AT2G34360

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
14507294 .. 14510342
3049 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34360.2

Sequence Viewer

Length: 1443 bp
ATGAGGGAGGAGAGAGAGGATATGTTGTCATGGCCTCTGATCGGAGAGAAAGAGAAGAGAAGTAGATTTGTAAAGGAGGAAGTGGAGAAGCAGCTACTGTTGTCTGGACCACTAATCGCAGTGAGTCTTCTTCAGTTTTGTCTGCAAATAATCTCAGTCATGTTCGTCGGCCATCTTGGCTCTCTTCCTCTATCCGCCGCCTCTATTGCCACCTCCTTCGCCTCCGTCACCGGCTTCACCTTCCTCATGGGAACAGCAAGTGCGATGGACACAGTTTGTGGTCAATCGTACGGAGCAAAAATGTACGGTATGTTAGGCATACAGATGCAAAGAGCAATGCTTGTTCTTACTCTTTTATCTGTTCCTCTCTCCATCGTTTGGGCCAACACAGAGCACTTCCTGGTCTTCTTCGGCCAAGACAAGTCCATTGCACACCTCTCTGGCTCCTACGCCAGATTCATGATCCCTAGCATCTTCGCCTACGGTCTTCTTCAATGTCTCAACAGGTTTTTGCAGGCGCAGAACAATGTAATTCCTGTGGTTATCTGTTCTGGAGTCACCACTTCTCTTCACGTGATCATCTGTTGGGTCTTGGTGTTGAAATCTGGTTTAGGGTTTAGAGGAGCTGCTGTCGCTAATGCGATCTCGTATTGGCTCAATGTCATTCTCTTGTCGTGTTACGTCAAGTTTTCGCCTTCTTGCTCCCTGACCTGGACCGGTTTCTCTAAGGAAGCTCGGCGCGATATCATCCCTTTTATGAAACTAGTTATTCCTTCTGCATTTATGGTTTGCAGCTTAGAGATGTGGTCATTTGAGCTTTTGGTTCTCTCGTCAGGACTTCTTCCGAACCCGGTTCTAGAAACTTCTTGTCCTCGAACCGTCTGGATGATCCCGTTTGGCCTTAGTGGCGCCGCTAGCACAAGGGTGTCAAATGAGTTAGGATCAGGGAATCCGAAAGGGGCTAAGCTTGCGGTTCGCGTGGTCTTGAGCTTTTCCATCGTAGAGAGTATACTAGTTGGAACGGTCTTGATACTTATAAGGAAGATCTGGGGATTCGCATACAGTAGTGACCCGGAAGTAGTCAGCCATGTAGCCTCGATGTTGCCGATTCTTGCCTTAGGTCATTCCCTGGACAGCTTCCAAACCGTTCTTTCAGGGGTTGCGAGAGGATGTGGATGGCAGAAGATAGGAGCATTTGTGAATCTTGGATCATATTATCTTGTCGGAGTTCCGTTCGGTTTATTACTTGGTTTTCACTTTCACGTCGGTGGTCGGGGGCTTTGGTTGGGAATTATATGTGCACTCATCGTTCAAGGTGTATGTCTTTCCCTCATCACCTTTTTTACAAATTGGGATGAAGAGGTCAAGAAAGCTACCAGCCGAGCTAAGTCTTCTTCAGAAGTAAAGGAATTTGCAGTAGACAACGGGTCAATTCTTGTTTGA

Protein Analysis

480

Amino Acids

52.19

Weight (kDa)

8.78

Isoelectric Point (pI)

29.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 37 - 197 2.1e-40 MatE
MatE PF01554 265 - 372 1e-18 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1037
AccB1I GGYRCC 1 cut(s) 908
AccB7I CCANNNNNTGG 1 cut(s) 378
AccI GTMKAC 2 cut(s) 1009, 1419
AccII CGCG 2 cut(s) 741, 978
AciI CCGC 4 cut(s) 195, 198, 912, 971
AclWI GGATC 4 cut(s) 457, 883, 949, 1216
AcoI YGGCCR 2 cut(s) 169, 412
AcsI RAATTY 1 cut(s) 1409
AcuI CTGAAG 2 cut(s) 116, 1380
AcvI CACGTG 1 cut(s) 574
AcyI GRCGYC 1 cut(s) 909
AfaI GTAC 2 cut(s) 290, 305
AfiI CCNNNNNNNGG 3 cut(s) 41, 378, 711
AgeI ACCGGT 1 cut(s) 716
AgsI TTSAA 3 cut(s) 494, 601, 1313
AhdI GACNNNNNGTC 1 cut(s) 1426
AhlI ACTAGT 2 cut(s) 763, 1012
AjiI CACGTC 1 cut(s) 1264
AjnI CCWGG 3 cut(s) 399, 710, 1128
AleI CACNNNNGTG 2 cut(s) 923, 1266
Alw21I GWGCWC 2 cut(s) 396, 1303
Alw26I GTCTC 1 cut(s) 503
Alw44I GTGCAC 1 cut(s) 1299
AlwI GGATC 4 cut(s) 457, 883, 949, 1216
AlwNI CAGNNNCTG 1 cut(s) 97
AoxI GGCC 5 cut(s) 32, 169, 381, 412, 898
ApaLI GTGCAC 1 cut(s) 1299
ApeKI GCWGC 3 cut(s) 91, 626, 792
ApoI RAATTY 1 cut(s) 1409
AsiGI ACCGGT 1 cut(s) 716
AspLEI GCGC 3 cut(s) 520, 741, 911
AspS9I GGNCC 3 cut(s) 107, 381, 714
AsuC2I CCSGG 2 cut(s) 851, 1073
AsuHPI GGTGA 4 cut(s) 220, 229, 550, 1327
AsuNHI GCTAGC 1 cut(s) 914
AvaII GGWCC 2 cut(s) 107, 714
AxyI CCTNAGG 1 cut(s) 1117
BaeGI GKGCMC 1 cut(s) 1303
BanI GGYRCC 1 cut(s) 908
BbrPI CACGTG 1 cut(s) 574
BbsI GAAGAC 4 cut(s) 119, 397, 479, 1383
Bbv12I GWGCWC 2 cut(s) 396, 1303
BbvI GCAGC 3 cut(s) 103, 613, 804
BccI CCATC 5 cut(s) 180, 259, 380, 1004, 1170
BciT130I CCWGG 3 cut(s) 401, 712, 1130
BclI TGATCA 1 cut(s) 576
BcnI CCSGG 2 cut(s) 851, 1073
BcoDI GTCTC 1 cut(s) 503
BcuI ACTAGT 2 cut(s) 763, 1012
BfaI CTAG 5 cut(s) 468, 764, 857, 915, 1013
BfoI RGCGCY 1 cut(s) 912
BglI GCCNNNNNGGC 2 cut(s) 177, 906
BglII AGATCT 1 cut(s) 1044
BisI GCNGC 5 cut(s) 92, 198, 627, 793, 912
BlpI GCTNAGC 1 cut(s) 963
BlsI GCNGC 5 cut(s) 93, 199, 628, 794, 913
Bme1390I CCNGG 5 cut(s) 401, 712, 851, 1073, 1130
Bme18I GGWCC 2 cut(s) 107, 714
BmeRI GACNNNNNGTC 1 cut(s) 1426
BmgBI CACGTC 1 cut(s) 1264
BmgT120I GGNCC 3 cut(s) 107, 381, 714
BmiI GGNNCC 2 cut(s) 445, 910
BmrFI CCNGG 5 cut(s) 401, 712, 851, 1073, 1130
BmsI GCATC 2 cut(s) 315, 480
BmtI GCTAGC 1 cut(s) 918
BpiI GAAGAC 4 cut(s) 119, 397, 479, 1383
BpmI CTGGAG 1 cut(s) 573
Bpu1102I GCTNAGC 1 cut(s) 963
BpuEI CTTGAG 1 cut(s) 1006
BpuMI CCSGG 2 cut(s) 851, 1073
BsaAI YACGTR 1 cut(s) 574
BsaHI GRCGYC 1 cut(s) 909
BsaJI CCNNGG 1 cut(s) 1128
BsaWI WCCGGW 1 cut(s) 716
BsaXI ACNNNNNCTCC 4 cut(s) 615, 645, 1182, 1212
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 378, 711
Bse118I RCCGGY 2 cut(s) 230, 716
Bse21I CCTNAGG 1 cut(s) 1117
Bse3DI GCAATG 2 cut(s) 342, 426
BseBI CCWGG 3 cut(s) 401, 712, 1130
BseDI CCNNGG 1 cut(s) 1128
BseGI GGATG 5 cut(s) 747, 891, 1175, 1181, 1360
BseLI CCNNNNNNNGG 3 cut(s) 41, 378, 711
BseMI GCAATG 2 cut(s) 342, 426
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 2 cut(s) 23, 636
BseSI GKGCMC 1 cut(s) 1303
BseXI GCAGC 3 cut(s) 103, 613, 804
Bsh1236I CGCG 2 cut(s) 741, 978
BshFI GGCC 5 cut(s) 34, 171, 383, 414, 900
BshNI GGYRCC 1 cut(s) 908
BshTI ACCGGT 1 cut(s) 716
BsiHKAI GWGCWC 2 cut(s) 396, 1303
BsiSI CCGG 4 cut(s) 231, 717, 851, 1073
BsiWI CGTACG 1 cut(s) 288
BslI CCNNNNNNNGG 3 cut(s) 41, 378, 711
BsmAI GTCTC 1 cut(s) 503
BsnI GGCC 5 cut(s) 34, 171, 383, 414, 900
Bsp1286I GDGCHC 2 cut(s) 396, 1303
Bsp143I GATC 8 cut(s) 39, 462, 576, 642, 888, 941, 1044, 1208
Bsp1720I GCTNAGC 1 cut(s) 963
BspACI CCGC 4 cut(s) 195, 198, 912, 971
BspANI GGCC 5 cut(s) 34, 171, 383, 414, 900
BspCNI CTCAG 1 cut(s) 167
BspFNI CGCG 2 cut(s) 741, 978
BspHI TCATGA 1 cut(s) 459
BspLI GGNNCC 2 cut(s) 445, 910
BspOI GCTAGC 1 cut(s) 918
BspPI GGATC 4 cut(s) 457, 883, 949, 1216
BspT107I GGYRCC 1 cut(s) 908
BsrDI GCAATG 2 cut(s) 342, 426
BsrFI RCCGGY 2 cut(s) 230, 716
BssAI RCCGGY 2 cut(s) 230, 716
BssECI CCNNGG 1 cut(s) 1128
BssMI GATC 8 cut(s) 39, 462, 576, 642, 888, 941, 1044, 1208
BssNAI GTATAC 1 cut(s) 1010
BssNI GRCGYC 1 cut(s) 909
Bst1107I GTATAC 1 cut(s) 1010
Bst2UI CCWGG 3 cut(s) 401, 712, 1130
Bst4CI ACNGT 8 cut(s) 99, 274, 308, 485, 880, 1024, 1064, 1147
Bst6I CTCTTC 4 cut(s) 50, 189, 573, 1353
BstACI GRCGYC 1 cut(s) 909
BstBAI YACGTR 1 cut(s) 574
BstC8I GCNNGC 3 cut(s) 516, 916, 969
BstDEI CTNAG 7 cut(s) 154, 726, 796, 902, 963, 1117, 1386
BstF5I GGATG 5 cut(s) 747, 891, 1175, 1181, 1360
BstFNI CGCG 2 cut(s) 741, 978
BstH2I RGCGCY 1 cut(s) 912
BstHHI GCGC 3 cut(s) 520, 741, 911
BstKTI GATC 8 cut(s) 42, 465, 579, 645, 891, 944, 1047, 1211
BstMAI GTCTC 1 cut(s) 503
BstMBI GATC 8 cut(s) 39, 462, 576, 642, 888, 941, 1044, 1208
BstMWI GCNNNNNNNGC 6 cut(s) 177, 206, 632, 906, 915, 968
BstNI CCWGG 3 cut(s) 401, 712, 1130
BstSCI CCNGG 5 cut(s) 399, 710, 849, 1071, 1128
BstSLI GKGCMC 1 cut(s) 1303
BstUI CGCG 2 cut(s) 741, 978
BstV1I GCAGC 3 cut(s) 103, 613, 804
BstV2I GAAGAC 4 cut(s) 119, 397, 479, 1383
BstX2I RGATCY 1 cut(s) 1044
BstYI RGATCY 1 cut(s) 1044
BstZ17I GTATAC 1 cut(s) 1010
Bsu36I CCTNAGG 1 cut(s) 1117
BsuRI GGCC 5 cut(s) 34, 171, 383, 414, 900
BtgZI GCGATG 1 cut(s) 278
BtrI CACGTC 1 cut(s) 1264
BtsCI GGATG 5 cut(s) 747, 891, 1175, 1181, 1360
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 3 cut(s) 516, 916, 969
CaiI CAGNNNCTG 1 cut(s) 97
CciI TCATGA 1 cut(s) 459
CfoI GCGC 3 cut(s) 520, 741, 911
Cfr10I RCCGGY 2 cut(s) 230, 716
Cfr13I GGNCC 3 cut(s) 107, 381, 714
Csp6I GTAC 2 cut(s) 289, 304
CspAI ACCGGT 1 cut(s) 716
CviAII CATG 5 cut(s) 30, 160, 247, 460, 1088
CviQI GTAC 2 cut(s) 289, 304
DdeI CTNAG 7 cut(s) 154, 726, 796, 902, 963, 1117, 1386
DinI GGCGCC 1 cut(s) 910
DpnI GATC 8 cut(s) 41, 464, 578, 644, 890, 943, 1046, 1210
DpnII GATC 8 cut(s) 39, 462, 576, 642, 888, 941, 1044, 1208
DriI GACNNNNNGTC 1 cut(s) 1426
EaeI YGGCCR 2 cut(s) 169, 412
Eam1104I CTCTTC 4 cut(s) 50, 189, 573, 1353
Eam1105I GACNNNNNGTC 1 cut(s) 1426
EarI CTCTTC 4 cut(s) 50, 189, 573, 1353
EciI GGCGGA 1 cut(s) 184
Eco32I GATATC 1 cut(s) 745
Eco47I GGWCC 2 cut(s) 107, 714
Eco57I CTGAAG 2 cut(s) 116, 1380
Eco72I CACGTG 1 cut(s) 574
Eco81I CCTNAGG 1 cut(s) 1117
EcoRII CCWGG 3 cut(s) 399, 710, 1128
EcoRV GATATC 1 cut(s) 745
EgeI GGCGCC 1 cut(s) 910
EheI GGCGCC 1 cut(s) 910
FaeI CATG 5 cut(s) 33, 163, 250, 463, 1091
FatI CATG 5 cut(s) 29, 159, 246, 459, 1087
FbaI TGATCA 1 cut(s) 576
FblI GTMKAC 2 cut(s) 1009, 1419
Fnu4HI GCNGC 5 cut(s) 92, 198, 627, 793, 912
FokI GGATG 5 cut(s) 734, 898, 1182, 1188, 1367
Fsp4HI GCNGC 5 cut(s) 92, 198, 627, 793, 912
FspBI CTAG 5 cut(s) 468, 764, 857, 915, 1013
GlaI GCGC 3 cut(s) 519, 740, 910
GluI GCNGC 5 cut(s) 92, 198, 627, 793, 912
GsuI CTGGAG 1 cut(s) 573
HaeII RGCGCY 1 cut(s) 912
HaeIII GGCC 5 cut(s) 34, 171, 383, 414, 900
HapII CCGG 4 cut(s) 231, 717, 851, 1073
HhaI GCGC 3 cut(s) 520, 741, 911
Hin1I GRCGYC 1 cut(s) 909
Hin1II CATG 5 cut(s) 33, 163, 250, 463, 1091
Hin6I GCGC 3 cut(s) 518, 739, 909
HinP1I GCGC 3 cut(s) 518, 739, 909
HindIII AAGCTT 1 cut(s) 965
HinfI GANTC 7 cut(s) 124, 456, 555, 949, 1053, 1108, 1201
HpaII CCGG 4 cut(s) 231, 717, 851, 1073
HphI GGTGA 4 cut(s) 220, 229, 550, 1327
Hpy166II GTNNAC 3 cut(s) 1010, 1301, 1420
Hpy188I TCNGA 6 cut(s) 39, 44, 846, 954, 1226, 1399
Hpy188III TCNNGA 9 cut(s) 105, 460, 552, 834, 857, 883, 985, 1027, 1366
Hpy8I GTNNAC 3 cut(s) 1010, 1301, 1420
Hpy99I CGWCG 2 cut(s) 170, 1268
HpyAV CCTTC 4 cut(s) 226, 250, 705, 783
HpyCH4III ACNGT 8 cut(s) 99, 274, 308, 485, 880, 1024, 1064, 1147
HpyCH4IV ACGT 3 cut(s) 573, 681, 1263
HpyCH4V TGCA 8 cut(s) 145, 328, 431, 514, 779, 792, 1301, 1415
HpyF10VI GCNNNNNNNGC 6 cut(s) 177, 206, 632, 906, 915, 968
HpyF3I CTNAG 7 cut(s) 154, 726, 796, 902, 963, 1117, 1386
HpySE526I ACGT 3 cut(s) 573, 681, 1263
Hsp92I GRCGYC 1 cut(s) 909
Hsp92II CATG 5 cut(s) 33, 163, 250, 463, 1091
HspAI GCGC 3 cut(s) 518, 739, 909
KasI GGCGCC 1 cut(s) 908
Ksp22I TGATCA 1 cut(s) 576
Kzo9I GATC 8 cut(s) 39, 462, 576, 642, 888, 941, 1044, 1208
LmnI GCTCC 5 cut(s) 293, 449, 623, 707, 1190
Lsp1109I GCAGC 3 cut(s) 103, 613, 804
LweI GCATC 2 cut(s) 315, 480
MaeI CTAG 5 cut(s) 468, 764, 857, 915, 1013
MaeII ACGT 3 cut(s) 573, 681, 1263
MaeIII GTNAC 4 cut(s) 226, 556, 677, 1067
MalI GATC 8 cut(s) 41, 464, 578, 644, 890, 943, 1046, 1210
MboI GATC 8 cut(s) 39, 462, 576, 642, 888, 941, 1044, 1208
MflI RGATCY 1 cut(s) 1044
MhlI GDGCHC 2 cut(s) 396, 1303
MluCI AATT 5 cut(s) 531, 1290, 1348, 1409, 1431
Mly113I GGCGCC 1 cut(s) 909
MlyI GAGTC 2 cut(s) 133, 564
MmeI TCCRAC 2 cut(s) 997, 1204
MslI CAYNNNNRTG 3 cut(s) 323, 923, 1266
MspI CCGG 4 cut(s) 231, 717, 851, 1073
MspR9I CCNGG 5 cut(s) 401, 712, 851, 1073, 1130
MvaI CCWGG 3 cut(s) 401, 712, 1130
MvnI CGCG 2 cut(s) 741, 978
MwoI GCNNNNNNNGC 6 cut(s) 177, 206, 632, 906, 915, 968
NarI GGCGCC 1 cut(s) 909
NciI CCSGG 2 cut(s) 851, 1073
NdeII GATC 8 cut(s) 39, 462, 576, 642, 888, 941, 1044, 1208
NheI GCTAGC 1 cut(s) 914
NlaIII CATG 5 cut(s) 33, 163, 250, 463, 1091
NlaIV GGNNCC 2 cut(s) 445, 910
NmeAIII GCCGAG 2 cut(s) 715, 1406
NmuCI GTSAC 3 cut(s) 226, 556, 1067
OliI CACNNNNGTG 2 cut(s) 923, 1266
PagI TCATGA 1 cut(s) 459
PcsI WCGNNNNNNNCGW 1 cut(s) 1103
PfeI GAWTC 5 cut(s) 456, 949, 1053, 1108, 1201
Pfl23II CGTACG 1 cut(s) 288
PflMI CCANNNNNTGG 1 cut(s) 378
PinAI ACCGGT 1 cut(s) 716
PkrI GCNGC 5 cut(s) 93, 199, 628, 794, 913
PleI GAGTC 2 cut(s) 132, 563
PluTI GGCGCC 1 cut(s) 912
PmaCI CACGTG 1 cut(s) 574
PmlI CACGTG 1 cut(s) 574
PpsI GAGTC 2 cut(s) 132, 563
Ppu21I YACGTR 1 cut(s) 574
PsiI TTATAA 1 cut(s) 1037
Psp6I CCWGG 3 cut(s) 399, 710, 1128
PspCI CACGTG 1 cut(s) 574
PspGI CCWGG 3 cut(s) 399, 710, 1128
PspLI CGTACG 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 445, 910
PspPI GGNCC 3 cut(s) 107, 381, 714
PstNI CAGNNNCTG 1 cut(s) 97
PsuI RGATCY 1 cut(s) 1044
RsaI GTAC 2 cut(s) 290, 305
RsaNI GTAC 2 cut(s) 289, 304
RseI CAYNNNNRTG 3 cut(s) 323, 923, 1266
SatI GCNGC 5 cut(s) 92, 198, 627, 793, 912
Sau3AI GATC 8 cut(s) 39, 462, 576, 642, 888, 941, 1044, 1208
Sau96I GGNCC 3 cut(s) 107, 381, 714
SchI GAGTC 2 cut(s) 133, 564
ScrFI CCNGG 5 cut(s) 401, 712, 851, 1073, 1130
SduI GDGCHC 2 cut(s) 396, 1303
SfaNI GCATC 2 cut(s) 315, 480
SfoI GGCGCC 1 cut(s) 910
SinI GGWCC 2 cut(s) 107, 714
SmiMI CAYNNNNRTG 3 cut(s) 323, 923, 1266
SmlI CTYRAG 1 cut(s) 985
SmoI CTYRAG 1 cut(s) 985
SpeI ACTAGT 2 cut(s) 763, 1012
Sse9I AATT 5 cut(s) 531, 1290, 1348, 1409, 1431
SsiI CCGC 4 cut(s) 195, 198, 912, 971
SspDI GGCGCC 1 cut(s) 908
SspMI CTAG 5 cut(s) 468, 764, 857, 915, 1013
StyD4I CCNGG 5 cut(s) 399, 710, 849, 1071, 1128
TaaI ACNGT 8 cut(s) 99, 274, 308, 485, 880, 1024, 1064, 1147
TaiI ACGT 3 cut(s) 576, 684, 1266
TaqI TCGA 2 cut(s) 874, 1097
TasI AATT 5 cut(s) 531, 1290, 1348, 1409, 1431
TauI GCSGC 2 cut(s) 200, 914
TfiI GAWTC 5 cut(s) 456, 949, 1053, 1108, 1201
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 3 cut(s) 226, 556, 1067
TseI GCWGC 3 cut(s) 91, 626, 792
Tsp45I GTSAC 3 cut(s) 226, 556, 1067
TspDTI ATGAA 3 cut(s) 448, 773, 1371
TspGWI ACGGA 3 cut(s) 214, 306, 1221
TspRI CASTG 1 cut(s) 126
Van91I CCANNNNNTGG 1 cut(s) 378
VneI GTGCAC 1 cut(s) 1299
VpaK11BI GGWCC 2 cut(s) 107, 714
XapI RAATTY 1 cut(s) 1409
XbaI TCTAGA 1 cut(s) 856
XmiI GTMKAC 2 cut(s) 1009, 1419
XspI CTAG 5 cut(s) 468, 764, 857, 915, 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.