Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000352.1

Orthogroup ID

OG0008641

Physical Location & Seq

Genomic Coordinates Reverse (-)

37313 .. 39012

Gene Structure 1700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000352.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atgggaagtgcgttagagacgctatgtgggcaagcctatggggctaaacggtaccacatgcttggagttcatatgcaacgaggaatactgacattgttagcagtgagcattcccttggcactcatttggttctacacaagcaccattcttattgcgtttggccaagaccacgagatatccaacgaagcaggaactttcaatcgatggatgatgccgagtcttttcgcgtacagcctccttcaatgcctcaatagattcttacagacacaaaacaatgtgtttccaatgatgataagctctggaatcacagcttttcttcacattataatctgttgggcactttgtttcaaatttggactaggaagcaaaggcgcagcattggccattagcatttcctattgggttaatgtgttgttattggcaagttacgtgatgttctcgccggtctgcaagaacacttggacaggatttacgaaagaggcattgcatgatatcttaagctttatcaagcttgccattccatcagctataatgatatgttttgaatattggacattcgaaatggttgttctcttgtccggtctcctcccaaatccaaaacttgagacatctgtgttatctgtaagcagccttaacacatgttggatggtctatatgatatcagttggtcttggcagtgctataagtactagagtgtcaaatgaattaggtgcggggcggccacaaagtgcacgattagctctacaagtcatgatcacaatggctttatctgagggtgctgctatagcaatagccacagtatcggttcgccgtgtttggggagtactatacagcaacgagaatgaagtgatcagatatgttgctgaaatgatgccactgcttgcactatctgacttcttggatggattccaatgtgtactttcaggggctgccagagggtgtggatggcaaaatctttgtgtatgcataaaccttggggcttactatgttgtgggaattcctagtgctgtgctttttgctttcatccttcatattggaggcatggggctttggatgggtatcatttgtgcactttttgttcaagttactgcacttgtggcagtaaatgcctgcaccgactggcatcaagaggccatgaaagctgctcatagagttcagaataccagcttggtgattgacaaggcagtagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0008150 GO:0015238 GO:0015691 GO:0015893 GO:0016020 GO:0022857 GO:0030001 GO:0042221 GO:0042493 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0071944 GO:0072511

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

397

Amino Acids

43.39

Weight (kDa)

7.93

Isoelectric Point (pI)

30.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34360 AT2G34360
fragaria_vesca	FvH4_4g26340 FvH4_4g26340 FvH4_4g26340
malus_domestica	MD13G1031700.v1.1 MD16G1033800.v1.1
prunus_persica	Prupe.1G320500_v2.0.a1 Prupe.1G320500_v2.0.a1 Prupe.1G320500_v2.0.a1
pyrus_communis	pycom11g08400
rosa_chinensis	RchiOBHm_Chr4g0433921
rosa_laevigata	RLG00000006717
rosa_multiflora	Rmu_co8309941.1_g000001 Rmu_sc0000352.1_g000013
rosa_roxburghii	Rroxscaffold_5G00375340
rosa_rugosa	Rorug04G0272200 Rorug04G0272300
rosa_samantha	Rh4AG327300 Rh4BG334600 Rh4CG350400 Rh4DG331500
rosa_wichuraiana	Rw4G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
Acc65I	GGTACC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	51
AccII	CGCG	1 cut(s)	227
AciI	CCGC	2 cut(s)	713, 718
AcoI	YGGCCR	3 cut(s)	160, 381, 719
AcsI	RAATTY	2 cut(s)	350, 996
AdeI	CACNNNGTG	1 cut(s)	728
AfaI	GTAC	5 cut(s)	53, 230, 688, 825, 918
AfiI	CCNNNNNNNGG	1 cut(s)	817
AflII	CTTAAG	1 cut(s)	496
AflIII	ACRYGT	1 cut(s)	638
AgsI	TTSAA	5 cut(s)	199, 242, 349, 545, 1082
AjuI	GAANNNNNNNTTGG	2 cut(s)	1151, 1183
AluBI	AGCT	9 cut(s)	297, 311, 501, 511, 527, 740, 1142, 1167, 1190
AluI	AGCT	9 cut(s)	297, 311, 501, 511, 527, 740, 1142, 1167, 1190
Alw21I	GWGCWC	2 cut(s)	733, 1072
Alw26I	GTCTC	3 cut(s)	11, 587, 599
Alw44I	GTGCAC	2 cut(s)	729, 1068
AlwNI	CAGNNNCTG	1 cut(s)	929
AoxI	GGCC	4 cut(s)	160, 381, 719, 1131
ApaLI	GTGCAC	2 cut(s)	729, 1068
ApeKI	GCWGC	5 cut(s)	374, 627, 779, 929, 1142
ApoI	RAATTY	2 cut(s)	350, 996
Asp718I	GGTACC	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	1183
AsuII	TTCGAA	1 cut(s)	558
BaeGI	GKGCMC	3 cut(s)	340, 733, 1072
BalI	TGGCCA	2 cut(s)	162, 383
BanI	GGYRCC	1 cut(s)	51
BauI	CACGAG	1 cut(s)	170
Bbv12I	GWGCWC	2 cut(s)	733, 1072
BbvI	GCAGC	5 cut(s)	386, 639, 766, 916, 1129
BccI	CCATC	6 cut(s)	198, 529, 640, 896, 939, 1048
BceAI	ACGGC	1 cut(s)	795
BclI	TGATCA	2 cut(s)	753, 849
BcoDI	GTCTC	3 cut(s)	11, 587, 599
BfaI	CTAG	3 cut(s)	359, 690, 1002
BfmI	CTRYAG	1 cut(s)	783
BfrI	CTTAAG	1 cut(s)	496
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	6 cut(s)	375, 628, 719, 780, 930, 1143
BlsI	GCNGC	6 cut(s)	376, 629, 720, 781, 931, 1144
BmcAI	AGTACT	2 cut(s)	688, 825
BmiI	GGNNCC	1 cut(s)	53
BmsI	GCATC	3 cut(s)	201, 861, 1132
Bpu14I	TTCGAA	1 cut(s)	558
BpuEI	CTTGAG	1 cut(s)	623
Bsa29I	ATCGAT	1 cut(s)	202
BsaAI	YACGTR	1 cut(s)	430
BsaBI	GATNNNNATC	1 cut(s)	1058
BsaI	GGTCTC	1 cut(s)	587
BsaJI	CCNNGG	2 cut(s)	114, 973
BsaWI	WCCGGW	1 cut(s)	578
Bsc4I	CCNNNNNNNGG	1 cut(s)	817
Bse118I	RCCGGY	1 cut(s)	442
Bse1I	ACTGG	1 cut(s)	1124
Bse3DI	GCAATG	1 cut(s)	482
Bse8I	GATNNNNATC	1 cut(s)	1058
BseCI	ATCGAT	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	114, 973
BseGI	GGATG	6 cut(s)	213, 651, 907, 950, 1023, 1059
BseJI	GATNNNNATC	1 cut(s)	1058
BseLI	CCNNNNNNNGG	1 cut(s)	817
BseMI	GCAATG	1 cut(s)	482
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	1 cut(s)	1124
BseRI	GAGGAG	1 cut(s)	575
BseSI	GKGCMC	3 cut(s)	340, 733, 1072
BseXI	GCAGC	5 cut(s)	386, 639, 766, 916, 1129
BsgI	GTGCAG	2 cut(s)	1074, 1096
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	4 cut(s)	162, 383, 721, 1133
BshNI	GGYRCC	1 cut(s)	51
BshVI	ATCGAT	1 cut(s)	202
BsiHKAI	GWGCWC	2 cut(s)	733, 1072
BsiSI	CCGG	2 cut(s)	443, 579
BslI	CCNNNNNNNGG	1 cut(s)	817
BsmAI	GTCTC	3 cut(s)	11, 587, 599
BsmBI	CGTCTC	1 cut(s)	11
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	4 cut(s)	162, 383, 721, 1133
Bso31I	GGTCTC	1 cut(s)	587
Bsp119I	TTCGAA	1 cut(s)	558
Bsp1286I	GDGCHC	3 cut(s)	340, 733, 1072
Bsp143I	GATC	2 cut(s)	753, 849
BspACI	CCGC	2 cut(s)	713, 718
BspANI	GGCC	4 cut(s)	162, 383, 721, 1133
BspCNI	CTCAG	1 cut(s)	763
BspDI	ATCGAT	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	227
BspHI	TCATGA	1 cut(s)	750
BspLI	GGNNCC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	558
BspT107I	GGYRCC	1 cut(s)	51
BspTI	CTTAAG	1 cut(s)	496
BspTNI	GGTCTC	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	482
BsrFI	RCCGGY	1 cut(s)	442
BsrI	ACTGG	1 cut(s)	1124
BssAI	RCCGGY	1 cut(s)	442
BssECI	CCNNGG	2 cut(s)	114, 973
BssMI	GATC	2 cut(s)	753, 849
BssSI	CACGAG	1 cut(s)	170
BssT1I	CCWWGG	2 cut(s)	114, 973
Bst2BI	CACGAG	1 cut(s)	170
Bst4CI	ACNGT	2 cut(s)	51, 799
BstAFI	CTTAAG	1 cut(s)	496
BstAPI	GCANNNNNTGC	1 cut(s)	1106
BstBAI	YACGTR	1 cut(s)	430
BstBI	TTCGAA	1 cut(s)	558
BstC8I	GCNNGC	4 cut(s)	33, 513, 882, 1111
BstDEI	CTNAG	2 cut(s)	771, 1191
BstF5I	GGATG	6 cut(s)	213, 651, 907, 950, 1023, 1059
BstFNI	CGCG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	2 cut(s)	756, 852
BstMAI	GTCTC	3 cut(s)	11, 587, 599
BstMBI	GATC	2 cut(s)	753, 849
BstMWI	GCNNNNNNNGC	8 cut(s)	28, 41, 380, 737, 785, 1097, 1106, 1139
BstNSI	RCATGY	2 cut(s)	61, 642
BstSFI	CTRYAG	1 cut(s)	783
BstSLI	GKGCMC	3 cut(s)	340, 733, 1072
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	5 cut(s)	386, 639, 766, 916, 1129
BstXI	CCANNNNNNTGG	1 cut(s)	62
Bsu15I	ATCGAT	1 cut(s)	202
BsuRI	GGCC	4 cut(s)	162, 383, 721, 1133
BsuTUI	ATCGAT	1 cut(s)	202
BtsCI	GGATG	6 cut(s)	213, 651, 907, 950, 1023, 1059
BtsI	GCAGTG	3 cut(s)	108, 682, 875
BtsIMutI	CAGTG	3 cut(s)	108, 682, 875
Cac8I	GCNNGC	4 cut(s)	33, 513, 882, 1111
CaiI	CAGNNNCTG	1 cut(s)	929
CciI	TCATGA	1 cut(s)	750
CfoI	GCGC	1 cut(s)	374
Cfr10I	RCCGGY	1 cut(s)	442
ClaI	ATCGAT	1 cut(s)	202
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	5 cut(s)	52, 229, 687, 824, 917
CviAII	CATG	6 cut(s)	58, 488, 639, 751, 1042, 1135
CviQI	GTAC	5 cut(s)	52, 229, 687, 824, 917
DdeI	CTNAG	2 cut(s)	771, 1191
DpnI	GATC	2 cut(s)	755, 851
DpnII	GATC	2 cut(s)	753, 849
DraIII	CACNNNGTG	1 cut(s)	728
EaeI	YGGCCR	3 cut(s)	160, 381, 719
Eco130I	CCWWGG	2 cut(s)	114, 973
Eco31I	GGTCTC	1 cut(s)	587
Eco32I	GATATC	3 cut(s)	177, 493, 660
EcoRI	GAATTC	1 cut(s)	996
EcoRV	GATATC	3 cut(s)	177, 493, 660
EcoT14I	CCWWGG	2 cut(s)	114, 973
EcoT22I	ATGCAT	1 cut(s)	968
ErhI	CCWWGG	2 cut(s)	114, 973
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	6 cut(s)	61, 491, 642, 754, 1045, 1138
FatI	CATG	6 cut(s)	57, 487, 638, 750, 1041, 1134
FauI	CCCGC	1 cut(s)	706
FauNDI	CATATG	1 cut(s)	72
FbaI	TGATCA	2 cut(s)	753, 849
Fnu4HI	GCNGC	6 cut(s)	375, 628, 719, 780, 930, 1143
FokI	GGATG	6 cut(s)	220, 658, 914, 957, 1010, 1066
Fsp4HI	GCNGC	6 cut(s)	375, 628, 719, 780, 930, 1143
FspBI	CTAG	3 cut(s)	359, 690, 1002
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	6 cut(s)	375, 628, 719, 780, 930, 1143
HaeIII	GGCC	4 cut(s)	162, 383, 721, 1133
HapII	CCGG	2 cut(s)	443, 579
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	6 cut(s)	61, 491, 642, 754, 1045, 1138
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HindIII	AAGCTT	2 cut(s)	499, 509
HinfI	GANTC	4 cut(s)	217, 255, 303, 906
HpaII	CCGG	2 cut(s)	443, 579
HphI	GGTGA	1 cut(s)	1183
Hpy166II	GTNNAC	3 cut(s)	731, 917, 1070
Hpy188I	TCNGA	4 cut(s)	772, 854, 892, 1158
Hpy188III	TCNNGA	3 cut(s)	300, 751, 1127
Hpy8I	GTNNAC	3 cut(s)	731, 917, 1070
HpyAV	CCTTC	2 cut(s)	248, 1037
HpyCH4III	ACNGT	2 cut(s)	51, 799
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	9 cut(s)	76, 450, 487, 731, 884, 966, 1070, 1091, 1113
HpyF10VI	GCNNNNNNNGC	8 cut(s)	28, 41, 380, 737, 785, 1097, 1106, 1139
HpyF3I	CTNAG	2 cut(s)	771, 1191
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	6 cut(s)	61, 491, 642, 754, 1045, 1138
HspAI	GCGC	1 cut(s)	372
KpnI	GGTACC	1 cut(s)	55
Ksp22I	TGATCA	2 cut(s)	753, 849
Kzo9I	GATC	2 cut(s)	753, 849
Lsp1109I	GCAGC	5 cut(s)	386, 639, 766, 916, 1129
LweI	GCATC	3 cut(s)	201, 861, 1132
MaeI	CTAG	3 cut(s)	359, 690, 1002
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	2 cut(s)	425, 1084
MalI	GATC	2 cut(s)	755, 851
MboI	GATC	2 cut(s)	753, 849
MboII	GAAGA	1 cut(s)	308
MhlI	GDGCHC	3 cut(s)	340, 733, 1072
MlsI	TGGCCA	2 cut(s)	162, 383
MluCI	AATT	3 cut(s)	350, 704, 996
MluNI	TGGCCA	2 cut(s)	162, 383
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	2 cut(s)	204, 623
MnlI	CCTC	9 cut(s)	74, 245, 257, 472, 596, 766, 929, 1031, 1123
Mox20I	TGGCCA	2 cut(s)	162, 383
Mph1103I	ATGCAT	1 cut(s)	968
MscI	TGGCCA	2 cut(s)	162, 383
MseI	TTAA	3 cut(s)	405, 497, 633
Msp20I	TGGCCA	2 cut(s)	162, 383
MspCI	CTTAAG	1 cut(s)	496
MspI	CCGG	2 cut(s)	443, 579
Mva1269I	GAATGC	1 cut(s)	108
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	8 cut(s)	28, 41, 380, 737, 785, 1097, 1106, 1139
NdeI	CATATG	1 cut(s)	72
NdeII	GATC	2 cut(s)	753, 849
NlaIII	CATG	6 cut(s)	61, 491, 642, 754, 1045, 1138
NlaIV	GGNNCC	1 cut(s)	53
NmeAIII	GCCGAG	1 cut(s)	240
NsiI	ATGCAT	1 cut(s)	968
NspI	RCATGY	2 cut(s)	61, 642
NspV	TTCGAA	1 cut(s)	558
PagI	TCATGA	1 cut(s)	750
PciI	ACATGT	1 cut(s)	638
PctI	GAATGC	1 cut(s)	108
PfeI	GAWTC	3 cut(s)	255, 303, 906
PkrI	GCNGC	6 cut(s)	376, 629, 720, 781, 931, 1144
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
Ppu21I	YACGTR	1 cut(s)	430
PscI	ACATGT	1 cut(s)	638
PsiI	TTATAA	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	53
PstNI	CAGNNNCTG	1 cut(s)	929
RsaI	GTAC	5 cut(s)	53, 230, 688, 825, 918
RsaNI	GTAC	5 cut(s)	52, 229, 687, 824, 917
SaqAI	TTAA	3 cut(s)	405, 497, 633
SatI	GCNGC	6 cut(s)	375, 628, 719, 780, 930, 1143
Sau3AI	GATC	2 cut(s)	753, 849
ScaI	AGTACT	2 cut(s)	688, 825
SchI	GAGTC	1 cut(s)	226
SduI	GDGCHC	3 cut(s)	340, 733, 1072
SfaNI	GCATC	3 cut(s)	201, 861, 1132
SfcI	CTRYAG	1 cut(s)	783
SfuI	TTCGAA	1 cut(s)	558
SmlI	CTYRAG	2 cut(s)	496, 602
SmoI	CTYRAG	2 cut(s)	496, 602
Sse9I	AATT	3 cut(s)	350, 704, 996
SsiI	CCGC	2 cut(s)	713, 718
SspI	AATATT	1 cut(s)	548
SspMI	CTAG	3 cut(s)	359, 690, 1002
StyI	CCWWGG	2 cut(s)	114, 973
TaaI	ACNGT	2 cut(s)	51, 799
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	2 cut(s)	202, 558
TasI	AATT	3 cut(s)	350, 704, 996
TatI	WGTACW	3 cut(s)	686, 823, 916
TauI	GCSGC	1 cut(s)	721
TfiI	GAWTC	3 cut(s)	255, 303, 906
Tru1I	TTAA	3 cut(s)	405, 497, 633
Tru9I	TTAA	3 cut(s)	405, 497, 633
TscAI	CASTG	3 cut(s)	108, 682, 882
TseI	GCWGC	5 cut(s)	374, 627, 779, 929, 1142
TspDTI	ATGAA	6 cut(s)	59, 717, 858, 1012, 1019, 1151
TspRI	CASTG	3 cut(s)	108, 682, 882
Vha464I	CTTAAG	1 cut(s)	496
VneI	GTGCAC	2 cut(s)	729, 1068
XapI	RAATTY	2 cut(s)	350, 996
XceI	RCATGY	2 cut(s)	61, 642
XspI	CTAG	3 cut(s)	359, 690, 1002
ZrmI	AGTACT	2 cut(s)	688, 825
Zsp2I	ATGCAT	1 cut(s)	968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.