Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8309941.1

Orthogroup ID

OG0008641

Physical Location & Seq

Genomic Coordinates Forward (+)

130 .. 672

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8309941.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgggaagtgcgttagagacgctatgtgggcaagcctatggggctaaacggtaccacatgcttggagttcatatgcaacgaggaatactgacattgttagcagtgagcattcccttggcactcatttggttctacacaagcaccattcttattgcgtttggccaagaccacgagatatccaacgaagcaggaactttcaatcgatggatgatgccgagtcttttcgcgtacagcctccttcaatgcctcaatagattcttacagacacaaaacaatgtgtttccaatgatgataagctctggaatcacagcttttcttcacattataatctgttgggcactttgtttcaaatttggactaggaagcaaaggcgcagcattggccattagcatttcctattgggttaatgtgttgttattggcaagttacgtgatgttctcgccggtctgcaagaacacttggacaggatttacgaaagaggcattgcatgatatcttaagctttatcaagcttgccattccatcagctataatgatatggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0008150 GO:0015238 GO:0015691 GO:0015893 GO:0016020 GO:0022857 GO:0030001 GO:0042221 GO:0042493 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0071944 GO:0072511

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

180

Amino Acids

20.11

Weight (kDa)

8.88

Isoelectric Point (pI)

30.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34360 AT2G34360
fragaria_vesca	FvH4_4g26340 FvH4_4g26340 FvH4_4g26340
malus_domestica	MD13G1031700.v1.1 MD16G1033800.v1.1
prunus_persica	Prupe.1G320500_v2.0.a1 Prupe.1G320500_v2.0.a1 Prupe.1G320500_v2.0.a1
pyrus_communis	pycom11g08400
rosa_chinensis	RchiOBHm_Chr4g0433921
rosa_laevigata	RLG00000006717
rosa_multiflora	Rmu_co8309941.1_g000001 Rmu_sc0000352.1_g000013
rosa_roxburghii	Rroxscaffold_5G00375340
rosa_rugosa	Rorug04G0272200 Rorug04G0272300
rosa_samantha	Rh4AG327300 Rh4BG334600 Rh4CG350400 Rh4DG331500
rosa_wichuraiana	Rw4G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
Acc65I	GGTACC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	51
AccII	CGCG	1 cut(s)	227
AcoI	YGGCCR	2 cut(s)	160, 381
AcsI	RAATTY	1 cut(s)	350
AfaI	GTAC	2 cut(s)	53, 230
AflII	CTTAAG	1 cut(s)	496
AgsI	TTSAA	3 cut(s)	199, 242, 349
AluBI	AGCT	5 cut(s)	297, 311, 501, 511, 527
AluI	AGCT	5 cut(s)	297, 311, 501, 511, 527
Alw26I	GTCTC	1 cut(s)	11
AoxI	GGCC	2 cut(s)	160, 381
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	350
Asp718I	GGTACC	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	340
BalI	TGGCCA	2 cut(s)	162, 383
BanI	GGYRCC	1 cut(s)	51
BauI	CACGAG	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	386
BccI	CCATC	2 cut(s)	198, 529
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	1 cut(s)	359
BfrI	CTTAAG	1 cut(s)	496
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
BmiI	GGNNCC	1 cut(s)	53
BmsI	GCATC	1 cut(s)	201
Bsa29I	ATCGAT	1 cut(s)	202
BsaAI	YACGTR	1 cut(s)	430
BsaJI	CCNNGG	1 cut(s)	114
Bse118I	RCCGGY	1 cut(s)	442
Bse3DI	GCAATG	1 cut(s)	482
BseCI	ATCGAT	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	213
BseMI	GCAATG	1 cut(s)	482
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	386
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	2 cut(s)	162, 383
BshNI	GGYRCC	1 cut(s)	51
BshVI	ATCGAT	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	443
BsmAI	GTCTC	1 cut(s)	11
BsmBI	CGTCTC	1 cut(s)	11
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	2 cut(s)	162, 383
Bsp1286I	GDGCHC	1 cut(s)	340
BspANI	GGCC	2 cut(s)	162, 383
BspDI	ATCGAT	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	53
BspT107I	GGYRCC	1 cut(s)	51
BspTI	CTTAAG	1 cut(s)	496
BsrDI	GCAATG	1 cut(s)	482
BsrFI	RCCGGY	1 cut(s)	442
BssAI	RCCGGY	1 cut(s)	442
BssECI	CCNNGG	1 cut(s)	114
BssSI	CACGAG	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	114
Bst2BI	CACGAG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	496
BstBAI	YACGTR	1 cut(s)	430
BstC8I	GCNNGC	2 cut(s)	33, 513
BstF5I	GGATG	1 cut(s)	213
BstFNI	CGCG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	374
BstMAI	GTCTC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 41, 380
BstNSI	RCATGY	1 cut(s)	61
BstSLI	GKGCMC	1 cut(s)	340
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	386
BstXI	CCANNNNNNTGG	1 cut(s)	62
Bsu15I	ATCGAT	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	162, 383
BsuTUI	ATCGAT	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	213
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	33, 513
CfoI	GCGC	1 cut(s)	374
Cfr10I	RCCGGY	1 cut(s)	442
ClaI	ATCGAT	1 cut(s)	202
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	52, 229
CviAII	CATG	2 cut(s)	58, 488
CviQI	GTAC	2 cut(s)	52, 229
EaeI	YGGCCR	2 cut(s)	160, 381
Eco130I	CCWWGG	1 cut(s)	114
Eco32I	GATATC	2 cut(s)	177, 493
EcoRV	GATATC	2 cut(s)	177, 493
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	2 cut(s)	61, 491
FaiI	YATR	9 cut(s)	25, 39, 59, 72, 74, 326, 489, 530, 538
FatI	CATG	2 cut(s)	57, 487
FauNDI	CATATG	1 cut(s)	72
Fnu4HI	GCNGC	1 cut(s)	375
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	162, 383
HapII	CCGG	1 cut(s)	443
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	2 cut(s)	61, 491
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HindIII	AAGCTT	2 cut(s)	499, 509
HinfI	GANTC	3 cut(s)	217, 255, 303
HpaII	CCGG	1 cut(s)	443
Hpy188III	TCNNGA	1 cut(s)	300
HpyAV	CCTTC	1 cut(s)	248
HpyCH4III	ACNGT	1 cut(s)	51
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	3 cut(s)	76, 450, 487
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 41, 380
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	2 cut(s)	61, 491
HspAI	GCGC	1 cut(s)	372
KpnI	GGTACC	1 cut(s)	55
LpnPI	CCDG	4 cut(s)	174, 285, 450, 456
Lsp1109I	GCAGC	1 cut(s)	386
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	1 cut(s)	425
MboII	GAAGA	1 cut(s)	308
MhlI	GDGCHC	1 cut(s)	340
MlsI	TGGCCA	2 cut(s)	162, 383
MluCI	AATT	1 cut(s)	350
MluNI	TGGCCA	2 cut(s)	162, 383
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	4 cut(s)	74, 245, 257, 472
Mox20I	TGGCCA	2 cut(s)	162, 383
MscI	TGGCCA	2 cut(s)	162, 383
MseI	TTAA	2 cut(s)	405, 497
Msp20I	TGGCCA	2 cut(s)	162, 383
MspCI	CTTAAG	1 cut(s)	496
MspI	CCGG	1 cut(s)	443
Mva1269I	GAATGC	1 cut(s)	108
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	3 cut(s)	28, 41, 380
NdeI	CATATG	1 cut(s)	72
NlaIII	CATG	2 cut(s)	61, 491
NlaIV	GGNNCC	1 cut(s)	53
NmeAIII	GCCGAG	1 cut(s)	240
NspI	RCATGY	1 cut(s)	61
PctI	GAATGC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	255, 303
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
Ppu21I	YACGTR	1 cut(s)	430
PsiI	TTATAA	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	53
RsaI	GTAC	2 cut(s)	53, 230
RsaNI	GTAC	2 cut(s)	52, 229
SaqAI	TTAA	2 cut(s)	405, 497
SatI	GCNGC	1 cut(s)	375
SchI	GAGTC	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	6 cut(s)	299, 313, 432, 503, 513, 529
SfaNI	GCATC	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	496
SmoI	CTYRAG	1 cut(s)	496
Sse9I	AATT	1 cut(s)	350
SspMI	CTAG	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	51
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	1 cut(s)	202
TasI	AATT	1 cut(s)	350
TfiI	GAWTC	2 cut(s)	255, 303
Tru1I	TTAA	2 cut(s)	405, 497
Tru9I	TTAA	2 cut(s)	405, 497
TscAI	CASTG	1 cut(s)	108
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	108
Vha464I	CTTAAG	1 cut(s)	496
XapI	RAATTY	1 cut(s)	350
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.