FvH4_4g26340

MATE efflux family protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
27760392 .. 27763495
3104 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26340.t1

Sequence Viewer

Length: 1533 bp
ATGATCCCCCGCCTCACTAATTGCCTCCATGTCATTAACAATAAACAAAGCCAATCAGTTTCAGATGCCAAAGATGCTCTTTCTACAACAATGGCACAAGTGAGCTCAAGTCTTTGGACTCCTCTGGTTCCAAACGAAGGGAGAAACGATGGAATCGATGCCGAAACATCCCGGCAAGGATTTGGTAGTGTGGATGATGTTATTGAAGAAGCTAAGAAGCAACTATGGCTAGCAGGGCCTCTTATTGCAGTAAGTCTGCTGCAGTGTAGCTTACAGATCACGTCAGTCATGTTCGTCGGCCATCTCGGAGAGCTTGCACTTTCCGGTGCTTCCTTGGCCTCTTCGTTCGCTGCAGTAACCGGATTTGATATCTTGTTGGGAATGGCAAGTGCGTTAGAGACGCTATGTGGGCAAGCCTATGGGGCTAAACAGTACCACATGCTTGGAGTCCATATGCAACGAGGAATGCTAACATTGGTAGTAGTGAGCATGCCCTTGGCACTCATTTGGTTTTACACAGGCACCATTCTCATTGCTCTTGGCCAAGACCACGAGATATCCAAAGAAGCAGGAACTTTCAACCGATGGATGATACCGAGTCTTTTCGCCTATAGCCTCCTCCAATGCCTCAATAGATTCTTACAGACGCAAAACAATGTGTTTCCAATGATGATAAGCTCTGGAATCACAGCTTTTCTTCACATCATAGTCTGTTGGGCACTTTGCTTTAAAGTTGGCTTAGGCAGCAAAGGCGCAGCATTGGCCATTAGCATTTCGAATTGGGTGAATCTGTTGTTATTGGCAAGTTATGTGATATTCTCGCCAGTCTGCAAGAACACTTGGACAGGATTCTCAAAAGAGGCATTGCATGATATCTTAAGCTTTATCAAGCTTGCCATTCCATCAGCTATAATGATATGTTTCGAATATTGGACATTCGAAATGGTTGTTCTCTTGTCCGGTCTCCTCCCAAACCCAAAACTTGAGACATCTGTGTTATCAATAAGCCTTAACACATGTTGGACGGTCTATATGGTATCAGTTGGTCTTGGCAGTGCTATAAGTACAAGAGTATCGAATGAATTGGGTGCCGGAAGGCCACAAAGTGCACGGTTAGCTCTACAAGTCATGATCATAATGGCTTTATCCGAGGGTGCTGCTATAGCAATAGCTACAGTATCAGTCCGCCATGTTTGGGGAAAGCTCTACAGCAATGAGAATGAAGTGATCACATATGTTGCTAAAATGATGCCACTGCTTGCACTATCTGACTTCTTGGATGGATTCCAATGTGTGCTTTCAGGAGCTGCTAGAGGGTGTGGATGGCAAAATCTTTGTGTTTACATAAACCTTGGGGCTTACTATGTTGTTGGAATTCCTACTGCTGTGCTTTTTGCTTTCATCCTTCATATTGGAGGCATGGGGCTCTGGATGGGAATCATTTGTGCACTTCTTGTTCAAGTTACCGCACTTGTTGCAGTAAATGCCTGCACTGACTGGTCTCAAGAGATTGCAGGCCCTGAAAGCTGCTGA

Protein Analysis

511

Amino Acids

54.98

Weight (kDa)

5.99

Isoelectric Point (pI)

33.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 80 - 239 3.3e-38 MatE
MatE PF01554 301 - 463 4.7e-30 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 521, 1088
AciI CCGC 3 cut(s) 10, 1186, 1467
AcoI YGGCCR 3 cut(s) 298, 541, 762
AcsI RAATTY 1 cut(s) 1374
AdeI CACNNNGTG 1 cut(s) 1106
AfaI GTAC 2 cut(s) 434, 1066
AfiI CCNNNNNNNGG 2 cut(s) 137, 1195
AflII CTTAAG 1 cut(s) 877
AflIII ACRYGT 1 cut(s) 1016
AgsI TTSAA 3 cut(s) 206, 580, 1460
AjiI CACGTC 1 cut(s) 282
Alw21I GWGCWC 3 cut(s) 107, 1111, 1450
Alw26I GTCTC 4 cut(s) 392, 968, 980, 1506
Alw44I GTGCAC 2 cut(s) 1107, 1446
AlwNI CAGNNNCTG 2 cut(s) 1307, 1520
AoxI GGCC 7 cut(s) 236, 298, 336, 541, 762, 1097, 1516
ApaLI GTGCAC 2 cut(s) 1107, 1446
ApeKI GCWGC 7 cut(s) 259, 350, 744, 755, 1157, 1307, 1527
ApoI RAATTY 1 cut(s) 1374
AspLEI GCGC 1 cut(s) 755
AspS9I GGNCC 2 cut(s) 236, 1517
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 796
AsuII TTCGAA 3 cut(s) 776, 924, 939
AsuNHI GCTAGC 1 cut(s) 229
BaeGI GKGCMC 3 cut(s) 721, 1111, 1450
BaeI ACNNNNGTAYC 2 cut(s) 1056, 1089
BalI TGGCCA 2 cut(s) 543, 764
BanI GGYRCC 2 cut(s) 521, 1088
BanII GRGCYC 2 cut(s) 107, 1428
BauI CACGAG 1 cut(s) 551
Bbv12I GWGCWC 3 cut(s) 107, 1111, 1450
BbvI GCAGC 7 cut(s) 246, 337, 756, 767, 1144, 1294, 1514
BccI CCATC 7 cut(s) 143, 309, 579, 910, 1274, 1317, 1426
BcgI CGANNNNNNTGC 2 cut(s) 1139, 1173
BclI TGATCA 2 cut(s) 1131, 1227
BcnI CCSGG 1 cut(s) 172
BcoDI GTCTC 4 cut(s) 392, 968, 980, 1506
BfaI CTAG 2 cut(s) 230, 1311
BfmI CTRYAG 6 cut(s) 260, 351, 610, 1161, 1173, 1207
BfrI CTTAAG 1 cut(s) 877
BglI GCCNNNNNGGC 1 cut(s) 422
BisI GCNGC 7 cut(s) 260, 351, 745, 756, 1158, 1308, 1528
BlsI GCNGC 7 cut(s) 261, 352, 746, 757, 1159, 1309, 1529
Bme1390I CCNGG 1 cut(s) 172
BmgBI CACGTC 1 cut(s) 282
BmgT120I GGNCC 2 cut(s) 236, 1517
BmiI GGNNCC 3 cut(s) 129, 523, 1090
BmrFI CCNGG 1 cut(s) 172
BmsI GCATC 4 cut(s) 55, 64, 148, 1239
BmtI GCTAGC 1 cut(s) 233
Bpu10I CCTNAGC 1 cut(s) 739
Bpu14I TTCGAA 3 cut(s) 776, 924, 939
BpuEI CTTGAG 3 cut(s) 91, 1004, 1488
BpuMI CCSGG 1 cut(s) 172
Bsa29I ATCGAT 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 1436
BsaI GGTCTC 2 cut(s) 968, 1506
BsaJI CCNNGG 4 cut(s) 333, 495, 1149, 1351
BsaWI WCCGGW 3 cut(s) 323, 359, 959
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 1195
Bse1I ACTGG 2 cut(s) 824, 1502
Bse3DI GCAATG 3 cut(s) 531, 863, 1219
Bse8I GATNNNNATC 1 cut(s) 1436
BseCI ATCGAT 1 cut(s) 156
BseDI CCNNGG 4 cut(s) 333, 495, 1149, 1351
BseGI GGATG 7 cut(s) 167, 199, 594, 1285, 1328, 1401, 1437
BseJI GATNNNNATC 1 cut(s) 1436
BseLI CCNNNNNNNGG 2 cut(s) 137, 1195
BseMI GCAATG 3 cut(s) 531, 863, 1219
BseNI ACTGG 2 cut(s) 824, 1502
BseRI GAGGAG 3 cut(s) 111, 608, 956
BseSI GKGCMC 3 cut(s) 721, 1111, 1450
BseXI GCAGC 7 cut(s) 246, 337, 756, 767, 1144, 1294, 1514
BsgI GTGCAG 1 cut(s) 1474
BshFI GGCC 7 cut(s) 238, 300, 338, 543, 764, 1099, 1518
BshNI GGYRCC 2 cut(s) 521, 1088
BshVI ATCGAT 1 cut(s) 156
BsiHKAI GWGCWC 3 cut(s) 107, 1111, 1450
BsiSI CCGG 5 cut(s) 172, 324, 360, 960, 1092
BslI CCNNNNNNNGG 2 cut(s) 137, 1195
BsmAI GTCTC 4 cut(s) 392, 968, 980, 1506
BsmBI CGTCTC 1 cut(s) 392
BsmI GAATGC 1 cut(s) 471
BsnI GGCC 7 cut(s) 238, 300, 338, 543, 764, 1099, 1518
Bso31I GGTCTC 2 cut(s) 968, 1506
Bsp119I TTCGAA 3 cut(s) 776, 924, 939
Bsp1286I GDGCHC 5 cut(s) 107, 721, 1111, 1428, 1450
Bsp143I GATC 4 cut(s) 3, 276, 1131, 1227
BspACI CCGC 3 cut(s) 10, 1186, 1467
BspANI GGCC 7 cut(s) 238, 300, 338, 543, 764, 1099, 1518
BspDI ATCGAT 1 cut(s) 156
BspHI TCATGA 1 cut(s) 1128
BspLI GGNNCC 3 cut(s) 129, 523, 1090
BspMAI CTGCAG 2 cut(s) 264, 355
BspOI GCTAGC 1 cut(s) 233
BspT104I TTCGAA 3 cut(s) 776, 924, 939
BspT107I GGYRCC 2 cut(s) 521, 1088
BspTI CTTAAG 1 cut(s) 877
BspTNI GGTCTC 2 cut(s) 968, 1506
BsrDI GCAATG 3 cut(s) 531, 863, 1219
BsrI ACTGG 2 cut(s) 824, 1502
BssECI CCNNGG 4 cut(s) 333, 495, 1149, 1351
BssMI GATC 4 cut(s) 3, 276, 1131, 1227
BssSI CACGAG 1 cut(s) 551
BssT1I CCWWGG 3 cut(s) 333, 495, 1351
Bst2BI CACGAG 1 cut(s) 551
Bst4CI ACNGT 4 cut(s) 432, 1027, 1113, 1177
Bst6I CTCTTC 1 cut(s) 346
BstAFI CTTAAG 1 cut(s) 877
BstAPI GCANNNNNTGC 2 cut(s) 1475, 1484
BstBI TTCGAA 3 cut(s) 776, 924, 939
BstC8I GCNNGC 8 cut(s) 231, 315, 414, 491, 894, 1260, 1489, 1516
BstDEI CTNAG 2 cut(s) 213, 739
BstF5I GGATG 7 cut(s) 167, 199, 594, 1285, 1328, 1401, 1437
BstHHI GCGC 1 cut(s) 755
BstKTI GATC 4 cut(s) 6, 279, 1134, 1230
BstMAI GTCTC 4 cut(s) 392, 968, 980, 1506
BstMBI GATC 4 cut(s) 3, 276, 1131, 1227
BstNSI RCATGY 3 cut(s) 442, 493, 1020
BstSCI CCNGG 1 cut(s) 170
BstSFI CTRYAG 6 cut(s) 260, 351, 610, 1161, 1173, 1207
BstSLI GKGCMC 3 cut(s) 721, 1111, 1450
BstV1I GCAGC 7 cut(s) 246, 337, 756, 767, 1144, 1294, 1514
BstXI CCANNNNNNTGG 1 cut(s) 443
Bsu15I ATCGAT 1 cut(s) 156
BsuRI GGCC 7 cut(s) 238, 300, 338, 543, 764, 1099, 1518
BsuTUI ATCGAT 1 cut(s) 156
BtrI CACGTC 1 cut(s) 282
BtsCI GGATG 7 cut(s) 167, 199, 594, 1285, 1328, 1401, 1437
BtsI GCAGTG 3 cut(s) 269, 1060, 1253
BtsIMutI CAGTG 4 cut(s) 269, 1060, 1253, 1491
Cac8I GCNNGC 8 cut(s) 231, 315, 414, 491, 894, 1260, 1489, 1516
CaiI CAGNNNCTG 2 cut(s) 1307, 1520
CciI TCATGA 1 cut(s) 1128
CfoI GCGC 1 cut(s) 755
Cfr13I GGNCC 2 cut(s) 236, 1517
ClaI ATCGAT 1 cut(s) 156
CseI GACGC 2 cut(s) 409, 655
Csp6I GTAC 2 cut(s) 433, 1065
CviAII CATG 9 cut(s) 29, 289, 439, 490, 869, 1017, 1129, 1190, 1420
CviQI GTAC 2 cut(s) 433, 1065
DdeI CTNAG 2 cut(s) 213, 739
DpnI GATC 4 cut(s) 5, 278, 1133, 1229
DpnII GATC 4 cut(s) 3, 276, 1131, 1227
DraI TTTAAA 1 cut(s) 730
DraIII CACNNNGTG 1 cut(s) 1106
EaeI YGGCCR 3 cut(s) 298, 541, 762
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
EciI GGCGGA 1 cut(s) 1175
Ecl136II GAGCTC 1 cut(s) 105
Eco130I CCWWGG 3 cut(s) 333, 495, 1351
Eco24I GRGCYC 2 cut(s) 107, 1428
Eco31I GGTCTC 2 cut(s) 968, 1506
Eco32I GATATC 3 cut(s) 370, 558, 874
Eco53kI GAGCTC 1 cut(s) 105
EcoICRI GAGCTC 1 cut(s) 105
EcoO109I RGGNCCY 2 cut(s) 236, 1517
EcoRI GAATTC 1 cut(s) 1374
EcoRV GATATC 3 cut(s) 370, 558, 874
EcoT14I CCWWGG 3 cut(s) 333, 495, 1351
EcoT38I GRGCYC 2 cut(s) 107, 1428
ErhI CCWWGG 3 cut(s) 333, 495, 1351
Esp3I CGTCTC 1 cut(s) 392
FaeI CATG 9 cut(s) 32, 292, 442, 493, 872, 1020, 1132, 1193, 1423
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FatI CATG 9 cut(s) 28, 288, 438, 489, 868, 1016, 1128, 1189, 1419
FauI CCCGC 1 cut(s) 17
FauNDI CATATG 2 cut(s) 453, 1234
FbaI TGATCA 2 cut(s) 1131, 1227
Fnu4HI GCNGC 7 cut(s) 260, 351, 745, 756, 1158, 1308, 1528
FokI GGATG 7 cut(s) 154, 206, 601, 1292, 1335, 1388, 1444
FriOI GRGCYC 2 cut(s) 107, 1428
Fsp4HI GCNGC 7 cut(s) 260, 351, 745, 756, 1158, 1308, 1528
FspBI CTAG 2 cut(s) 230, 1311
GlaI GCGC 1 cut(s) 754
GluI GCNGC 7 cut(s) 260, 351, 745, 756, 1158, 1308, 1528
HaeIII GGCC 7 cut(s) 238, 300, 338, 543, 764, 1099, 1518
HapII CCGG 5 cut(s) 172, 324, 360, 960, 1092
HgaI GACGC 2 cut(s) 409, 655
HhaI GCGC 1 cut(s) 755
Hin1II CATG 9 cut(s) 32, 292, 442, 493, 872, 1020, 1132, 1193, 1423
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HindIII AAGCTT 2 cut(s) 880, 890
HpaII CCGG 5 cut(s) 172, 324, 360, 960, 1092
HphI GGTGA 1 cut(s) 796
Hpy166II GTNNAC 3 cut(s) 1109, 1342, 1448
Hpy188I TCNGA 4 cut(s) 64, 308, 1150, 1270
Hpy188III TCNNGA 5 cut(s) 681, 1129, 1302, 1429, 1505
Hpy8I GTNNAC 3 cut(s) 1109, 1342, 1448
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 3 cut(s) 131, 1089, 1415
HpyCH4III ACNGT 4 cut(s) 432, 1027, 1113, 1177
HpyCH4IV ACGT 1 cut(s) 281
HpyF3I CTNAG 2 cut(s) 213, 739
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 9 cut(s) 32, 292, 442, 493, 872, 1020, 1132, 1193, 1423
HspAI GCGC 1 cut(s) 753
Ksp22I TGATCA 2 cut(s) 1131, 1227
Kzo9I GATC 4 cut(s) 3, 276, 1131, 1227
LmnI GCTCC 1 cut(s) 1304
Lsp1109I GCAGC 7 cut(s) 246, 337, 756, 767, 1144, 1294, 1514
LweI GCATC 4 cut(s) 55, 64, 148, 1239
MaeI CTAG 2 cut(s) 230, 1311
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 2 cut(s) 355, 1462
MalI GATC 4 cut(s) 5, 278, 1133, 1229
MboI GATC 4 cut(s) 3, 276, 1131, 1227
MboII GAAGA 3 cut(s) 218, 333, 689
MhlI GDGCHC 5 cut(s) 107, 721, 1111, 1428, 1450
MlsI TGGCCA 2 cut(s) 543, 764
MluCI AATT 4 cut(s) 19, 778, 1082, 1374
MluNI TGGCCA 2 cut(s) 543, 764
MlyI GAGTC 3 cut(s) 112, 456, 607
MmeI TCCRAC 2 cut(s) 1001, 1351
Mox20I TGGCCA 2 cut(s) 543, 764
MscI TGGCCA 2 cut(s) 543, 764
MseI TTAA 4 cut(s) 36, 729, 878, 1011
Msp20I TGGCCA 2 cut(s) 543, 764
MspCI CTTAAG 1 cut(s) 877
MspI CCGG 5 cut(s) 172, 324, 360, 960, 1092
MspR9I CCNGG 1 cut(s) 172
Mva1269I GAATGC 1 cut(s) 471
NciI CCSGG 1 cut(s) 172
NdeI CATATG 2 cut(s) 453, 1234
NdeII GATC 4 cut(s) 3, 276, 1131, 1227
NheI GCTAGC 1 cut(s) 229
NlaIII CATG 9 cut(s) 32, 292, 442, 493, 872, 1020, 1132, 1193, 1423
NlaIV GGNNCC 3 cut(s) 129, 523, 1090
NspI RCATGY 3 cut(s) 442, 493, 1020
NspV TTCGAA 3 cut(s) 776, 924, 939
PaeI GCATGC 1 cut(s) 493
PagI TCATGA 1 cut(s) 1128
PciI ACATGT 1 cut(s) 1016
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 1 cut(s) 471
PfeI GAWTC 7 cut(s) 153, 636, 684, 787, 849, 1284, 1437
PkrI GCNGC 7 cut(s) 261, 352, 746, 757, 1159, 1309, 1529
PleI GAGTC 3 cut(s) 112, 455, 606
PpsI GAGTC 3 cut(s) 112, 455, 606
PscI ACATGT 1 cut(s) 1016
Psp124BI GAGCTC 1 cut(s) 107
PspN4I GGNNCC 3 cut(s) 129, 523, 1090
PspPI GGNCC 2 cut(s) 236, 1517
PstI CTGCAG 2 cut(s) 264, 355
PstNI CAGNNNCTG 2 cut(s) 1307, 1520
RsaI GTAC 2 cut(s) 434, 1066
RsaNI GTAC 2 cut(s) 433, 1065
SacI GAGCTC 1 cut(s) 107
SaqAI TTAA 4 cut(s) 36, 729, 878, 1011
SatI GCNGC 7 cut(s) 260, 351, 745, 756, 1158, 1308, 1528
Sau3AI GATC 4 cut(s) 3, 276, 1131, 1227
Sau96I GGNCC 2 cut(s) 236, 1517
SchI GAGTC 3 cut(s) 112, 456, 607
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 5 cut(s) 107, 721, 1111, 1428, 1450
SfaNI GCATC 4 cut(s) 55, 64, 148, 1239
SfcI CTRYAG 6 cut(s) 260, 351, 610, 1161, 1173, 1207
SfuI TTCGAA 3 cut(s) 776, 924, 939
SmlI CTYRAG 4 cut(s) 106, 877, 983, 1503
SmoI CTYRAG 4 cut(s) 106, 877, 983, 1503
SphI GCATGC 1 cut(s) 493
Sse9I AATT 4 cut(s) 19, 778, 1082, 1374
SsiI CCGC 3 cut(s) 10, 1186, 1467
SspI AATATT 1 cut(s) 929
SspMI CTAG 2 cut(s) 230, 1311
SstI GAGCTC 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 170
StyI CCWWGG 3 cut(s) 333, 495, 1351
TaaI ACNGT 4 cut(s) 432, 1027, 1113, 1177
TaiI ACGT 1 cut(s) 284
TaqI TCGA 5 cut(s) 156, 776, 924, 939, 1076
TasI AATT 4 cut(s) 19, 778, 1082, 1374
TatI WGTACW 1 cut(s) 1064
TfiI GAWTC 7 cut(s) 153, 636, 684, 787, 849, 1284, 1437
Tru1I TTAA 4 cut(s) 36, 729, 878, 1011
Tru9I TTAA 4 cut(s) 36, 729, 878, 1011
TscAI CASTG 4 cut(s) 269, 1060, 1260, 1498
TseI GCWGC 7 cut(s) 259, 350, 744, 755, 1157, 1307, 1527
TspDTI ATGAA 4 cut(s) 1095, 1236, 1390, 1397
TspRI CASTG 4 cut(s) 269, 1060, 1260, 1498
Vha464I CTTAAG 1 cut(s) 877
VneI GTGCAC 2 cut(s) 1107, 1446
XapI RAATTY 1 cut(s) 1374
XceI RCATGY 3 cut(s) 442, 493, 1020
XspI CTAG 2 cut(s) 230, 1311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.