1044, 1101
BsaI	GGTCTC	1 cut(s)	1157
BsaJI	CCNNGG	5 cut(s)	228, 245, 537, 814, 1174
BsaWI	WCCGGW	3 cut(s)	160, 664, 1121
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 634, 1146
Bse1I	ACTGG	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	1005
BseAI	TCCGGA	1 cut(s)	160
BseDI	CCNNGG	5 cut(s)	228, 245, 537, 814, 1174
BseGI	GGATG	5 cut(s)	256, 503, 619, 950, 1102
BseLI	CCNNNNNNNGG	3 cut(s)	190, 634, 1146
BseMI	GCAATG	1 cut(s)	1005
BseMII	CTCAG	4 cut(s)	147, 287, 708, 788
BseNI	ACTGG	1 cut(s)	26
BseRI	GAGGAG	2 cut(s)	115, 1108
BseXI	GCAGC	7 cut(s)	69, 88, 98, 264, 449, 901, 907
BshFI	GGCC	2 cut(s)	25, 866
BsiHKAI	GWGCWC	1 cut(s)	274
BsiSI	CCGG	7 cut(s)	161, 191, 228, 665, 1007, 1016, 1122
BslFI	GGGAC	1 cut(s)	1053
BslI	CCNNNNNNNGG	3 cut(s)	190, 634, 1146
BsmAI	GTCTC	4 cut(s)	106, 294, 794, 1157
BsmBI	CGTCTC	2 cut(s)	106, 294
BsmFI	GGGAC	1 cut(s)	1053
BsmI	GAATGC	1 cut(s)	1049
BsnI	GGCC	2 cut(s)	25, 866
Bso31I	GGTCTC	1 cut(s)	1157
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	4 cut(s)	255, 804, 853, 858
Bsp1720I	GCTNAGC	1 cut(s)	273
Bsp19I	CCATGG	3 cut(s)	537, 814, 1174
BspACI	CCGC	6 cut(s)	358, 435, 465, 468, 992, 1064
BspANI	GGCC	2 cut(s)	25, 866
BspCNI	CTCAG	4 cut(s)	146, 286, 709, 789
BspEI	TCCGGA	1 cut(s)	160
BspHI	TCATGA	3 cut(s)	553, 748, 807
BspLI	GGNNCC	6 cut(s)	165, 182, 323, 1005, 1068, 1069
BspTNI	GGTCTC	1 cut(s)	1157
BsrDI	GCAATG	1 cut(s)	1005
BsrI	ACTGG	1 cut(s)	26
BssECI	CCNNGG	5 cut(s)	228, 245, 537, 814, 1174
BssMI	GATC	4 cut(s)	255, 804, 853, 858
BssNI	GRCGYC	3 cut(s)	303, 1044, 1101
BssT1I	CCWWGG	3 cut(s)	537, 814, 1174
Bst4CI	ACNGT	3 cut(s)	290, 940, 1030
Bst6I	CTCTTC	1 cut(s)	133
BstACI	GRCGYC	3 cut(s)	303, 1044, 1101
BstC8I	GCNNGC	4 cut(s)	48, 62, 347, 723
BstDEI	CTNAG	4 cut(s)	133, 273, 717, 797
BstDSI	CCRYGG	3 cut(s)	537, 814, 1174
BstF5I	GGATG	5 cut(s)	256, 503, 619, 950, 1102
BstKTI	GATC	4 cut(s)	258, 807, 856, 861
BstMAI	GTCTC	4 cut(s)	106, 294, 794, 1157
BstMBI	GATC	4 cut(s)	255, 804, 853, 858
BstMWI	GCNNNNNNNGC	2 cut(s)	649, 920
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	2 cut(s)	227, 1006
BstV1I	GCAGC	7 cut(s)	69, 88, 98, 264, 449, 901, 907
BsuRI	GGCC	2 cut(s)	25, 866
BtgI	CCRYGG	3 cut(s)	537, 814, 1174
BtgZI	GCGATG	1 cut(s)	383
BtsCI	GGATG	5 cut(s)	256, 503, 619, 950, 1102
BtsIMutI	CAGTG	2 cut(s)	19, 141
Cac8I	GCNNGC	4 cut(s)	48, 62, 347, 723
CaiI	CAGNNNCTG	2 cut(s)	21, 895
CciI	TCATGA	3 cut(s)	553, 748, 807
Cfr13I	GGNCC	3 cut(s)	776, 1013, 1067
CseI	GACGC	2 cut(s)	311, 1109
Csp6I	GTAC	1 cut(s)	286
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	4 cut(s)	133, 273, 717, 797
DpnI	GATC	4 cut(s)	257, 806, 855, 860
DpnII	GATC	4 cut(s)	255, 804, 853, 858
EaeI	YGGCCR	2 cut(s)	23, 864
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Ecl136II	GAGCTC	1 cut(s)	272
Eco130I	CCWWGG	3 cut(s)	537, 814, 1174
Eco24I	GRGCYC	1 cut(s)	274
Eco31I	GGTCTC	1 cut(s)	1157
Eco47I	GGWCC	3 cut(s)	776, 1013, 1067
Eco53kI	GAGCTC	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	1067
EcoT14I	CCWWGG	3 cut(s)	537, 814, 1174
EcoT38I	GRGCYC	1 cut(s)	274
ErhI	CCWWGG	3 cut(s)	537, 814, 1174
Esp3I	CGTCTC	2 cut(s)	106, 294
FaqI	GGGAC	1 cut(s)	1053
FauI	CCCGC	2 cut(s)	985, 1057
Fnu4HI	GCNGC	9 cut(s)	58, 77, 112, 278, 438, 465, 468, 890, 921
FokI	GGATG	5 cut(s)	263, 490, 606, 937, 1109
FriOI	GRGCYC	1 cut(s)	274
Fsp4HI	GCNGC	9 cut(s)	58, 77, 112, 278, 438, 465, 468, 890, 921
FspBI	CTAG	1 cut(s)	786
GluI	GCNGC	9 cut(s)	58, 77, 112, 278, 438, 465, 468, 890, 921
HaeIII	GGCC	2 cut(s)	25, 866
HapII	CCGG	7 cut(s)	161, 191, 228, 665, 1007, 1016, 1122
HgaI	GACGC	2 cut(s)	311, 1109
Hin1I	GRCGYC	3 cut(s)	303, 1044, 1101
HinfI	GANTC	2 cut(s)	238, 647
HpaII	CCGG	7 cut(s)	161, 191, 228, 665, 1007, 1016, 1122
HphI	GGTGA	6 cut(s)	247, 608, 617, 833, 1129, 1147
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	5 cut(s)	246, 299, 496, 718, 858
Hpy188III	TCNNGA	7 cut(s)	161, 259, 339, 554, 749, 808, 848
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	4 cut(s)	481, 490, 1046, 1049
HpyAV	CCTTC	3 cut(s)	102, 483, 1081
HpyCH4III	ACNGT	3 cut(s)	290, 940, 1030
HpyCH4IV	ACGT	2 cut(s)	1044, 1077
HpyCH4V	TGCA	5 cut(s)	57, 280, 670, 783, 998
HpyF10VI	GCNNNNNNNGC	2 cut(s)	649, 920
HpyF3I	CTNAG	4 cut(s)	133, 273, 717, 797
HpySE526I	ACGT	2 cut(s)	1044, 1077
Hsp92I	GRCGYC	3 cut(s)	303, 1044, 1101
KflI	GGGWCCC	1 cut(s)	1067
Kpn2I	TCCGGA	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	255, 804, 853, 858
LmnI	GCTCC	4 cut(s)	163, 193, 360, 1009
Lsp1109I	GCAGC	7 cut(s)	69, 88, 98, 264, 449, 901, 907
LweI	GCATC	1 cut(s)	679
MaeI	CTAG	1 cut(s)	786
MaeII	ACGT	2 cut(s)	1044, 1077
MalI	GATC	4 cut(s)	257, 806, 855, 860
MboI	GATC	4 cut(s)	255, 804, 853, 858
MboII	GAAGA	7 cut(s)	120, 161, 211, 274, 404, 863, 883
MfeI	CAATTG	1 cut(s)	576
MhlI	GDGCHC	1 cut(s)	274
MlsI	TGGCCA	2 cut(s)	25, 866
MluCI	AATT	4 cut(s)	198, 564, 576, 691
MluNI	TGGCCA	2 cut(s)	25, 866
MmeI	TCCRAC	2 cut(s)	277, 929
Mox20I	TGGCCA	2 cut(s)	25, 866
MroI	TCCGGA	1 cut(s)	160
MscI	TGGCCA	2 cut(s)	25, 866
MseI	TTAA	1 cut(s)	684
MslI	CAYNNNNRTG	1 cut(s)	866
Msp20I	TGGCCA	2 cut(s)	25, 866
MspA1I	CMGCKG	2 cut(s)	111, 277
MspI	CCGG	7 cut(s)	161, 191, 228, 665, 1007, 1016, 1122
MspR9I	CCNGG	2 cut(s)	229, 1008
MunI	CAATTG	1 cut(s)	576
Mva1269I	GAATGC	1 cut(s)	1049
MwoI	GCNNNNNNNGC	2 cut(s)	649, 920
NciI	CCSGG	2 cut(s)	229, 1008
NcoI	CCATGG	3 cut(s)	537, 814, 1174
NdeII	GATC	4 cut(s)	255, 804, 853, 858
NlaIV	GGNNCC	6 cut(s)	165, 182, 323, 1005, 1068, 1069
NspI	RCATGY	1 cut(s)	34
PagI	TCATGA	3 cut(s)	553, 748, 807
PcsI	WCGNNNNNNNCGW	3 cut(s)	482, 485, 1050
PctI	GAATGC	1 cut(s)	1049
PfeI	GAWTC	2 cut(s)	238, 647
PflMI	CCANNNNNTGG	1 cut(s)	1146
PfoI	TCCNGGA	1 cut(s)	1006
PkrI	GCNGC	9 cut(s)	59, 78, 113, 279, 439, 466, 469, 891, 922
PpuMI	RGGWCCY	1 cut(s)	1067
PshBI	ATTAAT	1 cut(s)	684
Psp124BI	GAGCTC	1 cut(s)	274
Psp5II	RGGWCCY	1 cut(s)	1067
PspN4I	GGNNCC	6 cut(s)	165, 182, 323, 1005, 1068, 1069
PspPI	GGNCC	3 cut(s)	776, 1013, 1067
PspPPI	RGGWCCY	1 cut(s)	1067
PstNI	CAGNNNCTG	2 cut(s)	21, 895
PvuII	CAGCTG	2 cut(s)	111, 277
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	866
SacI	GAGCTC	1 cut(s)	274
SaqAI	TTAA	1 cut(s)	684
SatI	GCNGC	9 cut(s)	58, 77, 112, 278, 438, 465, 468, 890, 921
Sau3AI	GATC	4 cut(s)	255, 804, 853, 858
Sau96I	GGNCC	3 cut(s)	776, 1013, 1067
ScrFI	CCNGG	2 cut(s)	229, 1008
SduI	GDGCHC	1 cut(s)	274
SfaNI	GCATC	1 cut(s)	679
SinI	GGWCC	3 cut(s)	776, 1013, 1067
SmiMI	CAYNNNNRTG	1 cut(s)	866
SpeI	ACTAGT	1 cut(s)	785
Sse9I	AATT	4 cut(s)	198, 564, 576, 691
SsiI	CCGC	6 cut(s)	358, 435, 465, 468, 992, 1064
SspMI	CTAG	1 cut(s)	786
SstI	GAGCTC	1 cut(s)	274
StyD4I	CCNGG	2 cut(s)	227, 1006
StyI	CCWWGG	3 cut(s)	537, 814, 1174
TaaI	ACNGT	3 cut(s)	290, 940, 1030
TaiI	ACGT	2 cut(s)	1047, 1080
TaqI	TCGA	2 cut(s)	210, 1053
TasI	AATT	4 cut(s)	198, 564, 576, 691
TauI	GCSGC	2 cut(s)	467, 470
TfiI	GAWTC	2 cut(s)	238, 647
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TscAI	CASTG	2 cut(s)	26, 141
TseI	GCWGC	7 cut(s)	57, 76, 111, 277, 437, 889, 920
TspDTI	ATGAA	4 cut(s)	725, 824, 884, 1024
TspRI	CASTG	2 cut(s)	26, 141
Van91I	CCANNNNNTGG	1 cut(s)	1146
VpaK11BI	GGWCC	3 cut(s)	776, 1013, 1067
VspI	ATTAAT	1 cut(s)	684
XapI	RAATTY	1 cut(s)	198
XceI	RCATGY	1 cut(s)	34
XcmI	CCANNNNNNNNNTGG	2 cut(s)	174, 874
XspI	CTAG	1 cut(s)	786
ZraI	GACGTC	1 cut(s)	1045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.