Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008641

Physical Location & Seq

Genomic Coordinates Reverse (-)

2257069 .. 2257467

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1031700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGGAAGTGCATTAGAAACCCTAATTGGGCAAGCCTATGGAGCCAAACAGTACCACATGCTTGGACTCCACATGCAAAGAGCAATGCAAACATTATTAGCAGTAAGCATTCCCTTAGCTCTCATCTGGTTTTACACAAGCACCATTCTCATGGCTCCTGGCCAAAACCACGAGATGTCCGCCGAAGCAGGAACCTTCAACAGGTGGATAATTCCGAGCCTGTTCGCCTTCAGCCTCCTCCAATGCCTCAACAGATTTTTTACAGACGCAAAACAATGTGTTTCCAATGATGATCAGCTCTGGAGTCACAGCTTTTCTTCACGTGTTTGTTGGACCCTGTGTTTTAAATTTGGACTAGGAAACAATGGTGCGGCGTTGGCAATTAGCATTTCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0008150 GO:0015238 GO:0015691 GO:0015893 GO:0016020 GO:0022857 GO:0030001 GO:0042221 GO:0042493 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0071944 GO:0072511

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

133

Amino Acids

14.66

Weight (kDa)

7.72

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	1 - 90	4.5e-17	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34360 AT2G34360
fragaria_vesca	FvH4_4g26340 FvH4_4g26340 FvH4_4g26340
malus_domestica	MD13G1031700.v1.1 MD16G1033800.v1.1
prunus_persica	Prupe.1G320500_v2.0.a1 Prupe.1G320500_v2.0.a1 Prupe.1G320500_v2.0.a1
pyrus_communis	pycom11g08400
rosa_chinensis	RchiOBHm_Chr4g0433921
rosa_laevigata	RLG00000006717
rosa_multiflora	Rmu_co8309941.1_g000001 Rmu_sc0000352.1_g000013
rosa_roxburghii	Rroxscaffold_5G00375340
rosa_rugosa	Rorug04G0272200 Rorug04G0272300
rosa_samantha	Rh4AG327300 Rh4BG334600 Rh4CG350400 Rh4DG331500
rosa_wichuraiana	Rw4G028370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	180, 371
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	1 cut(s)	347
AcuI	CTGAAG	1 cut(s)	214
AcvI	CACGTG	1 cut(s)	323
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	27, 201
AflIII	ACRYGT	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	157
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	3 cut(s)	119, 298, 312
AluI	AGCT	3 cut(s)	119, 298, 312
AoxI	GGCC	1 cut(s)	160
ApoI	RAATTY	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	333
AsuII	TTCGAA	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	333
BalI	TGGCCA	1 cut(s)	162
BauI	CACGAG	1 cut(s)	170
BbrPI	CACGTG	1 cut(s)	323
BciT130I	CCWGG	1 cut(s)	159
BclI	TGATCA	1 cut(s)	292
BfaI	CTAG	1 cut(s)	356
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	4 cut(s)	43, 156, 193, 335
BmrFI	CCNGG	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	322
Bpu10I	CCTNAGC	1 cut(s)	115
Bpu14I	TTCGAA	1 cut(s)	392
BsaAI	YACGTR	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 201
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	27, 201
BseMI	GCAATG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	27, 201
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	162
Bsp119I	TTCGAA	1 cut(s)	392
Bsp143I	GATC	1 cut(s)	292
BspACI	CCGC	2 cut(s)	180, 371
BspANI	GGCC	1 cut(s)	162
BspLI	GGNNCC	4 cut(s)	43, 156, 193, 335
BspT104I	TTCGAA	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	90
BssMI	GATC	1 cut(s)	292
BssSI	CACGAG	1 cut(s)	170
Bst2BI	CACGAG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	51
BstBAI	YACGTR	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	115
BstENI	CCTNNNNNAGG	1 cut(s)	199
BstKTI	GATC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 377
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	2 cut(s)	61, 76
BstSCI	CCNGG	1 cut(s)	157
BstXI	CCANNNNNNTGG	2 cut(s)	62, 151
BsuRI	GGCC	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	333
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	3 cut(s)	58, 73, 151
CviJI	RGCY	9 cut(s)	35, 44, 119, 155, 162, 219, 234, 298, 312
CviKI_1	RGCY	9 cut(s)	35, 44, 119, 155, 162, 219, 234, 298, 312
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	115
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
DraI	TTTAAA	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	214
Eco72I	CACGTG	1 cut(s)	323
EcoNI	CCTNNNNNAGG	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	157
FaeI	CATG	3 cut(s)	61, 76, 154
FaiI	YATR	4 cut(s)	39, 59, 74, 152
FatI	CATG	3 cut(s)	57, 72, 150
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	372
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	322
HaeIII	GGCC	1 cut(s)	162
HgaI	GACGC	1 cut(s)	275
Hin1II	CATG	3 cut(s)	61, 76, 154
HinfI	GANTC	2 cut(s)	66, 304
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	1 cut(s)	301
HpyAV	CCTTC	2 cut(s)	205, 238
HpyCH4III	ACNGT	1 cut(s)	51
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	3 cut(s)	11, 76, 88
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 377
HpyF3I	CTNAG	1 cut(s)	115
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	3 cut(s)	61, 76, 154
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	292
LmnI	GCTCC	2 cut(s)	41, 160
LpnPI	CCDG	8 cut(s)	112, 144, 171, 174, 187, 233, 286, 350
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	1 cut(s)	309
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	5 cut(s)	24, 210, 347, 381, 394
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	2 cut(s)	60, 313
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	3 cut(s)	245, 248, 257
Mox20I	TGGCCA	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	149
Msp20I	TGGCCA	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	41, 377
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	3 cut(s)	61, 76, 154
NlaIV	GGNNCC	4 cut(s)	43, 156, 193, 335
NmuCI	GTSAC	1 cut(s)	305
NspI	RCATGY	2 cut(s)	61, 76
NspV	TTCGAA	1 cut(s)	392
PctI	GAATGC	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	373
PleI	GAGTC	2 cut(s)	60, 312
PmaCI	CACGTG	1 cut(s)	323
PmlI	CACGTG	1 cut(s)	323
PpsI	GAGTC	2 cut(s)	60, 312
Ppu21I	YACGTR	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	157
PspCI	CACGTG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	4 cut(s)	43, 156, 193, 335
PspPI	GGNCC	1 cut(s)	333
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	1 cut(s)	333
SchI	GAGTC	2 cut(s)	60, 313
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	6 cut(s)	121, 197, 206, 300, 314, 325
SfuI	TTCGAA	1 cut(s)	392
SinI	GGWCC	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	5 cut(s)	24, 210, 347, 381, 394
SsiI	CCGC	2 cut(s)	180, 371
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	51
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	1 cut(s)	392
TasI	AATT	5 cut(s)	24, 210, 347, 381, 394
TauI	GCSGC	1 cut(s)	374
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TseFI	GTSAC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	333
XagI	CCTNNNNNAGG	1 cut(s)	199
XapI	RAATTY	1 cut(s)	347
XceI	RCATGY	2 cut(s)	61, 76
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.