MD05G1307400.v1.1

WUSCHEL-related homeobox

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
43904750 .. 43908414
3665 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1307400.v1.1.491

Sequence Viewer

Length: 1233 bp
ATGGCTTCATCAAACAGACACTGGCCAAGCATGTTCAAGTCCAAGCCTGCTAATTGCAGCACCCACCACCAATGGCAGCATGAAATCAACCCTTCTCTTGTCTCAAACGGCTGCCACCGACCCTCCTCCTACTCCTCAGTTGGAGGGTGCGAAGAACGCAGTCCGGAGCCAAAACCTAGATGGAACCCGAAACCGGAGCAAATTCGCATACTCGAAGCAATCTTCAACTCCGGGATGGTGAATCCTCCGAGGGATGAGATCAGGAAGATTAGGGTTCAGCTGCAAGAGTACGGTCAAGTCGGAGACGCCAATGTGTTCTATTGGTTCCAGAACCGAAAGTCAAGAAGCAAGCACAAGCTCCGCAACCTCCACAACTCATCCAGGCAACAACAAACCCACCATCACCACACCCAGCTTCCTATCTCCACCCCCGTCTCTGCCGCCACCACTCTCAACATCATCAATGCCGCCGCCCCTTCGTCCTCGTCCTCATCCTCCTCCGAAAAGTCATCCCCCAAAGCACCAAACAACAAGGCCTTCTCCATGGGGTTCTCCACTCATGAGGCTTCAATCAACTCTCCAACTGCTTCTGTGAACCAAAGCACTAACTTTTTCCAGCCTCACCATCCTCACCACAACGAGGTCTTGCCCGAATCTCCGTTCTTTTTTCCGGTGCATCAGGCCAACATTAATCCTAATTTGACACAAGGGTTCTGCTTCCCTGAGCTGGCTAATGTGGTTCATGTTCCACATCATGAGCAAACCAATAATGATAATAACAACATTGGGCCTTGCACTAATATCCTGCTGAGTGAGATCATGAACCATGGAGCAATATCAAGGAAAGAATATCACCACCATCAGGAAGATCAGATCAAGGCCATGAAGAATGTGGATCATCAGCAACACCTCAATTACAATATCGATATCACCACAACTCCAACTACTGCTGCAGCTTCTTCTACTCCTACTGTCGCTGTTCCATTCCCCGTGATCCACAATAGTCGAGGCGGTGTTGGTGAAGCGGGTGCAATGGCTCCGGGAGGTGTGGCGAAATCAACGGTGTTCATAAACGACGTCGCATTCGAGGTGGGTGCGGGTCCCTTCAACGTGCGTGAGGCTTTCGGGGATGACGCCGTTCTCATTCACTCCTCTGGTCAGCCCGTTCTCACCAATGAGTGGGGTCTCACCCTCCACTCTCTCCACCACGGTGGTTTCTACTATCTGATATAG

Protein Analysis

411

Amino Acids

45.34

Weight (kDa)

7.48

Isoelectric Point (pI)

57.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 58 - 117 1.6e-11 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1080
AccB7I CCANNNNNTGG 1 cut(s) 1179
AccIII TCCGGA 1 cut(s) 163
AciI CCGC 7 cut(s) 361, 441, 468, 471, 1011, 1025, 1097
AclWI GGATC 2 cut(s) 903, 988
AcoI YGGCCR 1 cut(s) 23
AcsI RAATTY 1 cut(s) 201
AcyI GRCGYC 3 cut(s) 306, 1077, 1134
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 5 cut(s) 193, 640, 727, 862, 1179
AgsI TTSAA 4 cut(s) 37, 226, 570, 1108
AjnI CCWGG 1 cut(s) 380
AleI CACNNNNGTG 1 cut(s) 1209
AluBI AGCT 5 cut(s) 280, 358, 415, 727, 956
AluI AGCT 5 cut(s) 280, 358, 415, 727, 956
Alw26I GTCTC 4 cut(s) 106, 297, 439, 1190
AlwI GGATC 2 cut(s) 903, 988
AlwNI CAGNNNCTG 1 cut(s) 21
Aor13HI TCCGGA 1 cut(s) 163
AoxI GGCC 5 cut(s) 23, 534, 681, 788, 879
ApeKI GCWGC 6 cut(s) 57, 76, 111, 280, 950, 953
ApoI RAATTY 1 cut(s) 201
ArsI GACNNNNNNTTYG 2 cut(s) 1067, 1099
AseI ATTAAT 1 cut(s) 690
AspS9I GGNCC 2 cut(s) 788, 1100
AsuC2I CCSGG 2 cut(s) 232, 1041
AsuHPI GGTGA 9 cut(s) 250, 395, 614, 623, 845, 922, 1031, 1162, 1180
AvaII GGWCC 1 cut(s) 1100
BalI TGGCCA 1 cut(s) 25
BbvI GCAGC 6 cut(s) 69, 88, 98, 267, 937, 965
BccI CCATC 5 cut(s) 174, 229, 408, 633, 867
BceAI ACGGC 2 cut(s) 124, 1121
BcgI CGANNNNNNTGC 2 cut(s) 1076, 1110
BciT130I CCWGG 1 cut(s) 382
BcnI CCSGG 2 cut(s) 232, 1041
BcoDI GTCTC 4 cut(s) 106, 297, 439, 1190
BfaI CTAG 1 cut(s) 177
BfmI CTRYAG 1 cut(s) 951
BisI GCNGC 9 cut(s) 58, 77, 112, 281, 441, 468, 471, 951, 954
BlsI GCNGC 9 cut(s) 59, 78, 113, 282, 442, 469, 472, 952, 955
Bme1390I CCNGG 3 cut(s) 232, 382, 1041
Bme18I GGWCC 1 cut(s) 1100
BmgT120I GGNCC 2 cut(s) 788, 1100
BmiI GGNNCC 6 cut(s) 168, 185, 326, 1038, 1101, 1102
BmrFI CCNGG 3 cut(s) 232, 382, 1041
BmsI GCATC 1 cut(s) 685
Bpu10I CCTNAGC 1 cut(s) 723
BpuMI CCSGG 2 cut(s) 232, 1041
Bsa29I ATCGAT 1 cut(s) 924
BsaHI GRCGYC 3 cut(s) 306, 1077, 1134
BsaI GGTCTC 1 cut(s) 1190
BsaJI CCNNGG 4 cut(s) 248, 543, 826, 1207
BsaWI WCCGGW 3 cut(s) 163, 193, 670
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 922, 952
Bsc4I CCNNNNNNNGG 5 cut(s) 193, 640, 727, 862, 1179
Bse1I ACTGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 1038
BseAI TCCGGA 1 cut(s) 163
BseBI CCWGG 1 cut(s) 382
BseCI ATCGAT 1 cut(s) 924
BseDI CCNNGG 4 cut(s) 248, 543, 826, 1207
BseGI GGATG 7 cut(s) 240, 259, 377, 491, 509, 625, 1135
BseLI CCNNNNNNNGG 5 cut(s) 193, 640, 727, 862, 1179
BseMI GCAATG 1 cut(s) 1038
BseMII CTCAG 3 cut(s) 150, 714, 800
BseNI ACTGG 1 cut(s) 26
BseRI GAGGAG 4 cut(s) 115, 124, 487, 1141
BseXI GCAGC 6 cut(s) 69, 88, 98, 267, 937, 965
BseYI CCCAGC 1 cut(s) 411
BshFI GGCC 5 cut(s) 25, 536, 683, 790, 881
BshVI ATCGAT 1 cut(s) 924
BsiSI CCGG 5 cut(s) 164, 194, 231, 671, 1040
BslFI GGGAC 1 cut(s) 1086
BslI CCNNNNNNNGG 5 cut(s) 193, 640, 727, 862, 1179
BsmAI GTCTC 4 cut(s) 106, 297, 439, 1190
BsmBI CGTCTC 2 cut(s) 297, 439
BsmFI GGGAC 1 cut(s) 1086
BsmI GAATGC 1 cut(s) 1082
BsnI GGCC 5 cut(s) 25, 536, 683, 790, 881
Bso31I GGTCTC 1 cut(s) 1190
Bsp13I TCCGGA 1 cut(s) 163
Bsp143I GATC 6 cut(s) 258, 816, 868, 873, 895, 993
Bsp19I CCATGG 2 cut(s) 543, 826
BspACI CCGC 7 cut(s) 361, 441, 468, 471, 1011, 1025, 1097
BspANI GGCC 5 cut(s) 25, 536, 683, 790, 881
BspCNI CTCAG 3 cut(s) 149, 715, 801
BspDI ATCGAT 1 cut(s) 924
BspEI TCCGGA 1 cut(s) 163
BspHI TCATGA 3 cut(s) 559, 754, 819
BspLI GGNNCC 6 cut(s) 168, 185, 326, 1038, 1101, 1102
BspMAI CTGCAG 1 cut(s) 955
BspPI GGATC 2 cut(s) 903, 988
BspTNI GGTCTC 1 cut(s) 1190
BsrDI GCAATG 1 cut(s) 1038
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 4 cut(s) 248, 543, 826, 1207
BssMI GATC 6 cut(s) 258, 816, 868, 873, 895, 993
BssNI GRCGYC 3 cut(s) 306, 1077, 1134
BssT1I CCWWGG 2 cut(s) 543, 826
Bst2UI CCWGG 1 cut(s) 382
Bst4CI ACNGT 4 cut(s) 293, 973, 1063, 1211
BstACI GRCGYC 3 cut(s) 306, 1077, 1134
BstC8I GCNNGC 3 cut(s) 48, 350, 729
BstDEI CTNAG 3 cut(s) 136, 723, 809
BstDSI CCRYGG 3 cut(s) 543, 826, 1207
BstF5I GGATG 7 cut(s) 240, 259, 377, 491, 509, 625, 1135
BstKTI GATC 6 cut(s) 261, 819, 871, 876, 898, 996
BstMAI GTCTC 4 cut(s) 106, 297, 439, 1190
BstMBI GATC 6 cut(s) 258, 816, 868, 873, 895, 993
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstNI CCWGG 1 cut(s) 382
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 3 cut(s) 230, 380, 1039
BstSFI CTRYAG 1 cut(s) 951
BstV1I GCAGC 6 cut(s) 69, 88, 98, 267, 937, 965
BstXI CCANNNNNNTGG 1 cut(s) 1211
Bsu15I ATCGAT 1 cut(s) 924
BsuRI GGCC 5 cut(s) 25, 536, 683, 790, 881
BsuTUI ATCGAT 1 cut(s) 924
BtgI CCRYGG 3 cut(s) 543, 826, 1207
BtsCI GGATG 7 cut(s) 240, 259, 377, 491, 509, 625, 1135
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 3 cut(s) 48, 350, 729
CaiI CAGNNNCTG 1 cut(s) 21
CciI TCATGA 3 cut(s) 559, 754, 819
Cfr13I GGNCC 2 cut(s) 788, 1100
ClaI ATCGAT 1 cut(s) 924
CseI GACGC 2 cut(s) 314, 1142
Csp6I GTAC 1 cut(s) 289
CviAII CATG 9 cut(s) 31, 80, 544, 560, 743, 755, 820, 827, 883
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 3 cut(s) 136, 723, 809
DpnI GATC 6 cut(s) 260, 818, 870, 875, 897, 995
DpnII GATC 6 cut(s) 258, 816, 868, 873, 895, 993
EaeI YGGCCR 1 cut(s) 23
Eco130I CCWWGG 2 cut(s) 543, 826
Eco147I AGGCCT 1 cut(s) 536
Eco31I GGTCTC 1 cut(s) 1190
Eco32I GATATC 1 cut(s) 928
Eco47I GGWCC 1 cut(s) 1100
EcoO109I RGGNCCY 1 cut(s) 1100
EcoRII CCWGG 1 cut(s) 380
EcoRV GATATC 1 cut(s) 928
EcoT14I CCWWGG 2 cut(s) 543, 826
ErhI CCWWGG 2 cut(s) 543, 826
Esp3I CGTCTC 2 cut(s) 297, 439
FaeI CATG 9 cut(s) 34, 83, 547, 563, 746, 758, 823, 830, 886
FaqI GGGAC 1 cut(s) 1086
FatI CATG 9 cut(s) 30, 79, 543, 559, 742, 754, 819, 826, 882
FauI CCCGC 2 cut(s) 1018, 1090
Fnu4HI GCNGC 9 cut(s) 58, 77, 112, 281, 441, 468, 471, 951, 954
FokI GGATG 7 cut(s) 247, 266, 364, 478, 496, 612, 1142
Fsp4HI GCNGC 9 cut(s) 58, 77, 112, 281, 441, 468, 471, 951, 954
FspBI CTAG 1 cut(s) 177
GluI GCNGC 9 cut(s) 58, 77, 112, 281, 441, 468, 471, 951, 954
GsaI CCCAGC 1 cut(s) 415
HaeIII GGCC 5 cut(s) 25, 536, 683, 790, 881
HapII CCGG 5 cut(s) 164, 194, 231, 671, 1040
HgaI GACGC 2 cut(s) 314, 1142
Hin1I GRCGYC 3 cut(s) 306, 1077, 1134
Hin1II CATG 9 cut(s) 34, 83, 547, 563, 746, 758, 823, 830, 886
HinfI GANTC 2 cut(s) 241, 653
HpaII CCGG 5 cut(s) 164, 194, 231, 671, 1040
HphI GGTGA 9 cut(s) 250, 395, 614, 623, 845, 922, 1031, 1162, 1180
Hpy166II GTNNAC 1 cut(s) 595
Hpy188I TCNGA 5 cut(s) 249, 302, 502, 873, 1227
Hpy188III TCNNGA 8 cut(s) 164, 262, 328, 342, 560, 755, 820, 863
Hpy8I GTNNAC 1 cut(s) 595
Hpy99I CGWCG 2 cut(s) 1079, 1082
HpyAV CCTTC 4 cut(s) 102, 486, 547, 1114
HpyCH4III ACNGT 4 cut(s) 293, 973, 1063, 1211
HpyCH4IV ACGT 2 cut(s) 1077, 1110
HpyCH4V TGCA 6 cut(s) 57, 283, 676, 795, 953, 1031
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpyF3I CTNAG 3 cut(s) 136, 723, 809
HpySE526I ACGT 2 cut(s) 1077, 1110
Hsp92I GRCGYC 3 cut(s) 306, 1077, 1134
Hsp92II CATG 9 cut(s) 34, 83, 547, 563, 746, 758, 823, 830, 886
KflI GGGWCCC 1 cut(s) 1100
Kpn2I TCCGGA 1 cut(s) 163
Kzo9I GATC 6 cut(s) 258, 816, 868, 873, 895, 993
LmnI GCTCC 5 cut(s) 166, 196, 363, 830, 1042
Lsp1109I GCAGC 6 cut(s) 69, 88, 98, 267, 937, 965
LweI GCATC 1 cut(s) 685
MaeI CTAG 1 cut(s) 177
MaeII ACGT 2 cut(s) 1077, 1110
MalI GATC 6 cut(s) 260, 818, 870, 875, 897, 995
MboI GATC 6 cut(s) 258, 816, 868, 873, 895, 993
MboII GAAGA 6 cut(s) 164, 214, 277, 878, 898, 951
MlsI TGGCCA 1 cut(s) 25
MluCI AATT 4 cut(s) 52, 201, 697, 913
MluNI TGGCCA 1 cut(s) 25
MmeI TCCRAC 4 cut(s) 121, 280, 605, 965
Mox20I TGGCCA 1 cut(s) 25
MroI TCCGGA 1 cut(s) 163
MscI TGGCCA 1 cut(s) 25
MseI TTAA 1 cut(s) 690
MslI CAYNNNNRTG 1 cut(s) 1209
Msp20I TGGCCA 1 cut(s) 25
MspA1I CMGCKG 1 cut(s) 280
MspI CCGG 5 cut(s) 164, 194, 231, 671, 1040
MspR9I CCNGG 3 cut(s) 232, 382, 1041
Mva1269I GAATGC 1 cut(s) 1082
MvaI CCWGG 1 cut(s) 382
MwoI GCNNNNNNNGC 1 cut(s) 156
NciI CCSGG 2 cut(s) 232, 1041
NcoI CCATGG 2 cut(s) 543, 826
NdeII GATC 6 cut(s) 258, 816, 868, 873, 895, 993
NlaIII CATG 9 cut(s) 34, 83, 547, 563, 746, 758, 823, 830, 886
NlaIV GGNNCC 6 cut(s) 168, 185, 326, 1038, 1101, 1102
NspI RCATGY 1 cut(s) 34
OliI CACNNNNGTG 1 cut(s) 1209
PagI TCATGA 3 cut(s) 559, 754, 819
PceI AGGCCT 1 cut(s) 536
PcsI WCGNNNNNNNCGW 1 cut(s) 1083
PctI GAATGC 1 cut(s) 1082
PfeI GAWTC 2 cut(s) 241, 653
PflMI CCANNNNNTGG 1 cut(s) 1179
PfoI TCCNGGA 2 cut(s) 230, 1039
PkrI GCNGC 9 cut(s) 59, 78, 113, 282, 442, 469, 472, 952, 955
PpuMI RGGWCCY 1 cut(s) 1100
PshBI ATTAAT 1 cut(s) 690
Psp5II RGGWCCY 1 cut(s) 1100
Psp6I CCWGG 1 cut(s) 380
PspFI CCCAGC 1 cut(s) 411
PspGI CCWGG 1 cut(s) 380
PspN4I GGNNCC 6 cut(s) 168, 185, 326, 1038, 1101, 1102
PspPI GGNCC 2 cut(s) 788, 1100
PspPPI RGGWCCY 1 cut(s) 1100
PstI CTGCAG 1 cut(s) 955
PstNI CAGNNNCTG 1 cut(s) 21
PvuII CAGCTG 1 cut(s) 280
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 1209
SaqAI TTAA 1 cut(s) 690
SatI GCNGC 9 cut(s) 58, 77, 112, 281, 441, 468, 471, 951, 954
Sau3AI GATC 6 cut(s) 258, 816, 868, 873, 895, 993
Sau96I GGNCC 2 cut(s) 788, 1100
ScrFI CCNGG 3 cut(s) 232, 382, 1041
SfaNI GCATC 1 cut(s) 685
SfcI CTRYAG 1 cut(s) 951
SinI GGWCC 1 cut(s) 1100
SmiMI CAYNNNNRTG 1 cut(s) 1209
Sse9I AATT 4 cut(s) 52, 201, 697, 913
SseBI AGGCCT 1 cut(s) 536
SsiI CCGC 7 cut(s) 361, 441, 468, 471, 1011, 1025, 1097
SspMI CTAG 1 cut(s) 177
StuI AGGCCT 1 cut(s) 536
StyD4I CCNGG 3 cut(s) 230, 380, 1039
StyI CCWWGG 2 cut(s) 543, 826
TaaI ACNGT 4 cut(s) 293, 973, 1063, 1211
TaiI ACGT 2 cut(s) 1080, 1113
TaqI TCGA 4 cut(s) 213, 924, 1006, 1086
TasI AATT 4 cut(s) 52, 201, 697, 913
TauI GCSGC 3 cut(s) 443, 470, 473
TfiI GAWTC 2 cut(s) 241, 653
Tru1I TTAA 1 cut(s) 690
Tru9I TTAA 1 cut(s) 690
TscAI CASTG 1 cut(s) 26
TseI GCWGC 6 cut(s) 57, 76, 111, 280, 950, 953
TspDTI ATGAA 5 cut(s) 96, 731, 836, 899, 1057
TspGWI ACGGA 1 cut(s) 648
TspRI CASTG 1 cut(s) 26
Van91I CCANNNNNTGG 1 cut(s) 1179
VpaK11BI GGWCC 1 cut(s) 1100
VspI ATTAAT 1 cut(s) 690
XapI RAATTY 1 cut(s) 201
XceI RCATGY 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 2 cut(s) 177, 889
XspI CTAG 1 cut(s) 177
ZraI GACGTC 1 cut(s) 1078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.