Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008641

Physical Location & Seq

Genomic Coordinates Forward (+)

30749131 .. 30752340

Gene Structure 3210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G320500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGCTATTTTTTCTCAGAATGGCAGAAGTGAGCGCAAGTGTTAAGACTCCTCTAATTCCAAACCAAGAAAGAAGCCATGAATTAGAGGGTGCAACCATATCCCAACAAGGATTTAGAAGAGGGGATTTTGTTGAAGAAGCAAAATTGCAACTGTGGCTAGCCGGGCCTCTTATTGCAGTTAGCTTGTTGCAGTACAGTTTACAAGTCACATCAGTCATGTATGTTGGTCATCTTGGAGAGTTGGCACTTTCCAGTGCTTCCATGGCCTCTTCCTTTGCTTCAGTCACAGGATTCAGTGTCTTGTTGGGAATGGGAAGTGCATTAGAGACACTATGTGGACAAGCCTATGGAGCCAAACAGTACAACATGCTTGGAGTTCACATGCAAAGAGCAATGCTAACATTATTGGTAGTAAGCATTCCCCTAGCGCTCATTTGGTTTTACACAAGCACCATTCTCATGGCTCTAGGCCAAGACCACGAGATATCGACTGAAGCAGGAACTTTCAACCAGTGGATGATTCCAAGCCTCTTTGCCTTTAGCCTCCTTCAATGCCTCAATAGATTTTTACAGACACAGAACAATGTGTTTCCAATGATGATAAGCTCTGGCATCACAGCTTTTCTTCACATTATGGTTTGTTGGGCACTTTGTTTTAAATTTGGACTAGGAAACAAAGGTGCAGCGTTGGCGATTAGTATTTCGAATTGGGTTAATGTGTTGTTATTGGCAAGTTATGTGAAGTTCTCGTTGGCCTGCAAGAACACTTGGACAGGATTTTCAGAAGAGGCATTGCATGACATTTTCAGCTTTATCAAACTTGCCATTCCATCAGCTATAATGATATGCTTCGAATATTGGTCCTTTGAAATGGTTGTTCTCTTATCTGGTCTTCTACCAAACCCAAAACTAGAAACATCTGTGTTATCAATAAGCCTTAACACATGTTGGATGGTCTATATGATATCAGTTGGCCTTGGCAGTGCAATAAGCACAAGAGTGTCAAATGAATTGGGTGCCGGACGACCACAAGGTGCCCAATTAGCCCTAAGAGTCATGACCATAATGGCTTTATCAGAGGGTGCTGCCATAGCAACAGCTACAGTTTTGGTACGCTATGTTTGGGGAAAGCTCTACAGCAACGAGAATGAAGTGATCATATATGTTGCTAAAATGATGCCACTGCTTGCACTATCTGACTTCTTGGATGGATTTCAATGTGTGCTTTCAGGAGCTGCCAGAGGCTGTGGATGGCAAAATCTTTGTGTTCTTATAAACCTTGGCGCTTACTATGTTGTGGGAATTCCTACTGCTGTGCTGTTTGCTTTCATCCTCCATATTGGAGGTATGGGGCTTTGGATGGGAATCATTTGTGGACTTCTTGTTCAAGTTACAGCCCTTGTTGCGGTAAATGTGTGCACTGATTGGTATGAGGAGGCAACGAAAGCTGCAAATAGAGTTCAAAATACAGTCCTAGTCATTGACAAGGCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0008150 GO:0015238 GO:0015691 GO:0015893 GO:0016020 GO:0022857 GO:0030001 GO:0042221 GO:0042493 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0071944 GO:0072511

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

499

Amino Acids

54.21

Weight (kDa)

6.18

Isoelectric Point (pI)

27.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34360 AT2G34360
fragaria_vesca	FvH4_4g26340 FvH4_4g26340 FvH4_4g26340
malus_domestica	MD13G1031700.v1.1 MD16G1033800.v1.1
prunus_persica	Prupe.1G320500_v2.0.a1 Prupe.1G320500_v2.0.a1 Prupe.1G320500_v2.0.a1
pyrus_communis	pycom11g08400
rosa_chinensis	RchiOBHm_Chr4g0433921
rosa_laevigata	RLG00000006717
rosa_multiflora	Rmu_co8309941.1_g000001 Rmu_sc0000352.1_g000013
rosa_roxburghii	Rroxscaffold_5G00375340
rosa_rugosa	Rorug04G0272200 Rorug04G0272300
rosa_samantha	Rh4AG327300 Rh4BG334600 Rh4CG350400 Rh4DG331500
rosa_wichuraiana	Rw4G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1274
AccB1I	GGYRCC	2 cut(s)	1016, 1034
AciI	CCGC	1 cut(s)	1406
AcsI	RAATTY	2 cut(s)	659, 1302
AcuI	CTGAAG	2 cut(s)	264, 513
AdeI	CACNNNGTG	2 cut(s)	335, 1034
AfaI	GTAC	3 cut(s)	194, 362, 1113
AfeI	AGCGCT	1 cut(s)	429
AfiI	CCNNNNNNNGG	1 cut(s)	1405
AflIII	ACRYGT	1 cut(s)	944
AgsI	TTSAA	7 cut(s)	134, 508, 551, 869, 1217, 1388, 1463
AjuI	GAANNNNNNNTTGG	2 cut(s)	734, 766
AleI	CACNNNNGTG	1 cut(s)	998
AloI	GAACNNNNNNTCC	2 cut(s)	1368, 1400
AluBI	AGCT	9 cut(s)	183, 606, 620, 810, 836, 1100, 1132, 1235, 1448
AluI	AGCT	9 cut(s)	183, 606, 620, 810, 836, 1100, 1132, 1235, 1448
Alw21I	GWGCWC	1 cut(s)	1421
Alw26I	GTCTC	1 cut(s)	320
Alw44I	GTGCAC	1 cut(s)	1417
AlwNI	CAGNNNCTG	2 cut(s)	1235, 1245
Aor51HI	AGCGCT	1 cut(s)	429
AoxI	GGCC	5 cut(s)	164, 264, 469, 753, 973
ApaLI	GTGCAC	1 cut(s)	1417
ApeKI	GCWGC	4 cut(s)	683, 1085, 1235, 1448
ApoI	RAATTY	2 cut(s)	659, 1302
AspLEI	GCGC	3 cut(s)	35, 430, 1286
AspS9I	GGNCC	2 cut(s)	164, 861
AsuC2I	CCSGG	1 cut(s)	163
AsuII	TTCGAA	2 cut(s)	704, 852
AsuNHI	GCTAGC	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	861
BaeGI	GKGCMC	3 cut(s)	649, 1039, 1421
BanI	GGYRCC	2 cut(s)	1016, 1034
BauI	CACGAG	1 cut(s)	479
BbsI	GAAGAC	1 cut(s)	884
Bbv12I	GWGCWC	1 cut(s)	1421
BbvI	GCAGC	4 cut(s)	695, 1072, 1222, 1435
BccI	CCATC	5 cut(s)	838, 946, 1202, 1245, 1354
BclI	TGATCA	1 cut(s)	1155
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	6 cut(s)	158, 425, 467, 668, 911, 1475
BfmI	CTRYAG	2 cut(s)	1101, 1135
BfoI	RGCGCY	2 cut(s)	431, 1287
BisI	GCNGC	4 cut(s)	684, 1086, 1236, 1449
BlsI	GCNGC	4 cut(s)	685, 1087, 1237, 1450
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	861
BmgT120I	GGNCC	2 cut(s)	164, 861
BmiI	GGNNCC	3 cut(s)	352, 1018, 1036
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	2 cut(s)	621, 1167
BmtI	GCTAGC	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	884
Bpu14I	TTCGAA	2 cut(s)	704, 852
BpuMI	CCSGG	1 cut(s)	163
BsaBI	GATNNNNATC	1 cut(s)	1364
BsaJI	CCNNGG	3 cut(s)	261, 976, 1279
Bsc4I	CCNNNNNNNGG	1 cut(s)	1405
Bse1I	ACTGG	2 cut(s)	252, 511
Bse3DI	GCAATG	2 cut(s)	399, 791
Bse8I	GATNNNNATC	1 cut(s)	1364
BseDI	CCNNGG	3 cut(s)	261, 976, 1279
BseGI	GGATG	6 cut(s)	522, 957, 1213, 1256, 1329, 1365
BseJI	GATNNNNATC	1 cut(s)	1364
BseLI	CCNNNNNNNGG	1 cut(s)	1405
BseMI	GCAATG	2 cut(s)	399, 791
BseMII	CTCAG	1 cut(s)	28
BseNI	ACTGG	2 cut(s)	252, 511
BseRI	GAGGAG	2 cut(s)	39, 1448
BseSI	GKGCMC	3 cut(s)	649, 1039, 1421
BseXI	GCAGC	4 cut(s)	695, 1072, 1222, 1435
BsgI	GTGCAG	1 cut(s)	702
BshFI	GGCC	5 cut(s)	166, 266, 471, 755, 975
BshNI	GGYRCC	2 cut(s)	1016, 1034
BsiHKAI	GWGCWC	1 cut(s)	1421
BsiSI	CCGG	2 cut(s)	162, 1020
BslI	CCNNNNNNNGG	1 cut(s)	1405
BsmAI	GTCTC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	417
BsnI	GGCC	5 cut(s)	166, 266, 471, 755, 975
Bsp119I	TTCGAA	2 cut(s)	704, 852
Bsp1286I	GDGCHC	3 cut(s)	649, 1039, 1421
Bsp143I	GATC	1 cut(s)	1155
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	1 cut(s)	1406
BspANI	GGCC	5 cut(s)	166, 266, 471, 755, 975
BspCNI	CTCAG	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	1056
BspLI	GGNNCC	3 cut(s)	352, 1018, 1036
BspOI	GCTAGC	1 cut(s)	161
BspT104I	TTCGAA	2 cut(s)	704, 852
BspT107I	GGYRCC	2 cut(s)	1016, 1034
BsrDI	GCAATG	2 cut(s)	399, 791
BsrI	ACTGG	2 cut(s)	252, 511
BssECI	CCNNGG	3 cut(s)	261, 976, 1279
BssMI	GATC	1 cut(s)	1155
BssSI	CACGAG	1 cut(s)	479
BssT1I	CCWWGG	3 cut(s)	261, 976, 1279
Bst2BI	CACGAG	1 cut(s)	479
Bst4CI	ACNGT	5 cut(s)	153, 197, 360, 1105, 1471
Bst6I	CTCTTC	3 cut(s)	112, 274, 780
BstBI	TTCGAA	2 cut(s)	704, 852
BstC8I	GCNNGC	3 cut(s)	159, 757, 1188
BstDEI	CTNAG	2 cut(s)	14, 1049
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	6 cut(s)	522, 957, 1213, 1256, 1329, 1365
BstH2I	RGCGCY	2 cut(s)	431, 1287
BstHHI	GCGC	3 cut(s)	35, 430, 1286
BstKTI	GATC	1 cut(s)	1158
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	1 cut(s)	1155
BstMWI	GCNNNNNNNGC	9 cut(s)	154, 163, 263, 350, 689, 1043, 1091, 1403, 1445
BstNSI	RCATGY	3 cut(s)	370, 385, 948
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	2 cut(s)	1101, 1135
BstSLI	GKGCMC	3 cut(s)	649, 1039, 1421
BstV1I	GCAGC	4 cut(s)	695, 1072, 1222, 1435
BstV2I	GAAGAC	1 cut(s)	884
BstXI	CCANNNNNNTGG	1 cut(s)	460
BsuRI	GGCC	5 cut(s)	166, 266, 471, 755, 975
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	6 cut(s)	522, 957, 1213, 1256, 1329, 1365
BtsI	GCAGTG	2 cut(s)	988, 1181
BtsIMutI	CAGTG	6 cut(s)	259, 301, 518, 988, 1181, 1419
Cac8I	GCNNGC	3 cut(s)	159, 757, 1188
CaiI	CAGNNNCTG	2 cut(s)	1235, 1245
CciI	TCATGA	1 cut(s)	1056
CfoI	GCGC	3 cut(s)	35, 430, 1286
Cfr13I	GGNCC	2 cut(s)	164, 861
Csp6I	GTAC	3 cut(s)	193, 361, 1112
CviAII	CATG	9 cut(s)	77, 217, 262, 367, 382, 460, 797, 945, 1057
CviQI	GTAC	3 cut(s)	193, 361, 1112
DdeI	CTNAG	2 cut(s)	14, 1049
DpnI	GATC	1 cut(s)	1157
DpnII	GATC	1 cut(s)	1155
DraI	TTTAAA	1 cut(s)	658
DraIII	CACNNNGTG	2 cut(s)	335, 1034
Eam1104I	CTCTTC	3 cut(s)	112, 274, 780
EarI	CTCTTC	3 cut(s)	112, 274, 780
Eco130I	CCWWGG	3 cut(s)	261, 976, 1279
Eco32I	GATATC	2 cut(s)	486, 966
Eco47I	GGWCC	1 cut(s)	861
Eco47III	AGCGCT	1 cut(s)	429
Eco57I	CTGAAG	2 cut(s)	264, 513
EcoRI	GAATTC	1 cut(s)	1302
EcoRV	GATATC	2 cut(s)	486, 966
EcoT14I	CCWWGG	3 cut(s)	261, 976, 1279
ErhI	CCWWGG	3 cut(s)	261, 976, 1279
FaeI	CATG	9 cut(s)	80, 220, 265, 370, 385, 463, 800, 948, 1060
FatI	CATG	9 cut(s)	76, 216, 261, 366, 381, 459, 796, 944, 1056
FbaI	TGATCA	1 cut(s)	1155
Fnu4HI	GCNGC	4 cut(s)	684, 1086, 1236, 1449
FokI	GGATG	6 cut(s)	529, 964, 1220, 1263, 1316, 1372
Fsp4HI	GCNGC	4 cut(s)	684, 1086, 1236, 1449
FspBI	CTAG	6 cut(s)	158, 425, 467, 668, 911, 1475
GlaI	GCGC	3 cut(s)	34, 429, 1285
GluI	GCNGC	4 cut(s)	684, 1086, 1236, 1449
HaeII	RGCGCY	2 cut(s)	431, 1287
HaeIII	GGCC	5 cut(s)	166, 266, 471, 755, 975
HapII	CCGG	2 cut(s)	162, 1020
HhaI	GCGC	3 cut(s)	35, 430, 1286
Hin1II	CATG	9 cut(s)	80, 220, 265, 370, 385, 463, 800, 948, 1060
Hin6I	GCGC	3 cut(s)	33, 428, 1284
HinP1I	GCGC	3 cut(s)	33, 428, 1284
HinfI	GANTC	5 cut(s)	46, 291, 520, 1053, 1365
HpaII	CCGG	2 cut(s)	162, 1020
Hpy166II	GTNNAC	5 cut(s)	200, 338, 379, 1376, 1419
Hpy188I	TCNGA	4 cut(s)	17, 784, 1078, 1198
Hpy188III	TCNNGA	2 cut(s)	1057, 1230
Hpy8I	GTNNAC	5 cut(s)	200, 338, 379, 1376, 1419
HpyAV	CCTTC	1 cut(s)	557
HpyCH4III	ACNGT	5 cut(s)	153, 197, 360, 1105, 1471
HpyF10VI	GCNNNNNNNGC	9 cut(s)	154, 163, 263, 350, 689, 1043, 1091, 1403, 1445
HpyF3I	CTNAG	2 cut(s)	14, 1049
Hsp92II	CATG	9 cut(s)	80, 220, 265, 370, 385, 463, 800, 948, 1060
HspAI	GCGC	3 cut(s)	33, 428, 1284
Ksp22I	TGATCA	1 cut(s)	1155
Kzo9I	GATC	1 cut(s)	1155
LmnI	GCTCC	2 cut(s)	350, 1232
Lsp1109I	GCAGC	4 cut(s)	695, 1072, 1222, 1435
LweI	GCATC	2 cut(s)	621, 1167
MaeI	CTAG	6 cut(s)	158, 425, 467, 668, 911, 1475
MaeIII	GTNAC	3 cut(s)	205, 283, 1390
MalI	GATC	1 cut(s)	1157
MboI	GATC	1 cut(s)	1155
MboII	GAAGA	6 cut(s)	129, 146, 261, 617, 797, 884
MhlI	GDGCHC	3 cut(s)	649, 1039, 1421
MluCI	AATT	8 cut(s)	54, 80, 143, 659, 706, 1010, 1040, 1302
MlyI	GAGTC	2 cut(s)	40, 1062
MmeI	TCCRAC	1 cut(s)	929
MseI	TTAA	4 cut(s)	42, 657, 714, 939
MslI	CAYNNNNRTG	2 cut(s)	458, 998
MspI	CCGG	2 cut(s)	162, 1020
MspR9I	CCNGG	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	417
MwoI	GCNNNNNNNGC	9 cut(s)	154, 163, 263, 350, 689, 1043, 1091, 1403, 1445
NciI	CCSGG	1 cut(s)	163
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	1 cut(s)	1155
NheI	GCTAGC	1 cut(s)	157
NlaIII	CATG	9 cut(s)	80, 220, 265, 370, 385, 463, 800, 948, 1060
NlaIV	GGNNCC	3 cut(s)	352, 1018, 1036
NmuCI	GTSAC	2 cut(s)	205, 283
NspI	RCATGY	3 cut(s)	370, 385, 948
NspV	TTCGAA	2 cut(s)	704, 852
OliI	CACNNNNGTG	1 cut(s)	998
PagI	TCATGA	1 cut(s)	1056
PciI	ACATGT	1 cut(s)	944
PctI	GAATGC	1 cut(s)	417
PfeI	GAWTC	3 cut(s)	291, 520, 1365
PkrI	GCNGC	4 cut(s)	685, 1087, 1237, 1450
PleI	GAGTC	2 cut(s)	40, 1061
PpsI	GAGTC	2 cut(s)	40, 1061
PscI	ACATGT	1 cut(s)	944
PsiI	TTATAA	1 cut(s)	1274
PspN4I	GGNNCC	3 cut(s)	352, 1018, 1036
PspPI	GGNCC	2 cut(s)	164, 861
PstNI	CAGNNNCTG	2 cut(s)	1235, 1245
RsaI	GTAC	3 cut(s)	194, 362, 1113
RsaNI	GTAC	3 cut(s)	193, 361, 1112
RseI	CAYNNNNRTG	2 cut(s)	458, 998
SaqAI	TTAA	4 cut(s)	42, 657, 714, 939
SatI	GCNGC	4 cut(s)	684, 1086, 1236, 1449
Sau3AI	GATC	1 cut(s)	1155
Sau96I	GGNCC	2 cut(s)	164, 861
SchI	GAGTC	2 cut(s)	40, 1062
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	3 cut(s)	649, 1039, 1421
SfaNI	GCATC	2 cut(s)	621, 1167
SfcI	CTRYAG	2 cut(s)	1101, 1135
SfuI	TTCGAA	2 cut(s)	704, 852
SinI	GGWCC	1 cut(s)	861
SmiMI	CAYNNNNRTG	2 cut(s)	458, 998
Sse9I	AATT	8 cut(s)	54, 80, 143, 659, 706, 1010, 1040, 1302
SsiI	CCGC	1 cut(s)	1406
SspI	AATATT	1 cut(s)	857
SspMI	CTAG	6 cut(s)	158, 425, 467, 668, 911, 1475
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	3 cut(s)	261, 976, 1279
TaaI	ACNGT	5 cut(s)	153, 197, 360, 1105, 1471
TaqI	TCGA	3 cut(s)	488, 704, 852
TasI	AATT	8 cut(s)	54, 80, 143, 659, 706, 1010, 1040, 1302
TatI	WGTACW	2 cut(s)	192, 360
TfiI	GAWTC	3 cut(s)	291, 520, 1365
Tru1I	TTAA	4 cut(s)	42, 657, 714, 939
Tru9I	TTAA	4 cut(s)	42, 657, 714, 939
TscAI	CASTG	6 cut(s)	259, 301, 518, 988, 1188, 1426
TseFI	GTSAC	2 cut(s)	205, 283
TseI	GCWGC	4 cut(s)	683, 1085, 1235, 1448
Tsp45I	GTSAC	2 cut(s)	205, 283
TspDTI	ATGAA	4 cut(s)	93, 1023, 1164, 1318
TspRI	CASTG	6 cut(s)	259, 301, 518, 988, 1188, 1426
VneI	GTGCAC	1 cut(s)	1417
VpaK11BI	GGWCC	1 cut(s)	861
XapI	RAATTY	2 cut(s)	659, 1302
XceI	RCATGY	3 cut(s)	370, 385, 948
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XspI	CTAG	6 cut(s)	158, 425, 467, 668, 911, 1475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.