pycom11g08400

MATE efflux family protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
6519375 .. 6521854
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g08400.3

Sequence Viewer

Length: 1440 bp
ATGCCAACGCCTCAAGATTCCGATATATCGCCGAACGTGCCGGTTTCTACAAGATGGCTTGTAATTCAAGAAGCGAAATTGCAACTGTGGCTGGCGGGTCCTCTGATTGCAGTGAGCTTGTTGCAGTACAGCTTACAGGTCACAGCAGTCATGTTTGTCGGCCATATCGGAGAGTTGGAACTTTCTAGTGCTTCCATGGCCTCTTCCTTTGCTAATGTCACTGGATTCAGCGTCTTGTTGGGAATGGGAAGTGCATTGGAAACACTATGTGGGCAAGCCTACGGAGCCAAACAGTACCGCATGCTTGGAGTCCACATGCAAAAAGCAATGCTAATATTATTAGCAGTAAGCATTCCCTTATCGCTAGTCTGGTTCTACACAAGCAACATTCTCATGGCTCTTCACCAAGACCACGAGATATCTGCCGCGGCAGGAACCTTCAACCGCTGGATGATTCCGAGCCTGTTCGCCTTCAGCCTCCTCCAATGCCTCAACAGATTTTTACAGACGCAAAACAATGTGATTCCAATGATGATCACCTCTGGAGTCACAGCTTTGCTCCACATTGCGGTTTGTTGGGGACTTATTTTTAAATCTGGACTGCGAAACAAGGGTGCCGCGTTGGCAATTAGCATTTCGCATTGGCTTAACGTGGTGTTAGTGGCAAGTTATGTGCTGTTCTCGTCCGCCTGCAGGAAAACTTGGACTGGATTTTCGAAACAGGCATTGCATGACATTTTCAGCTTTGTCAAACTTGCCATTTCTTCAGCTGTAATGCTATGCCTTGAATATTGGTGCTTCGAAATGGTTGTTCTCTTATCCGGTCTTCTCCCAAACCCAAAACTAGAAACATCTGTGTTATCGATAAGCCTTAACACATGTTGGATGGTTTATACGATATCAGTTGGCCTTGGAAGCGCTATAAGCACAAGAGTGTCAAATGAACTGGGTGCTGGACGACCGCAAGGCGCAAAATTAGCTCTACGAGTCATGACTGTGATGGCTTTATTAGAGGGTGCTGCAATCGCAATAGCAACGGTTTTGATACGCCATGTTTGGGGAAAGCTCTACAGCAATGAGCATCAAGTGATCAAATATGTTGCTAAAATGATGCTACTGCTTGCAGTTTCCGACTTCTTGGATGGATTCCAATGTGTGCTTTCAGGGGCTGCCAGAGGCTGTGGATGGCAGAATCTTTGTGTAGCCATAAATCTTATTGCTTATTATGCTGTGGGAATTCCTACTGCTGTGGTTTTCGCCTTCGTCCTCCATATTGGAGGAATGGGACTTTGGATGGGAATCATTTGTGGACTTGTTGTTCAACTAACAGCACTTGTGGTGGTAAATTTACGCACTGATTGGAATAAAGAGGCAACGAAGGCTGCCGATCGTGTTCAGAATACCACCTCAGTCATCGACAGTACGACCTACGTAATTTGA

Protein Analysis

480

Amino Acids

51.98

Weight (kDa)

8.82

Isoelectric Point (pI)

31.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 614
AccII CGCG 2 cut(s) 428, 620
AciI CCGC 9 cut(s) 95, 298, 426, 428, 445, 569, 618, 687, 962
AcoI YGGCCR 1 cut(s) 160
AcsI RAATTY 2 cut(s) 1236, 1345
AcuI CTGAAG 2 cut(s) 457, 750
AdeI CACNNNGTG 1 cut(s) 269
AfaI GTAC 3 cut(s) 128, 296, 1423
AfeI AGCGCT 1 cut(s) 919
AfiI CCNNNNNNNGG 3 cut(s) 568, 693, 1057
AflIII ACRYGT 1 cut(s) 878
AgsI TTSAA 4 cut(s) 68, 442, 788, 1322
AjuI GAANNNNNNNTTGG 2 cut(s) 1273, 1305
AleI CACNNNNGTG 1 cut(s) 932
AloI GAACNNNNNNTCC 2 cut(s) 1302, 1334
AluBI AGCT 7 cut(s) 117, 132, 554, 744, 770, 980, 1066
AluI AGCT 7 cut(s) 117, 132, 554, 744, 770, 980, 1066
AlwNI CAGNNNCTG 2 cut(s) 1169, 1179
Aor51HI AGCGCT 1 cut(s) 919
AoxI GGCC 3 cut(s) 160, 198, 907
ApeKI GCWGC 3 cut(s) 1019, 1169, 1382
ApoI RAATTY 2 cut(s) 1236, 1345
ArsI GACNNNNNNTTYG 2 cut(s) 697, 729
AspLEI GCGC 2 cut(s) 920, 971
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 2 cut(s) 395, 529
AsuII TTCGAA 2 cut(s) 716, 801
AvaII GGWCC 1 cut(s) 98
BanI GGYRCC 1 cut(s) 614
BauI CACGAG 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 818
BbvI GCAGC 3 cut(s) 1006, 1156, 1369
BccI CCATC 6 cut(s) 48, 880, 994, 1136, 1179, 1288
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BclI TGATCA 2 cut(s) 534, 1089
BfaI CTAG 3 cut(s) 186, 365, 845
BfmI CTRYAG 2 cut(s) 691, 1069
BfoI RGCGCY 1 cut(s) 921
BglI GCCNNNNNGGC 1 cut(s) 623
BisI GCNGC 6 cut(s) 426, 429, 618, 1020, 1170, 1383
BlsI GCNGC 6 cut(s) 427, 430, 619, 1021, 1171, 1384
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 4 cut(s) 99, 286, 436, 616
BmrI ACTGGG 1 cut(s) 956
BmsI GCATC 2 cut(s) 1090, 1101
BmuI ACTGGG 1 cut(s) 956
BpiI GAAGAC 1 cut(s) 818
BpmI CTGGAG 1 cut(s) 564
Bpu14I TTCGAA 2 cut(s) 716, 801
Bsa29I ATCGAT 1 cut(s) 863
BsaAI YACGTR 1 cut(s) 1432
BsaBI GATNNNNATC 1 cut(s) 1298
BsaJI CCNNGG 3 cut(s) 195, 426, 910
BsaWI WCCGGW 1 cut(s) 821
Bsc4I CCNNNNNNNGG 3 cut(s) 568, 693, 1057
Bse118I RCCGGY 1 cut(s) 40
Bse1I ACTGG 3 cut(s) 226, 712, 951
Bse3DI GCAATG 4 cut(s) 333, 564, 725, 1081
Bse8I GATNNNNATC 1 cut(s) 1298
BseCI ATCGAT 1 cut(s) 863
BseDI CCNNGG 3 cut(s) 195, 426, 910
BseGI GGATG 5 cut(s) 456, 891, 1147, 1190, 1299
BseJI GATNNNNATC 1 cut(s) 1298
BseLI CCNNNNNNNGG 3 cut(s) 568, 693, 1057
BseMI GCAATG 4 cut(s) 333, 564, 725, 1081
BseMII CTCAG 1 cut(s) 1422
BseNI ACTGG 3 cut(s) 226, 712, 951
BseRI GAGGAG 1 cut(s) 470
BseXI GCAGC 3 cut(s) 1006, 1156, 1369
Bsh1236I CGCG 2 cut(s) 428, 620
Bsh1285I CGRYCG 2 cut(s) 962, 1390
BshFI GGCC 3 cut(s) 162, 200, 909
BshNI GGYRCC 1 cut(s) 614
BshVI ATCGAT 1 cut(s) 863
BsiEI CGRYCG 2 cut(s) 962, 1390
BsiSI CCGG 2 cut(s) 41, 822
BslFI GGGAC 2 cut(s) 594, 1299
BslI CCNNNNNNNGG 3 cut(s) 568, 693, 1057
BsmFI GGGAC 2 cut(s) 594, 1299
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 3 cut(s) 162, 200, 909
Bsp119I TTCGAA 2 cut(s) 716, 801
Bsp143I GATC 3 cut(s) 534, 1089, 1387
Bsp19I CCATGG 1 cut(s) 195
BspACI CCGC 9 cut(s) 95, 298, 426, 428, 445, 569, 618, 687, 962
BspANI GGCC 3 cut(s) 162, 200, 909
BspCNI CTCAG 1 cut(s) 1421
BspDI ATCGAT 1 cut(s) 863
BspFNI CGCG 2 cut(s) 428, 620
BspHI TCATGA 1 cut(s) 990
BspLI GGNNCC 4 cut(s) 99, 286, 436, 616
BspMAI CTGCAG 1 cut(s) 695
BspQI GCTCTTC 1 cut(s) 405
BspT104I TTCGAA 2 cut(s) 716, 801
BspT107I GGYRCC 1 cut(s) 614
BsrDI GCAATG 4 cut(s) 333, 564, 725, 1081
BsrFI RCCGGY 1 cut(s) 40
BsrI ACTGG 3 cut(s) 226, 712, 951
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 3 cut(s) 195, 426, 910
BssMI GATC 3 cut(s) 534, 1089, 1387
BssSI CACGAG 1 cut(s) 413
BssT1I CCWWGG 2 cut(s) 195, 910
Bst2BI CACGAG 1 cut(s) 413
Bst4CI ACNGT 5 cut(s) 87, 294, 997, 1039, 1421
Bst6I CTCTTC 2 cut(s) 208, 405
BstBAI YACGTR 1 cut(s) 1432
BstBI TTCGAA 2 cut(s) 716, 801
BstC8I GCNNGC 5 cut(s) 93, 276, 302, 691, 1122
BstDEI CTNAG 1 cut(s) 1408
BstDSI CCRYGG 2 cut(s) 195, 426
BstF5I GGATG 5 cut(s) 456, 891, 1147, 1190, 1299
BstFNI CGCG 2 cut(s) 428, 620
BstH2I RGCGCY 1 cut(s) 921
BstHHI GCGC 2 cut(s) 920, 971
BstKTI GATC 3 cut(s) 537, 1092, 1390
BstMBI GATC 3 cut(s) 534, 1089, 1387
BstMCI CGRYCG 2 cut(s) 962, 1390
BstNSI RCATGY 3 cut(s) 304, 319, 882
BstSFI CTRYAG 2 cut(s) 691, 1069
BstSNI TACGTA 1 cut(s) 1432
BstUI CGCG 2 cut(s) 428, 620
BstV1I GCAGC 3 cut(s) 1006, 1156, 1369
BstV2I GAAGAC 1 cut(s) 818
Bsu15I ATCGAT 1 cut(s) 863
BsuRI GGCC 3 cut(s) 162, 200, 909
BsuTUI ATCGAT 1 cut(s) 863
BtgI CCRYGG 2 cut(s) 195, 426
BtsCI GGATG 5 cut(s) 456, 891, 1147, 1190, 1299
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 3 cut(s) 117, 219, 1353
Cac8I GCNNGC 5 cut(s) 93, 276, 302, 691, 1122
CaiI CAGNNNCTG 2 cut(s) 1169, 1179
CciI TCATGA 1 cut(s) 990
CfoI GCGC 2 cut(s) 920, 971
Cfr10I RCCGGY 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 98
Cfr42I CCGCGG 1 cut(s) 429
ClaI ATCGAT 1 cut(s) 863
CseI GACGC 2 cut(s) 220, 517
Csp6I GTAC 3 cut(s) 127, 295, 1422
CviAII CATG 9 cut(s) 151, 196, 301, 316, 394, 731, 879, 991, 1052
CviQI GTAC 3 cut(s) 127, 295, 1422
DdeI CTNAG 1 cut(s) 1408
DpnI GATC 3 cut(s) 536, 1091, 1389
DpnII GATC 3 cut(s) 534, 1089, 1387
DraI TTTAAA 1 cut(s) 592
DraIII CACNNNGTG 1 cut(s) 269
EaeI YGGCCR 1 cut(s) 160
Eam1104I CTCTTC 2 cut(s) 208, 405
EarI CTCTTC 2 cut(s) 208, 405
EciI GGCGGA 1 cut(s) 676
Eco105I TACGTA 1 cut(s) 1432
Eco130I CCWWGG 2 cut(s) 195, 910
Eco32I GATATC 2 cut(s) 420, 900
Eco47I GGWCC 1 cut(s) 98
Eco47III AGCGCT 1 cut(s) 919
Eco57I CTGAAG 2 cut(s) 457, 750
EcoO109I RGGNCCY 1 cut(s) 98
EcoRI GAATTC 1 cut(s) 1236
EcoRV GATATC 2 cut(s) 420, 900
EcoT14I CCWWGG 2 cut(s) 195, 910
ErhI CCWWGG 2 cut(s) 195, 910
FaeI CATG 9 cut(s) 154, 199, 304, 319, 397, 734, 882, 994, 1055
FaqI GGGAC 2 cut(s) 594, 1299
FatI CATG 9 cut(s) 150, 195, 300, 315, 393, 730, 878, 990, 1051
FauI CCCGC 1 cut(s) 88
FbaI TGATCA 2 cut(s) 534, 1089
Fnu4HI GCNGC 6 cut(s) 426, 429, 618, 1020, 1170, 1383
FokI GGATG 5 cut(s) 463, 898, 1154, 1197, 1306
Fsp4HI GCNGC 6 cut(s) 426, 429, 618, 1020, 1170, 1383
FspBI CTAG 3 cut(s) 186, 365, 845
GlaI GCGC 2 cut(s) 919, 970
GluI GCNGC 6 cut(s) 426, 429, 618, 1020, 1170, 1383
GsuI CTGGAG 1 cut(s) 564
HaeII RGCGCY 1 cut(s) 921
HaeIII GGCC 3 cut(s) 162, 200, 909
HapII CCGG 2 cut(s) 41, 822
HgaI GACGC 2 cut(s) 220, 517
HhaI GCGC 2 cut(s) 920, 971
Hin1II CATG 9 cut(s) 154, 199, 304, 319, 397, 734, 882, 994, 1055
Hin6I GCGC 2 cut(s) 918, 969
HinP1I GCGC 2 cut(s) 918, 969
HpaII CCGG 2 cut(s) 41, 822
HphI GGTGA 2 cut(s) 395, 529
Hpy166II GTNNAC 2 cut(s) 313, 1310
Hpy188I TCNGA 6 cut(s) 22, 105, 170, 459, 1132, 1398
Hpy188III TCNNGA 5 cut(s) 14, 68, 543, 597, 991
Hpy8I GTNNAC 2 cut(s) 313, 1310
HpyAV CCTTC 4 cut(s) 448, 481, 1270, 1372
HpyCH4III ACNGT 5 cut(s) 87, 294, 997, 1039, 1421
HpyCH4IV ACGT 3 cut(s) 36, 651, 1431
HpyCH4V TGCA 9 cut(s) 82, 110, 124, 254, 319, 693, 730, 1022, 1124
HpyF3I CTNAG 1 cut(s) 1408
HpySE526I ACGT 3 cut(s) 36, 651, 1431
Hsp92II CATG 9 cut(s) 154, 199, 304, 319, 397, 734, 882, 994, 1055
HspAI GCGC 2 cut(s) 918, 969
Ksp22I TGATCA 2 cut(s) 534, 1089
KspI CCGCGG 1 cut(s) 429
Kzo9I GATC 3 cut(s) 534, 1089, 1387
LguI GCTCTTC 1 cut(s) 405
LmnI GCTCC 2 cut(s) 284, 564
Lsp1109I GCAGC 3 cut(s) 1006, 1156, 1369
LweI GCATC 2 cut(s) 1090, 1101
MaeI CTAG 3 cut(s) 186, 365, 845
MaeII ACGT 3 cut(s) 36, 651, 1431
MaeIII GTNAC 3 cut(s) 139, 217, 547
MalI GATC 3 cut(s) 536, 1091, 1389
MboI GATC 3 cut(s) 534, 1089, 1387
MboII GAAGA 4 cut(s) 195, 392, 756, 818
MluCI AATT 7 cut(s) 63, 77, 627, 974, 1236, 1345, 1434
MlyI GAGTC 3 cut(s) 318, 555, 996
MmeI TCCRAC 3 cut(s) 156, 863, 1155
MseI TTAA 3 cut(s) 591, 648, 873
MslI CAYNNNNRTG 3 cut(s) 392, 932, 995
MspA1I CMGCKG 3 cut(s) 428, 447, 770
MspI CCGG 2 cut(s) 41, 822
Mva1269I GAATGC 1 cut(s) 351
MvnI CGCG 2 cut(s) 428, 620
NcoI CCATGG 1 cut(s) 195
NdeII GATC 3 cut(s) 534, 1089, 1387
NlaIII CATG 9 cut(s) 154, 199, 304, 319, 397, 734, 882, 994, 1055
NlaIV GGNNCC 4 cut(s) 99, 286, 436, 616
NmuCI GTSAC 3 cut(s) 139, 217, 547
NspI RCATGY 3 cut(s) 304, 319, 882
NspV TTCGAA 2 cut(s) 716, 801
OliI CACNNNNGTG 1 cut(s) 932
PaeI GCATGC 1 cut(s) 304
PagI TCATGA 1 cut(s) 990
PciI ACATGT 1 cut(s) 878
PciSI GCTCTTC 1 cut(s) 405
PctI GAATGC 1 cut(s) 351
PfeI GAWTC 7 cut(s) 17, 225, 454, 523, 1146, 1192, 1299
PkrI GCNGC 6 cut(s) 427, 430, 619, 1021, 1171, 1384
Ple19I CGATCG 1 cut(s) 1390
PleI GAGTC 3 cut(s) 317, 554, 995
PpsI GAGTC 3 cut(s) 317, 554, 995
Ppu21I YACGTR 1 cut(s) 1432
PpuMI RGGWCCY 1 cut(s) 98
PscI ACATGT 1 cut(s) 878
Psp5II RGGWCCY 1 cut(s) 98
PspN4I GGNNCC 4 cut(s) 99, 286, 436, 616
PspPI GGNCC 1 cut(s) 98
PspPPI RGGWCCY 1 cut(s) 98
PstI CTGCAG 1 cut(s) 695
PstNI CAGNNNCTG 2 cut(s) 1169, 1179
PvuI CGATCG 1 cut(s) 1390
PvuII CAGCTG 1 cut(s) 770
RsaI GTAC 3 cut(s) 128, 296, 1423
RsaNI GTAC 3 cut(s) 127, 295, 1422
RseI CAYNNNNRTG 3 cut(s) 392, 932, 995
SacII CCGCGG 1 cut(s) 429
SapI GCTCTTC 1 cut(s) 405
SaqAI TTAA 3 cut(s) 591, 648, 873
SatI GCNGC 6 cut(s) 426, 429, 618, 1020, 1170, 1383
Sau3AI GATC 3 cut(s) 534, 1089, 1387
Sau96I GGNCC 1 cut(s) 98
SbfI CCTGCAGG 1 cut(s) 695
SchI GAGTC 3 cut(s) 318, 555, 996
SdaI CCTGCAGG 1 cut(s) 695
SfaNI GCATC 2 cut(s) 1090, 1101
SfcI CTRYAG 2 cut(s) 691, 1069
Sfr303I CCGCGG 1 cut(s) 429
SfuI TTCGAA 2 cut(s) 716, 801
SgrBI CCGCGG 1 cut(s) 429
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 3 cut(s) 392, 932, 995
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
SnaBI TACGTA 1 cut(s) 1432
SphI GCATGC 1 cut(s) 304
Sse8387I CCTGCAGG 1 cut(s) 695
Sse9I AATT 7 cut(s) 63, 77, 627, 974, 1236, 1345, 1434
SsiI CCGC 9 cut(s) 95, 298, 426, 428, 445, 569, 618, 687, 962
SspI AATATT 2 cut(s) 336, 791
SspMI CTAG 3 cut(s) 186, 365, 845
StyI CCWWGG 2 cut(s) 195, 910
TaaI ACNGT 5 cut(s) 87, 294, 997, 1039, 1421
TaiI ACGT 3 cut(s) 39, 654, 1434
TaqI TCGA 4 cut(s) 716, 801, 863, 1416
TasI AATT 7 cut(s) 63, 77, 627, 974, 1236, 1345, 1434
TatI WGTACW 1 cut(s) 126
TauI GCSGC 3 cut(s) 428, 431, 620
TfiI GAWTC 7 cut(s) 17, 225, 454, 523, 1146, 1192, 1299
Tru1I TTAA 3 cut(s) 591, 648, 873
Tru9I TTAA 3 cut(s) 591, 648, 873
TscAI CASTG 3 cut(s) 117, 226, 1360
TseFI GTSAC 3 cut(s) 139, 217, 547
TseI GCWGC 3 cut(s) 1019, 1169, 1382
Tsp45I GTSAC 3 cut(s) 139, 217, 547
TspDTI ATGAA 1 cut(s) 957
TspGWI ACGGA 1 cut(s) 297
TspRI CASTG 3 cut(s) 117, 226, 1360
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 2 cut(s) 1236, 1345
XceI RCATGY 3 cut(s) 304, 319, 882
XspI CTAG 3 cut(s) 186, 365, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.