MD16G1033800.v1.1

MATE efflux family protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
2433235 .. 2436107
2873 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1033800.v1.1.491

Sequence Viewer

Length: 1476 bp
ATGGCAGAAGTGAGCTCGAGTGTTAAGACTCCTCTAATTCCAGATCATCGAGAATTTGATGGTGAAACAATACCATCTCAAAGAGGAATTTGGAGAGGTGGGGATGTTATTGAAGAAGCAAAATTGCAGCTATGGCTGGCAGGGCCTCTGATTGCAGTGAGCTTGTTGCAGTACAGCTTACAAGTCACATCTGTCATGTTCGTTGGCCATCTTGGAGAGTTGGCACTCTCCAGTGCTTCCATGGCCTCTTCATTTGCTTCTGTCACTGGTTTCAGTGTACTGCTGGGAATGGGAAGTGCATTAGAAACCCTATGTGGACAAGCCTACGGAGCCAAACAGTACCACATGCTTGGAGTCCACATGCAAAGAGCAATGCTTACACTATTAGCAGTAAGCATCCCCTTAGCAGTCATCTGGTTCTACACAAGCACCATTCTCATGGCTCTTGGCCAAGACCATGAGATATCTGCGGAGGCAGGAACCTTTAACCGCTGGATGATTCCGAGCCTGTTTGCCTATAGTCTCCTCCAATGCCTCAACAGATTTTTACAGACACAAAACAATGTGTTTCCAATGATGATCAGCTCTGGAGTCACAGCTCTTCTTCACATTGTGGTCTGTTGGGCACTTTGTTTTAAATTCGGACTGGGAAACAAAGGCGCAGCATTGGCAATTTGCATTTCGAATTGGGTTAATGTGGTGTTACTGGCATGTTACGTGCAGTTCTCGTCCGCCTGCAAGAACACTTGGACTGGATTTTCAGAAGAAGCCTTGAATGATATTGTCAGTTTTGTCAAACTTGCGATTTCATCAGCTATAATGATATGCTTCGAATATTGGTCTTTCGAAATGGTTGTTCTCTTGTCTGGTCTTCTCCCGAACCCAAAACTGGAAACATCCGTATTATCGATAAGCCTTAACACATGTTGGATGGTTTATATGATCTCAGTTGGTCTCGGCAGTGCTATAAGCACCAGAGTGTCGAATGAATTGGGAGCAGGACGGCCGCAAGGCGCGCAATTAGCTCTACGAGTCATGACTGCAATGGCTTTGTTAGAGGGTGCTGGAATCGCAACAGCAACGGTTTTGGTACGCTTTGTTTGGGGAAAGCTCTACAGCAATGAGAATGAAGTGATTGTATATGTTGCTAGAATGATGCCACTGCTTGCACTTTCCGACTTCTTGGATGGATTCCAATGTGTGCTTTCAGGGGCTGCCAGAGGGTGTGGATGGCAAAATCTTTGTGTAGTCATAAACCTTGGTGCTTACTATGTTGTCGGAATTCCTACTGCTGTGCTTTTTGCTTTCTTCCTCCATATTGGAGGCATGGGGCTTTGGATGGGGATCATTTGTGGGCTTCTTGTTCAAGTCACAGCACTTGTTGCAGTAAATTTGTGCACTGATTGGCATGAAGAGGCAACGAAAGCTGCGAATAGTGTCCAAAGTACTGTCTTAGCCATCGACAAGGCAACATAG

Protein Analysis

492

Amino Acids

52.95

Weight (kDa)

5.77

Isoelectric Point (pI)

28.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 49 - 208 1.7e-38 MatE
MatE PF01554 271 - 432 5.8e-27 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1016
AciI CCGC 4 cut(s) 470, 490, 732, 1007
AclWI GGATC 1 cut(s) 1352
AcoI YGGCCR 3 cut(s) 205, 448, 1004
AcsI RAATTY 5 cut(s) 53, 87, 638, 1281, 1390
AdeI CACNNNGTG 1 cut(s) 613
AfaI GTAC 5 cut(s) 173, 279, 341, 1092, 1447
AfiI CCNNNNNNNGG 1 cut(s) 889
AflIII ACRYGT 1 cut(s) 923
AgsI TTSAA 3 cut(s) 113, 775, 1367
AleI CACNNNNGTG 1 cut(s) 977
Alw21I GWGCWC 2 cut(s) 17, 1400
Alw26I GTCTC 2 cut(s) 527, 959
Alw44I GTGCAC 1 cut(s) 1396
AlwI GGATC 1 cut(s) 1352
AlwNI CAGNNNCTG 1 cut(s) 1214
Ama87I CYCGRG 1 cut(s) 16
AoxI GGCC 5 cut(s) 143, 205, 243, 448, 1004
ApaLI GTGCAC 1 cut(s) 1396
ApeKI GCWGC 4 cut(s) 127, 662, 1214, 1427
ApoI RAATTY 5 cut(s) 53, 87, 638, 1281, 1390
AspLEI GCGC 3 cut(s) 662, 1016, 1018
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 74
AsuII TTCGAA 3 cut(s) 683, 831, 846
AvaI CYCGRG 1 cut(s) 16
BaeGI GKGCMC 2 cut(s) 628, 1400
BalI TGGCCA 2 cut(s) 207, 450
BanII GRGCYC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 863
Bbv12I GWGCWC 2 cut(s) 17, 1400
BbvI GCAGC 4 cut(s) 139, 674, 1201, 1414
BccI CCATC 8 cut(s) 53, 82, 216, 925, 1181, 1224, 1333, 1466
BceAI ACGGC 1 cut(s) 1019
BclI TGATCA 1 cut(s) 579
BcoDI GTCTC 2 cut(s) 527, 959
BfaI CTAG 1 cut(s) 1149
BfmI CTRYAG 2 cut(s) 517, 1114
BisI GCNGC 5 cut(s) 128, 663, 1007, 1215, 1428
BlsI GCNGC 5 cut(s) 129, 664, 1008, 1216, 1429
BmcAI AGTACT 1 cut(s) 1447
BmeT110I CYCGRG 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 2 cut(s) 331, 481
BmrI ACTGGG 1 cut(s) 656
BmsI GCATC 2 cut(s) 405, 1146
BmuI ACTGGG 1 cut(s) 656
BpiI GAAGAC 1 cut(s) 863
BpmI CTGGAG 2 cut(s) 214, 609
Bpu10I CCTNAGC 1 cut(s) 403
Bpu14I TTCGAA 3 cut(s) 683, 831, 846
Bsa29I ATCGAT 1 cut(s) 908
BsaAI YACGTR 1 cut(s) 718
BsaBI GATNNNNATC 1 cut(s) 1343
BsaI GGTCTC 1 cut(s) 959
BsaJI CCNNGG 2 cut(s) 240, 1258
Bsc4I CCNNNNNNNGG 1 cut(s) 889
Bse1I ACTGG 6 cut(s) 231, 271, 651, 711, 757, 894
Bse3DI GCAATG 3 cut(s) 378, 1050, 1126
Bse8I GATNNNNATC 1 cut(s) 1343
BseCI ATCGAT 1 cut(s) 908
BseDI CCNNGG 2 cut(s) 240, 1258
BseGI GGATG 8 cut(s) 109, 396, 501, 896, 936, 1192, 1235, 1344
BseJI GATNNNNATC 1 cut(s) 1343
BseLI CCNNNNNNNGG 1 cut(s) 889
BseMI GCAATG 3 cut(s) 378, 1050, 1126
BseMII CTCAG 1 cut(s) 960
BseNI ACTGG 6 cut(s) 231, 271, 651, 711, 757, 894
BsePI GCGCGC 1 cut(s) 1014
BseRI GAGGAG 2 cut(s) 21, 515
BseSI GKGCMC 2 cut(s) 628, 1400
BseX3I CGGCCG 1 cut(s) 1004
BseXI GCAGC 4 cut(s) 139, 674, 1201, 1414
BseYI CCCAGC 1 cut(s) 283
BsgI GTGCAG 1 cut(s) 740
Bsh1236I CGCG 1 cut(s) 1016
Bsh1285I CGRYCG 1 cut(s) 1007
BshFI GGCC 5 cut(s) 145, 207, 245, 450, 1006
BshVI ATCGAT 1 cut(s) 908
BsiEI CGRYCG 1 cut(s) 1007
BsiHKAI GWGCWC 2 cut(s) 17, 1400
BsiHKCI CYCGRG 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 889
BsmAI GTCTC 2 cut(s) 527, 959
BsnI GGCC 5 cut(s) 145, 207, 245, 450, 1006
Bso31I GGTCTC 1 cut(s) 959
BsoBI CYCGRG 1 cut(s) 16
Bsp119I TTCGAA 3 cut(s) 683, 831, 846
Bsp1286I GDGCHC 3 cut(s) 17, 628, 1400
Bsp143I GATC 4 cut(s) 43, 579, 942, 1344
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 4 cut(s) 470, 490, 732, 1007
BspANI GGCC 5 cut(s) 145, 207, 245, 450, 1006
BspCNI CTCAG 1 cut(s) 959
BspDI ATCGAT 1 cut(s) 908
BspFNI CGCG 1 cut(s) 1016
BspHI TCATGA 1 cut(s) 1035
BspLI GGNNCC 2 cut(s) 331, 481
BspPI GGATC 1 cut(s) 1352
BspQI GCTCTTC 1 cut(s) 606
BspT104I TTCGAA 3 cut(s) 683, 831, 846
BspTNI GGTCTC 1 cut(s) 959
BsrDI GCAATG 3 cut(s) 378, 1050, 1126
BsrI ACTGG 6 cut(s) 231, 271, 651, 711, 757, 894
BssECI CCNNGG 2 cut(s) 240, 1258
BssHII GCGCGC 1 cut(s) 1014
BssMI GATC 4 cut(s) 43, 579, 942, 1344
BssT1I CCWWGG 2 cut(s) 240, 1258
Bst4CI ACNGT 3 cut(s) 339, 1084, 1450
Bst6I CTCTTC 3 cut(s) 253, 606, 1407
BstAPI GCANNNNNTGC 1 cut(s) 1382
BstBAI YACGTR 1 cut(s) 718
BstBI TTCGAA 3 cut(s) 683, 831, 846
BstC8I GCNNGC 4 cut(s) 138, 736, 1016, 1167
BstDEI CTNAG 3 cut(s) 403, 946, 1453
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 8 cut(s) 109, 396, 501, 896, 936, 1192, 1235, 1344
BstFNI CGCG 1 cut(s) 1016
BstHHI GCGC 3 cut(s) 662, 1016, 1018
BstKTI GATC 4 cut(s) 46, 582, 945, 1347
BstMAI GTCTC 2 cut(s) 527, 959
BstMBI GATC 4 cut(s) 43, 579, 942, 1344
BstMCI CGRYCG 1 cut(s) 1007
BstNSI RCATGY 4 cut(s) 349, 364, 714, 927
BstSFI CTRYAG 2 cut(s) 517, 1114
BstSLI GKGCMC 2 cut(s) 628, 1400
BstUI CGCG 1 cut(s) 1016
BstV1I GCAGC 4 cut(s) 139, 674, 1201, 1414
BstV2I GAAGAC 1 cut(s) 863
BstXI CCANNNNNNTGG 2 cut(s) 350, 439
BstZI CGGCCG 1 cut(s) 1004
Bsu15I ATCGAT 1 cut(s) 908
BsuRI GGCC 5 cut(s) 145, 207, 245, 450, 1006
BsuTUI ATCGAT 1 cut(s) 908
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 8 cut(s) 109, 396, 501, 896, 936, 1192, 1235, 1344
BtsI GCAGTG 3 cut(s) 162, 967, 1160
BtsIMutI CAGTG 7 cut(s) 162, 238, 264, 280, 967, 1160, 1398
Cac8I GCNNGC 4 cut(s) 138, 736, 1016, 1167
CaiI CAGNNNCTG 1 cut(s) 1214
CciI TCATGA 1 cut(s) 1035
CfoI GCGC 3 cut(s) 662, 1016, 1018
Cfr13I GGNCC 1 cut(s) 143
ClaI ATCGAT 1 cut(s) 908
Csp6I GTAC 5 cut(s) 172, 278, 340, 1091, 1446
CviQI GTAC 5 cut(s) 172, 278, 340, 1091, 1446
DdeI CTNAG 3 cut(s) 403, 946, 1453
DpnI GATC 4 cut(s) 45, 581, 944, 1346
DpnII GATC 4 cut(s) 43, 579, 942, 1344
DraI TTTAAA 1 cut(s) 637
DraIII CACNNNGTG 1 cut(s) 613
EaeI YGGCCR 3 cut(s) 205, 448, 1004
EagI CGGCCG 1 cut(s) 1004
Eam1104I CTCTTC 3 cut(s) 253, 606, 1407
EarI CTCTTC 3 cut(s) 253, 606, 1407
EciI GGCGGA 1 cut(s) 721
Ecl136II GAGCTC 1 cut(s) 15
EclXI CGGCCG 1 cut(s) 1004
Eco130I CCWWGG 2 cut(s) 240, 1258
Eco24I GRGCYC 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 959
Eco32I GATATC 1 cut(s) 465
Eco52I CGGCCG 1 cut(s) 1004
Eco53kI GAGCTC 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 15
EcoO109I RGGNCCY 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 1281
EcoRV GATATC 1 cut(s) 465
EcoT14I CCWWGG 2 cut(s) 240, 1258
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 2 cut(s) 240, 1258
FbaI TGATCA 1 cut(s) 579
Fnu4HI GCNGC 5 cut(s) 128, 663, 1007, 1215, 1428
FokI GGATG 8 cut(s) 116, 383, 508, 883, 943, 1199, 1242, 1351
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 5 cut(s) 128, 663, 1007, 1215, 1428
FspBI CTAG 1 cut(s) 1149
GlaI GCGC 3 cut(s) 661, 1015, 1017
GluI GCNGC 5 cut(s) 128, 663, 1007, 1215, 1428
GsaI CCCAGC 1 cut(s) 287
GsuI CTGGAG 2 cut(s) 214, 609
HaeIII GGCC 5 cut(s) 145, 207, 245, 450, 1006
HhaI GCGC 3 cut(s) 662, 1016, 1018
Hin6I GCGC 3 cut(s) 660, 1014, 1016
HinP1I GCGC 3 cut(s) 660, 1014, 1016
HinfI GANTC 7 cut(s) 28, 354, 499, 591, 1032, 1068, 1191
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 4 cut(s) 278, 317, 358, 1398
Hpy188I TCNGA 6 cut(s) 150, 504, 644, 763, 1177, 1280
Hpy188III TCNNGA 5 cut(s) 41, 50, 588, 877, 1036
Hpy8I GTNNAC 4 cut(s) 278, 317, 358, 1398
HpyCH4III ACNGT 3 cut(s) 339, 1084, 1450
HpyCH4IV ACGT 1 cut(s) 717
HpyF3I CTNAG 3 cut(s) 403, 946, 1453
HpySE526I ACGT 1 cut(s) 717
HspAI GCGC 3 cut(s) 660, 1014, 1016
Ksp22I TGATCA 1 cut(s) 579
Kzo9I GATC 4 cut(s) 43, 579, 942, 1344
LguI GCTCTTC 1 cut(s) 606
LmnI GCTCC 2 cut(s) 329, 995
Lsp1109I GCAGC 4 cut(s) 139, 674, 1201, 1414
LweI GCATC 2 cut(s) 405, 1146
MaeI CTAG 1 cut(s) 1149
MaeII ACGT 1 cut(s) 717
MaeIII GTNAC 6 cut(s) 184, 262, 592, 702, 713, 1369
MalI GATC 4 cut(s) 45, 581, 944, 1346
MboI GATC 4 cut(s) 43, 579, 942, 1344
MboII GAAGA 8 cut(s) 125, 240, 593, 596, 776, 863, 1300, 1424
MhlI GDGCHC 3 cut(s) 17, 628, 1400
MlsI TGGCCA 2 cut(s) 207, 450
MluNI TGGCCA 2 cut(s) 207, 450
MlyI GAGTC 4 cut(s) 22, 363, 600, 1041
MmeI TCCRAC 3 cut(s) 908, 1200, 1258
Mox20I TGGCCA 2 cut(s) 207, 450
MscI TGGCCA 2 cut(s) 207, 450
MseI TTAA 5 cut(s) 24, 486, 636, 693, 918
MslI CAYNNNNRTG 2 cut(s) 437, 977
Msp20I TGGCCA 2 cut(s) 207, 450
MspA1I CMGCKG 1 cut(s) 492
MvnI CGCG 1 cut(s) 1016
NcoI CCATGG 1 cut(s) 240
NdeII GATC 4 cut(s) 43, 579, 942, 1344
NlaIV GGNNCC 2 cut(s) 331, 481
NmeAIII GCCGAG 1 cut(s) 936
NmuCI GTSAC 4 cut(s) 184, 262, 592, 1369
NspI RCATGY 4 cut(s) 349, 364, 714, 927
NspV TTCGAA 3 cut(s) 683, 831, 846
OliI CACNNNNGTG 1 cut(s) 977
PaeR7I CTCGAG 1 cut(s) 16
PagI TCATGA 1 cut(s) 1035
PauI GCGCGC 1 cut(s) 1014
PciI ACATGT 1 cut(s) 923
PciSI GCTCTTC 1 cut(s) 606
PcsI WCGNNNNNNNCGW 1 cut(s) 1427
PfeI GAWTC 3 cut(s) 499, 1068, 1191
PkrI GCNGC 5 cut(s) 129, 664, 1008, 1216, 1429
PleI GAGTC 4 cut(s) 22, 362, 599, 1040
PpsI GAGTC 4 cut(s) 22, 362, 599, 1040
Ppu21I YACGTR 1 cut(s) 718
PscI ACATGT 1 cut(s) 923
Psp124BI GAGCTC 1 cut(s) 17
PspFI CCCAGC 1 cut(s) 283
PspN4I GGNNCC 2 cut(s) 331, 481
PspPI GGNCC 1 cut(s) 143
PspXI VCTCGAGB 1 cut(s) 16
PstNI CAGNNNCTG 1 cut(s) 1214
PteI GCGCGC 1 cut(s) 1014
RsaI GTAC 5 cut(s) 173, 279, 341, 1092, 1447
RsaNI GTAC 5 cut(s) 172, 278, 340, 1091, 1446
RseI CAYNNNNRTG 2 cut(s) 437, 977
SacI GAGCTC 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 606
SaqAI TTAA 5 cut(s) 24, 486, 636, 693, 918
SatI GCNGC 5 cut(s) 128, 663, 1007, 1215, 1428
Sau3AI GATC 4 cut(s) 43, 579, 942, 1344
Sau96I GGNCC 1 cut(s) 143
ScaI AGTACT 1 cut(s) 1447
SchI GAGTC 4 cut(s) 22, 363, 600, 1041
SduI GDGCHC 3 cut(s) 17, 628, 1400
SfaNI GCATC 2 cut(s) 405, 1146
SfcI CTRYAG 2 cut(s) 517, 1114
Sfr274I CTCGAG 1 cut(s) 16
SfuI TTCGAA 3 cut(s) 683, 831, 846
SlaI CTCGAG 1 cut(s) 16
SmiMI CAYNNNNRTG 2 cut(s) 437, 977
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
SsiI CCGC 4 cut(s) 470, 490, 732, 1007
SspI AATATT 1 cut(s) 836
SspMI CTAG 1 cut(s) 1149
SstI GAGCTC 1 cut(s) 17
StyI CCWWGG 2 cut(s) 240, 1258
TaaI ACNGT 3 cut(s) 339, 1084, 1450
TaiI ACGT 1 cut(s) 720
TaqI TCGA 8 cut(s) 17, 49, 683, 831, 846, 908, 983, 1461
TatI WGTACW 3 cut(s) 171, 277, 1445
TauI GCSGC 1 cut(s) 1009
TfiI GAWTC 3 cut(s) 499, 1068, 1191
Tru1I TTAA 5 cut(s) 24, 486, 636, 693, 918
Tru9I TTAA 5 cut(s) 24, 486, 636, 693, 918
TscAI CASTG 7 cut(s) 162, 238, 271, 280, 967, 1167, 1405
TseFI GTSAC 4 cut(s) 184, 262, 592, 1369
TseI GCWGC 4 cut(s) 127, 662, 1214, 1427
Tsp45I GTSAC 4 cut(s) 184, 262, 592, 1369
TspDTI ATGAA 5 cut(s) 240, 798, 1002, 1143, 1425
TspGWI ACGGA 2 cut(s) 342, 889
TspRI CASTG 7 cut(s) 162, 238, 271, 280, 967, 1167, 1405
VneI GTGCAC 1 cut(s) 1396
XapI RAATTY 5 cut(s) 53, 87, 638, 1281, 1390
XceI RCATGY 4 cut(s) 349, 364, 714, 927
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XhoI CTCGAG 1 cut(s) 16
XspI CTAG 1 cut(s) 1149
ZrmI AGTACT 1 cut(s) 1447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.