RchiOBHm_Chr4g0433921

MATE efflux family protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
57881383 .. 57883649
2267 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40239

Sequence Viewer

Length: 1443 bp
ATGGCAGAAGTGAGTTCAAGTCTTAAGAATCCTCTGGTTCAAAATCAAGAGAGAAACTATGGAATTGATGCCGAAACATCCCAGCAAGGATTTGGTAGAGATGATGTTATTGAAGAAGCTAAGAAGCAACTATGGCTAGCAGGGCCTCTTATTGCAGTAAGTTTGATGCAGTGTAGCTTACAAATCACGTCAATCATGTACGTCGGCCATCTCGGAGAGCTTCCGCTTTCCGGTGCTTCTTTGGGCTCTTCGTTTGCTTCGGTCACTGGATACAGTATCTTGTTGGGAATGGGAAGTGCGTTAGAGACGCTATGTGGGCAAGCCTATGGGGCTAAACGGTACCACATGCTTGGAGTTCATATGCAACGAGGAATACTAACATTGTTAGCAGTGAGCATTCCCTTGGCACTCATTTGGTTCTACACAAGCACCATTCTTATTGCGTTTGGCCAAGACCACGAGATATCCAACGAAGCAGGAACTTTCAATAGATGGATGATGCCGAGTCTTTTCGCGTACAGCCTCCTTCAATGCCTCAATAGATTCTTACAGACACAAAACAATGTGTTTCCAATGATGATAAGCTCTGGAATCACAGCTTTTCTTCACATTATAATCTGTTGGGCACTTTGTTTCAAATTTGGACTAGGAAGCAAAGGCGCAGCATTGGCCATTAGCATTTCCTATTGGGTTAATGTGTTGTTATTGGCAAGTTATGTGATGTTCTCGCCGGTCTGCAAGAACACTTGGACAGGATTTACGAAAGAGGCATTGCATGATATCTTAAGCTTTATCAAGCTTGCCATTCCATCAGCTATAATGATATGTTTTGAATATTGGACATTCGAAATGGTTGTTCTCTTGTCCGGTCTCCTCCCAAATCCAAAACTTGAAACATCTGTGTTATCTATAAGCCTTAACACATGTTGGATGGTCTATATGATATCAGTTGGTCTTGGCAGTGCTATAAGTACAAGAGTGTCAAATGAATTAGGTGCCGGGCGGCCACAAAGTGCACGATTAGCTCTACAAGTCATGGTCACAGTGGCTTTATCCGAGGGTGCTGCTATAGCAATAGCCACAGTATTGGTTCGCCGTGTTTGGGGAGTACTATACAGCAACGAGAATGAAGTGATCAGATATGTTGCTGAAATGATGCCACTGCTTGCACTATCTGACTTCTTGGATGGATTCCAATGTGTACTTTCAGGGGCTGCCAGAGGGTGTGGATGGCAAAATCTTTGTGTATGCATAAACCTTGGGGCTTACTACGTTGTGGGAATTCCTAGTGCCGTGCTTTTTGCTTTCATCCTTCATATTGGAGGCATGGGGCTTTGGATGGGTATCATTTGTGCACTTTTTGTTCAAGTTACTGCACTTGTTGCAGTAAATGCCTGCACCGACTGGCATCAAGAGGTAAATTTGAGTCAAACTTATAACTGA

Protein Analysis

480

Amino Acids

52.32

Weight (kDa)

6.07

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 49 - 208 3e-38 MatE
MatE PF01554 270 - 432 3.7e-28 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 614, 1437
Acc65I GGTACC 1 cut(s) 339
AccB1I GGYRCC 2 cut(s) 339, 995
AccII CGCG 1 cut(s) 515
AciI CCGC 2 cut(s) 224, 1003
AcoI YGGCCR 4 cut(s) 205, 448, 669, 1004
AcsI RAATTY 3 cut(s) 638, 1281, 1420
AdeI CACNNNGTG 1 cut(s) 1013
AfaI GTAC 6 cut(s) 200, 341, 518, 973, 1110, 1203
AfiI CCNNNNNNNGG 2 cut(s) 230, 1102
AflII CTTAAG 2 cut(s) 23, 784
AflIII ACRYGT 1 cut(s) 923
AgsI TTSAA 9 cut(s) 18, 41, 113, 487, 530, 637, 833, 893, 1367
AjiI CACGTC 1 cut(s) 189
AluBI AGCT 9 cut(s) 119, 177, 220, 585, 599, 789, 799, 815, 1025
AluI AGCT 9 cut(s) 119, 177, 220, 585, 599, 789, 799, 815, 1025
Alw21I GWGCWC 2 cut(s) 1018, 1357
Alw26I GTCTC 2 cut(s) 299, 875
Alw44I GTGCAC 2 cut(s) 1014, 1353
AlwNI CAGNNNCTG 1 cut(s) 1214
AoxI GGCC 5 cut(s) 143, 205, 448, 669, 1004
ApaLI GTGCAC 2 cut(s) 1014, 1353
ApeKI GCWGC 3 cut(s) 662, 1064, 1214
ApoI RAATTY 3 cut(s) 638, 1281, 1420
Asp718I GGTACC 1 cut(s) 339
AspLEI GCGC 1 cut(s) 662
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 1 cut(s) 1000
AsuII TTCGAA 1 cut(s) 846
AsuNHI GCTAGC 1 cut(s) 136
BaeGI GKGCMC 3 cut(s) 628, 1018, 1357
BalI TGGCCA 2 cut(s) 450, 671
BanI GGYRCC 2 cut(s) 339, 995
BanII GRGCYC 1 cut(s) 248
BauI CACGAG 1 cut(s) 458
Bbv12I GWGCWC 2 cut(s) 1018, 1357
BbvI GCAGC 3 cut(s) 674, 1051, 1201
BccI CCATC 7 cut(s) 216, 486, 817, 925, 1181, 1224, 1333
BceAI ACGGC 2 cut(s) 1080, 1277
BcgI CGANNNNNNTGC 2 cut(s) 1046, 1080
BciVI GTATCC 1 cut(s) 263
BclI TGATCA 1 cut(s) 1134
BcnI CCSGG 1 cut(s) 1000
BcoDI GTCTC 2 cut(s) 299, 875
BfaI CTAG 3 cut(s) 137, 647, 1287
BfmI CTRYAG 1 cut(s) 1068
BfrI CTTAAG 2 cut(s) 23, 784
BfuI GTATCC 1 cut(s) 263
BglI GCCNNNNNGGC 1 cut(s) 329
BisI GCNGC 4 cut(s) 663, 1004, 1065, 1215
BlsI GCNGC 4 cut(s) 664, 1005, 1066, 1216
BmcAI AGTACT 1 cut(s) 1110
Bme1390I CCNGG 1 cut(s) 1000
BmgBI CACGTC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 2 cut(s) 341, 997
BmrFI CCNGG 1 cut(s) 1000
BmsI GCATC 5 cut(s) 58, 156, 489, 1146, 1417
BmtI GCTAGC 1 cut(s) 140
Bpu14I TTCGAA 1 cut(s) 846
BpuMI CCSGG 1 cut(s) 1000
BsaBI GATNNNNATC 1 cut(s) 1343
BsaI GGTCTC 1 cut(s) 875
BsaJI CCNNGG 3 cut(s) 402, 1056, 1258
BsaWI WCCGGW 2 cut(s) 230, 866
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 1102
Bse118I RCCGGY 1 cut(s) 730
Bse1I ACTGG 2 cut(s) 271, 1409
Bse3DI GCAATG 1 cut(s) 770
Bse8I GATNNNNATC 1 cut(s) 1343
BseDI CCNNGG 3 cut(s) 402, 1056, 1258
BseGI GGATG 7 cut(s) 77, 501, 936, 1192, 1235, 1308, 1344
BseJI GATNNNNATC 1 cut(s) 1343
BseLI CCNNNNNNNGG 2 cut(s) 230, 1102
BseMI GCAATG 1 cut(s) 770
BseNI ACTGG 2 cut(s) 271, 1409
BseRI GAGGAG 1 cut(s) 863
BseSI GKGCMC 3 cut(s) 628, 1018, 1357
BseXI GCAGC 3 cut(s) 674, 1051, 1201
BseYI CCCAGC 1 cut(s) 81
BsgI GTGCAG 2 cut(s) 1359, 1381
Bsh1236I CGCG 1 cut(s) 515
BshFI GGCC 5 cut(s) 145, 207, 450, 671, 1006
BshNI GGYRCC 2 cut(s) 339, 995
BsiHKAI GWGCWC 2 cut(s) 1018, 1357
BsiSI CCGG 4 cut(s) 231, 731, 867, 999
BslI CCNNNNNNNGG 2 cut(s) 230, 1102
BsmAI GTCTC 2 cut(s) 299, 875
BsmBI CGTCTC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 396
BsnI GGCC 5 cut(s) 145, 207, 450, 671, 1006
Bso31I GGTCTC 1 cut(s) 875
Bsp119I TTCGAA 1 cut(s) 846
Bsp1286I GDGCHC 4 cut(s) 248, 628, 1018, 1357
Bsp143I GATC 1 cut(s) 1134
BspACI CCGC 2 cut(s) 224, 1003
BspANI GGCC 5 cut(s) 145, 207, 450, 671, 1006
BspFNI CGCG 1 cut(s) 515
BspLI GGNNCC 2 cut(s) 341, 997
BspOI GCTAGC 1 cut(s) 140
BspQI GCTCTTC 1 cut(s) 253
BspT104I TTCGAA 1 cut(s) 846
BspT107I GGYRCC 2 cut(s) 339, 995
BspTI CTTAAG 2 cut(s) 23, 784
BspTNI GGTCTC 1 cut(s) 875
BsrDI GCAATG 1 cut(s) 770
BsrFI RCCGGY 1 cut(s) 730
BsrI ACTGG 2 cut(s) 271, 1409
BssAI RCCGGY 1 cut(s) 730
BssECI CCNNGG 3 cut(s) 402, 1056, 1258
BssMI GATC 1 cut(s) 1134
BssSI CACGAG 1 cut(s) 458
BssT1I CCWWGG 2 cut(s) 402, 1258
Bst2BI CACGAG 1 cut(s) 458
Bst4CI ACNGT 4 cut(s) 275, 339, 1045, 1084
Bst6I CTCTTC 1 cut(s) 253
BstAFI CTTAAG 2 cut(s) 23, 784
BstAPI GCANNNNNTGC 2 cut(s) 1382, 1391
BstBI TTCGAA 1 cut(s) 846
BstC8I GCNNGC 5 cut(s) 138, 321, 801, 1167, 1396
BstDEI CTNAG 1 cut(s) 120
BstF5I GGATG 7 cut(s) 77, 501, 936, 1192, 1235, 1308, 1344
BstFNI CGCG 1 cut(s) 515
BstHHI GCGC 1 cut(s) 662
BstKTI GATC 1 cut(s) 1137
BstMAI GTCTC 2 cut(s) 299, 875
BstMBI GATC 1 cut(s) 1134
BstMWI GCNNNNNNNGC 9 cut(s) 133, 142, 316, 329, 668, 1022, 1070, 1382, 1391
BstNSI RCATGY 2 cut(s) 349, 927
BstSCI CCNGG 1 cut(s) 998
BstSFI CTRYAG 1 cut(s) 1068
BstSLI GKGCMC 3 cut(s) 628, 1018, 1357
BstUI CGCG 1 cut(s) 515
BstV1I GCAGC 3 cut(s) 674, 1051, 1201
BstXI CCANNNNNNTGG 2 cut(s) 350, 1087
BsuI GTATCC 1 cut(s) 263
BsuRI GGCC 5 cut(s) 145, 207, 450, 671, 1006
BtrI CACGTC 1 cut(s) 189
BtsCI GGATG 7 cut(s) 77, 501, 936, 1192, 1235, 1308, 1344
BtsI GCAGTG 4 cut(s) 176, 396, 967, 1160
BtsIMutI CAGTG 6 cut(s) 176, 264, 396, 967, 1050, 1160
Cac8I GCNNGC 5 cut(s) 138, 321, 801, 1167, 1396
CaiI CAGNNNCTG 1 cut(s) 1214
CfoI GCGC 1 cut(s) 662
Cfr10I RCCGGY 1 cut(s) 730
Cfr13I GGNCC 1 cut(s) 143
CseI GACGC 1 cut(s) 316
Csp6I GTAC 6 cut(s) 199, 340, 517, 972, 1109, 1202
CviAII CATG 6 cut(s) 196, 346, 776, 924, 1036, 1327
CviQI GTAC 6 cut(s) 199, 340, 517, 972, 1109, 1202
DdeI CTNAG 1 cut(s) 120
DpnI GATC 1 cut(s) 1136
DpnII GATC 1 cut(s) 1134
DraIII CACNNNGTG 1 cut(s) 1013
EaeI YGGCCR 4 cut(s) 205, 448, 669, 1004
Eam1104I CTCTTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 253
Eco130I CCWWGG 2 cut(s) 402, 1258
Eco24I GRGCYC 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 875
Eco32I GATATC 3 cut(s) 465, 781, 945
EcoO109I RGGNCCY 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 1281
EcoRV GATATC 3 cut(s) 465, 781, 945
EcoT14I CCWWGG 2 cut(s) 402, 1258
EcoT22I ATGCAT 1 cut(s) 1253
EcoT38I GRGCYC 1 cut(s) 248
ErhI CCWWGG 2 cut(s) 402, 1258
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 6 cut(s) 199, 349, 779, 927, 1039, 1330
FatI CATG 6 cut(s) 195, 345, 775, 923, 1035, 1326
FauNDI CATATG 1 cut(s) 360
FbaI TGATCA 1 cut(s) 1134
Fnu4HI GCNGC 4 cut(s) 663, 1004, 1065, 1215
FokI GGATG 7 cut(s) 64, 508, 943, 1199, 1242, 1295, 1351
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 4 cut(s) 663, 1004, 1065, 1215
FspBI CTAG 3 cut(s) 137, 647, 1287
GlaI GCGC 1 cut(s) 661
GluI GCNGC 4 cut(s) 663, 1004, 1065, 1215
GsaI CCCAGC 1 cut(s) 85
HaeIII GGCC 5 cut(s) 145, 207, 450, 671, 1006
HapII CCGG 4 cut(s) 231, 731, 867, 999
HgaI GACGC 1 cut(s) 316
HhaI GCGC 1 cut(s) 662
Hin1II CATG 6 cut(s) 199, 349, 779, 927, 1039, 1330
Hin6I GCGC 1 cut(s) 660
HinP1I GCGC 1 cut(s) 660
HindIII AAGCTT 2 cut(s) 787, 797
HinfI GANTC 6 cut(s) 28, 505, 543, 591, 1191, 1426
HpaII CCGG 4 cut(s) 231, 731, 867, 999
Hpy166II GTNNAC 3 cut(s) 1016, 1202, 1355
Hpy188I TCNGA 4 cut(s) 215, 1057, 1139, 1177
Hpy188III TCNNGA 3 cut(s) 47, 588, 1412
Hpy8I GTNNAC 3 cut(s) 1016, 1202, 1355
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 2 cut(s) 536, 1322
HpyCH4III ACNGT 4 cut(s) 275, 339, 1045, 1084
HpyCH4IV ACGT 3 cut(s) 188, 201, 1272
HpyF10VI GCNNNNNNNGC 9 cut(s) 133, 142, 316, 329, 668, 1022, 1070, 1382, 1391
HpyF3I CTNAG 1 cut(s) 120
HpySE526I ACGT 3 cut(s) 188, 201, 1272
Hsp92II CATG 6 cut(s) 199, 349, 779, 927, 1039, 1330
HspAI GCGC 1 cut(s) 660
KpnI GGTACC 1 cut(s) 343
Ksp22I TGATCA 1 cut(s) 1134
Kzo9I GATC 1 cut(s) 1134
LguI GCTCTTC 1 cut(s) 253
Lsp1109I GCAGC 3 cut(s) 674, 1051, 1201
LweI GCATC 5 cut(s) 58, 156, 489, 1146, 1417
MaeI CTAG 3 cut(s) 137, 647, 1287
MaeII ACGT 3 cut(s) 188, 201, 1272
MaeIII GTNAC 3 cut(s) 262, 1039, 1369
MalI GATC 1 cut(s) 1136
MboI GATC 1 cut(s) 1134
MboII GAAGA 3 cut(s) 125, 240, 596
MhlI GDGCHC 4 cut(s) 248, 628, 1018, 1357
MlsI TGGCCA 2 cut(s) 450, 671
MluCI AATT 5 cut(s) 63, 638, 989, 1281, 1420
MluNI TGGCCA 2 cut(s) 450, 671
MlyI GAGTC 2 cut(s) 514, 1435
MmeI TCCRAC 2 cut(s) 492, 908
Mox20I TGGCCA 2 cut(s) 450, 671
Mph1103I ATGCAT 1 cut(s) 1253
MscI TGGCCA 2 cut(s) 450, 671
MseI TTAA 4 cut(s) 24, 693, 785, 918
Msp20I TGGCCA 2 cut(s) 450, 671
MspCI CTTAAG 2 cut(s) 23, 784
MspI CCGG 4 cut(s) 231, 731, 867, 999
MspR9I CCNGG 1 cut(s) 1000
Mva1269I GAATGC 1 cut(s) 396
MvnI CGCG 1 cut(s) 515
MwoI GCNNNNNNNGC 9 cut(s) 133, 142, 316, 329, 668, 1022, 1070, 1382, 1391
NciI CCSGG 1 cut(s) 1000
NdeI CATATG 1 cut(s) 360
NdeII GATC 1 cut(s) 1134
NheI GCTAGC 1 cut(s) 136
NlaIII CATG 6 cut(s) 199, 349, 779, 927, 1039, 1330
NlaIV GGNNCC 2 cut(s) 341, 997
NmeAIII GCCGAG 1 cut(s) 528
NmuCI GTSAC 2 cut(s) 262, 1039
NsiI ATGCAT 1 cut(s) 1253
NspI RCATGY 2 cut(s) 349, 927
NspV TTCGAA 1 cut(s) 846
PciI ACATGT 1 cut(s) 923
PciSI GCTCTTC 1 cut(s) 253
PctI GAATGC 1 cut(s) 396
PfeI GAWTC 4 cut(s) 28, 543, 591, 1191
PkrI GCNGC 4 cut(s) 664, 1005, 1066, 1216
PleI GAGTC 2 cut(s) 513, 1434
PpsI GAGTC 2 cut(s) 513, 1434
PscI ACATGT 1 cut(s) 923
PsiI TTATAA 2 cut(s) 614, 1437
PspFI CCCAGC 1 cut(s) 81
PspN4I GGNNCC 2 cut(s) 341, 997
PspPI GGNCC 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 1214
RsaI GTAC 6 cut(s) 200, 341, 518, 973, 1110, 1203
RsaNI GTAC 6 cut(s) 199, 340, 517, 972, 1109, 1202
SapI GCTCTTC 1 cut(s) 253
SaqAI TTAA 4 cut(s) 24, 693, 785, 918
SatI GCNGC 4 cut(s) 663, 1004, 1065, 1215
Sau3AI GATC 1 cut(s) 1134
Sau96I GGNCC 1 cut(s) 143
ScaI AGTACT 1 cut(s) 1110
SchI GAGTC 2 cut(s) 514, 1435
ScrFI CCNGG 1 cut(s) 1000
SduI GDGCHC 4 cut(s) 248, 628, 1018, 1357
SfaNI GCATC 5 cut(s) 58, 156, 489, 1146, 1417
SfcI CTRYAG 1 cut(s) 1068
SfuI TTCGAA 1 cut(s) 846
SmlI CTYRAG 2 cut(s) 23, 784
SmoI CTYRAG 2 cut(s) 23, 784
Sse9I AATT 5 cut(s) 63, 638, 989, 1281, 1420
SsiI CCGC 2 cut(s) 224, 1003
SspI AATATT 1 cut(s) 836
SspMI CTAG 3 cut(s) 137, 647, 1287
StyD4I CCNGG 1 cut(s) 998
StyI CCWWGG 2 cut(s) 402, 1258
TaaI ACNGT 4 cut(s) 275, 339, 1045, 1084
TaiI ACGT 3 cut(s) 191, 204, 1275
TaqI TCGA 1 cut(s) 846
TaqII GACCGA 1 cut(s) 250
TasI AATT 5 cut(s) 63, 638, 989, 1281, 1420
TatI WGTACW 3 cut(s) 971, 1108, 1201
TauI GCSGC 1 cut(s) 1006
TfiI GAWTC 4 cut(s) 28, 543, 591, 1191
Tru1I TTAA 4 cut(s) 24, 693, 785, 918
Tru9I TTAA 4 cut(s) 24, 693, 785, 918
TscAI CASTG 6 cut(s) 176, 271, 396, 967, 1050, 1167
TseFI GTSAC 2 cut(s) 262, 1039
TseI GCWGC 3 cut(s) 662, 1064, 1214
Tsp45I GTSAC 2 cut(s) 262, 1039
TspDTI ATGAA 5 cut(s) 347, 1002, 1143, 1297, 1304
TspRI CASTG 6 cut(s) 176, 271, 396, 967, 1050, 1167
Vha464I CTTAAG 2 cut(s) 23, 784
VneI GTGCAC 2 cut(s) 1014, 1353
XapI RAATTY 3 cut(s) 638, 1281, 1420
XceI RCATGY 2 cut(s) 349, 927
XcmI CCANNNNNNNNNTGG 1 cut(s) 89
XspI CTAG 3 cut(s) 137, 647, 1287
ZrmI AGTACT 1 cut(s) 1110
Zsp2I ATGCAT 1 cut(s) 1253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.