Rroxscaffold_5G00375340

MATE efflux family protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
56164426 .. 56167061
2636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00375340.1

Sequence Viewer

Length: 1335 bp
ATGGCAGAAGTGAGTTCAAGTCTTAAGAATCCTCTGGTTCAAAATCAAGAGAGAAACCATGGAATCGATGCCCAAACATCCCAGCAAGGATTTGGTAGAGATGATGTTATTGAAGAAGCTAAGAAGCAACTATGGCTAGCCGGGCCTCTTATTGCAGTAAGTTTGATGCAGTGTAGCTTACAAATCACGTCAATCATGTACGTCGGCCATCTCGGAGAGCTTCCGCTTTCCGGTGCTTCTTTGGGCTCTTCGTTTGCTTCGGTCACCGGATACAGTATCTTGTTGGGAATGGGAAGTGCGTTAGAGACGCTATGTGGGCAAGCCTATGGGGCTAAACAGTACCACATGCTTGGAGTTCATATGCAACGAGGAATACTAACACTGTTAGCGGTGAGCATTCCCTTGGCAATCATTTGGTTCTACACAAGCACCATTCTTATTGCTCTTGGCCAAGACCAAGAGATATCCAACGAAGCGGGAACTTTCAATCGATGGATGATGCCGAGTCTTTTTGCGTACAGCTTCCTTCAATGCCTCAATAGATTCTTGCAGACACAAAACAATGTGTTTCCAATGATGATAAGCTCTGGAATCACAGCTTTTCTTCACATTATAATCTGTTGGGCACTTTGTTTCAAATTTGGACTAGGAAGCAAAGGCGCAGCATTGGCCATTAGCATTTCCAATTGGGTTAATGTGTTGTTATTGGCAAGTTATGTGATGTTCTCGCCGGTCTGCAAGAACACTTGGACAGGATTTACGAAAGAGGCATTGCATGATATCTTAAGCTTTATCAAGCTTGCCATTCCATCAGCTATAATGATATGTACAAGAGTGTCAAATGAATTGGGTGCGGGGCGGCCACAAAGTGCACGATTGGCTCTTCAAGTCATGATCACAATGGCTTTATCCGAGGGTGCCGCAATAGCAATAGCCACAGTATTGGTTCGCCGTGTTTGGGGAGTACTATACAGCAACGAGAATGAAGTGATCAGATATGTTGCTGAAATGATGCCACTGCTTGCACTATCTGACTTCTTGGATGGATTCCAATGTGTACTTTCAGGGGCTGCCAGGGGGTGTGGATGGCAAAATCTTTGTGTATGCATAAACCTTGGGGCTTACTATGTTGTGGGAATTCCTAGTGCAGTGCTTTTTGCTTTCATCCTTCATATTGGAGGCATGGGGCTTTGGATGGGTATCATTTGTGCACTTTTTGTTCAAGTTACTGCACTGGTTGCAGTAAATGCCTGCACCGACTGGTATCAAGAGGCCATGAAAGCTGCTCATAGAGTTCAGAATACCAGCTTGGTGATTGACAAGGCACTAGCTTAG

Protein Analysis

444

Amino Acids

48.15

Weight (kDa)

7.04

Isoelectric Point (pI)

32.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 49 - 208 2.2e-38 MatE
MatE PF01554 272 - 384 2.8e-17 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 614
AccB1I GGYRCC 1 cut(s) 917
AciI CCGC 6 cut(s) 224, 389, 476, 854, 859, 921
AcoI YGGCCR 4 cut(s) 205, 448, 669, 860
AcsI RAATTY 2 cut(s) 638, 1137
AdeI CACNNNGTG 1 cut(s) 869
AfaI GTAC 6 cut(s) 200, 341, 518, 829, 966, 1059
AfiI CCNNNNNNNGG 2 cut(s) 230, 958
AflII CTTAAG 2 cut(s) 23, 784
AgsI TTSAA 8 cut(s) 18, 41, 113, 487, 530, 637, 887, 1223
AjiI CACGTC 1 cut(s) 189
AjnI CCWGG 1 cut(s) 1073
AjuI GAANNNNNNNTTGG 2 cut(s) 1292, 1324
Alw21I GWGCWC 2 cut(s) 874, 1213
Alw26I GTCTC 1 cut(s) 299
Alw44I GTGCAC 2 cut(s) 870, 1209
AlwNI CAGNNNCTG 1 cut(s) 1070
AoxI GGCC 6 cut(s) 143, 205, 448, 669, 860, 1272
ApaLI GTGCAC 2 cut(s) 870, 1209
ApeKI GCWGC 3 cut(s) 662, 1070, 1283
ApoI RAATTY 2 cut(s) 638, 1137
AspLEI GCGC 1 cut(s) 662
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 1 cut(s) 142
AsuHPI GGTGA 3 cut(s) 256, 403, 1324
AsuNHI GCTAGC 1 cut(s) 136
BaeGI GKGCMC 3 cut(s) 628, 874, 1213
BalI TGGCCA 2 cut(s) 450, 671
BanI GGYRCC 1 cut(s) 917
BanII GRGCYC 1 cut(s) 248
Bbv12I GWGCWC 2 cut(s) 874, 1213
BbvI GCAGC 3 cut(s) 674, 1057, 1270
BccI CCATC 6 cut(s) 216, 486, 817, 1037, 1080, 1189
BceAI ACGGC 1 cut(s) 936
BciT130I CCWGG 1 cut(s) 1075
BciVI GTATCC 1 cut(s) 263
BclI TGATCA 2 cut(s) 894, 990
BcnI CCSGG 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 4 cut(s) 137, 647, 1143, 1328
BfrI CTTAAG 2 cut(s) 23, 784
BfuI GTATCC 1 cut(s) 263
BglI GCCNNNNNGGC 1 cut(s) 329
BisI GCNGC 5 cut(s) 663, 860, 921, 1071, 1284
BlsI GCNGC 5 cut(s) 664, 861, 922, 1072, 1285
BmcAI AGTACT 1 cut(s) 966
Bme1390I CCNGG 2 cut(s) 142, 1075
BmgBI CACGTC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 919
BmrFI CCNGG 2 cut(s) 142, 1075
BmsI GCATC 4 cut(s) 58, 156, 489, 1002
BmtI GCTAGC 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 142
Bsa29I ATCGAT 2 cut(s) 66, 490
BsaBI GATNNNNATC 1 cut(s) 1199
BsaJI CCNNGG 5 cut(s) 58, 402, 912, 1074, 1114
BsaWI WCCGGW 2 cut(s) 230, 266
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 958
Bse118I RCCGGY 1 cut(s) 730
Bse1I ACTGG 2 cut(s) 1239, 1265
Bse3DI GCAATG 1 cut(s) 770
Bse8I GATNNNNATC 1 cut(s) 1199
BseBI CCWGG 1 cut(s) 1075
BseCI ATCGAT 2 cut(s) 66, 490
BseDI CCNNGG 5 cut(s) 58, 402, 912, 1074, 1114
BseGI GGATG 6 cut(s) 77, 501, 1048, 1091, 1164, 1200
BseJI GATNNNNATC 1 cut(s) 1199
BseLI CCNNNNNNNGG 2 cut(s) 230, 958
BseMI GCAATG 1 cut(s) 770
BseNI ACTGG 2 cut(s) 1239, 1265
BseSI GKGCMC 3 cut(s) 628, 874, 1213
BseXI GCAGC 3 cut(s) 674, 1057, 1270
BseYI CCCAGC 1 cut(s) 81
BsgI GTGCAG 3 cut(s) 1167, 1215, 1237
BshFI GGCC 6 cut(s) 145, 207, 450, 671, 862, 1274
BshNI GGYRCC 1 cut(s) 917
BshVI ATCGAT 2 cut(s) 66, 490
BsiHKAI GWGCWC 2 cut(s) 874, 1213
BsiSI CCGG 4 cut(s) 141, 231, 267, 731
BslI CCNNNNNNNGG 2 cut(s) 230, 958
BsmAI GTCTC 1 cut(s) 299
BsmBI CGTCTC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 396
BsnI GGCC 6 cut(s) 145, 207, 450, 671, 862, 1274
Bsp1286I GDGCHC 4 cut(s) 248, 628, 874, 1213
Bsp1407I TGTACA 1 cut(s) 827
Bsp143I GATC 2 cut(s) 894, 990
Bsp19I CCATGG 1 cut(s) 58
BspACI CCGC 6 cut(s) 224, 389, 476, 854, 859, 921
BspANI GGCC 6 cut(s) 145, 207, 450, 671, 862, 1274
BspDI ATCGAT 2 cut(s) 66, 490
BspHI TCATGA 1 cut(s) 891
BspLI GGNNCC 1 cut(s) 919
BspOI GCTAGC 1 cut(s) 140
BspQI GCTCTTC 2 cut(s) 253, 888
BspT107I GGYRCC 1 cut(s) 917
BspTI CTTAAG 2 cut(s) 23, 784
BsrDI GCAATG 1 cut(s) 770
BsrFI RCCGGY 1 cut(s) 730
BsrGI TGTACA 1 cut(s) 827
BsrI ACTGG 2 cut(s) 1239, 1265
BssAI RCCGGY 1 cut(s) 730
BssECI CCNNGG 5 cut(s) 58, 402, 912, 1074, 1114
BssMI GATC 2 cut(s) 894, 990
BssT1I CCWWGG 3 cut(s) 58, 402, 1114
Bst2UI CCWGG 1 cut(s) 1075
Bst4CI ACNGT 4 cut(s) 275, 339, 384, 940
Bst6I CTCTTC 2 cut(s) 253, 888
BstAFI CTTAAG 2 cut(s) 23, 784
BstAPI GCANNNNNTGC 2 cut(s) 1238, 1247
BstAUI TGTACA 1 cut(s) 827
BstC8I GCNNGC 5 cut(s) 138, 321, 801, 1023, 1252
BstDEI CTNAG 2 cut(s) 120, 1332
BstDSI CCRYGG 1 cut(s) 58
BstEII GGTNACC 1 cut(s) 262
BstF5I GGATG 6 cut(s) 77, 501, 1048, 1091, 1164, 1200
BstHHI GCGC 1 cut(s) 662
BstKTI GATC 2 cut(s) 897, 993
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 2 cut(s) 894, 990
BstNI CCWGG 1 cut(s) 1075
BstNSI RCATGY 1 cut(s) 349
BstPI GGTNACC 1 cut(s) 262
BstSCI CCNGG 2 cut(s) 140, 1073
BstSLI GKGCMC 3 cut(s) 628, 874, 1213
BstV1I GCAGC 3 cut(s) 674, 1057, 1270
BstXI CCANNNNNNTGG 2 cut(s) 350, 943
Bsu15I ATCGAT 2 cut(s) 66, 490
BsuI GTATCC 1 cut(s) 263
BsuRI GGCC 6 cut(s) 145, 207, 450, 671, 862, 1274
BsuTUI ATCGAT 2 cut(s) 66, 490
BtgI CCRYGG 1 cut(s) 58
BtrI CACGTC 1 cut(s) 189
BtsCI GGATG 6 cut(s) 77, 501, 1048, 1091, 1164, 1200
BtsI GCAGTG 3 cut(s) 176, 1016, 1155
BtsIMutI CAGTG 5 cut(s) 176, 380, 1016, 1155, 1232
Cac8I GCNNGC 5 cut(s) 138, 321, 801, 1023, 1252
CaiI CAGNNNCTG 1 cut(s) 1070
CciI TCATGA 1 cut(s) 891
CfoI GCGC 1 cut(s) 662
Cfr10I RCCGGY 1 cut(s) 730
Cfr13I GGNCC 1 cut(s) 143
ClaI ATCGAT 2 cut(s) 66, 490
CseI GACGC 1 cut(s) 316
Csp6I GTAC 6 cut(s) 199, 340, 517, 828, 965, 1058
CviAII CATG 7 cut(s) 59, 196, 346, 776, 892, 1183, 1276
CviQI GTAC 6 cut(s) 199, 340, 517, 828, 965, 1058
DdeI CTNAG 2 cut(s) 120, 1332
DpnI GATC 2 cut(s) 896, 992
DpnII GATC 2 cut(s) 894, 990
DraIII CACNNNGTG 1 cut(s) 869
EaeI YGGCCR 4 cut(s) 205, 448, 669, 860
Eam1104I CTCTTC 2 cut(s) 253, 888
EarI CTCTTC 2 cut(s) 253, 888
Eco130I CCWWGG 3 cut(s) 58, 402, 1114
Eco24I GRGCYC 1 cut(s) 248
Eco32I GATATC 2 cut(s) 465, 781
Eco91I GGTNACC 1 cut(s) 262
EcoO65I GGTNACC 1 cut(s) 262
EcoRI GAATTC 1 cut(s) 1137
EcoRII CCWGG 1 cut(s) 1073
EcoRV GATATC 2 cut(s) 465, 781
EcoT14I CCWWGG 3 cut(s) 58, 402, 1114
EcoT22I ATGCAT 1 cut(s) 1109
EcoT38I GRGCYC 1 cut(s) 248
ErhI CCWWGG 3 cut(s) 58, 402, 1114
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 7 cut(s) 62, 199, 349, 779, 895, 1186, 1279
FatI CATG 7 cut(s) 58, 195, 345, 775, 891, 1182, 1275
FauI CCCGC 2 cut(s) 469, 847
FauNDI CATATG 1 cut(s) 360
FbaI TGATCA 2 cut(s) 894, 990
Fnu4HI GCNGC 5 cut(s) 663, 860, 921, 1071, 1284
FokI GGATG 6 cut(s) 64, 508, 1055, 1098, 1151, 1207
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 5 cut(s) 663, 860, 921, 1071, 1284
FspBI CTAG 4 cut(s) 137, 647, 1143, 1328
GlaI GCGC 1 cut(s) 661
GluI GCNGC 5 cut(s) 663, 860, 921, 1071, 1284
GsaI CCCAGC 1 cut(s) 85
HaeIII GGCC 6 cut(s) 145, 207, 450, 671, 862, 1274
HapII CCGG 4 cut(s) 141, 231, 267, 731
HgaI GACGC 1 cut(s) 316
HhaI GCGC 1 cut(s) 662
Hin1II CATG 7 cut(s) 62, 199, 349, 779, 895, 1186, 1279
Hin6I GCGC 1 cut(s) 660
HinP1I GCGC 1 cut(s) 660
HindIII AAGCTT 2 cut(s) 787, 797
HinfI GANTC 6 cut(s) 28, 63, 505, 543, 591, 1047
HpaII CCGG 4 cut(s) 141, 231, 267, 731
HphI GGTGA 3 cut(s) 256, 403, 1324
Hpy166II GTNNAC 3 cut(s) 872, 1058, 1211
Hpy188I TCNGA 5 cut(s) 215, 913, 995, 1033, 1299
Hpy188III TCNNGA 4 cut(s) 47, 588, 892, 1268
Hpy8I GTNNAC 3 cut(s) 872, 1058, 1211
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 2 cut(s) 536, 1178
HpyCH4III ACNGT 4 cut(s) 275, 339, 384, 940
HpyCH4IV ACGT 2 cut(s) 188, 201
HpyF3I CTNAG 2 cut(s) 120, 1332
HpySE526I ACGT 2 cut(s) 188, 201
Hsp92II CATG 7 cut(s) 62, 199, 349, 779, 895, 1186, 1279
HspAI GCGC 1 cut(s) 660
Ksp22I TGATCA 2 cut(s) 894, 990
Kzo9I GATC 2 cut(s) 894, 990
LguI GCTCTTC 2 cut(s) 253, 888
Lsp1109I GCAGC 3 cut(s) 674, 1057, 1270
LweI GCATC 4 cut(s) 58, 156, 489, 1002
MaeI CTAG 4 cut(s) 137, 647, 1143, 1328
MaeII ACGT 2 cut(s) 188, 201
MaeIII GTNAC 2 cut(s) 262, 1225
MalI GATC 2 cut(s) 896, 992
MboI GATC 2 cut(s) 894, 990
MboII GAAGA 4 cut(s) 125, 240, 596, 875
MfeI CAATTG 1 cut(s) 685
MhlI GDGCHC 4 cut(s) 248, 628, 874, 1213
MlsI TGGCCA 2 cut(s) 450, 671
MluCI AATT 4 cut(s) 638, 685, 845, 1137
MluNI TGGCCA 2 cut(s) 450, 671
MlyI GAGTC 1 cut(s) 514
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 8 cut(s) 42, 156, 362, 545, 760, 907, 1172, 1264
Mox20I TGGCCA 2 cut(s) 450, 671
Mph1103I ATGCAT 1 cut(s) 1109
MscI TGGCCA 2 cut(s) 450, 671
MseI TTAA 3 cut(s) 24, 693, 785
Msp20I TGGCCA 2 cut(s) 450, 671
MspCI CTTAAG 2 cut(s) 23, 784
MspI CCGG 4 cut(s) 141, 231, 267, 731
MspR9I CCNGG 2 cut(s) 142, 1075
MunI CAATTG 1 cut(s) 685
Mva1269I GAATGC 1 cut(s) 396
MvaI CCWGG 1 cut(s) 1075
NciI CCSGG 1 cut(s) 142
NcoI CCATGG 1 cut(s) 58
NdeI CATATG 1 cut(s) 360
NdeII GATC 2 cut(s) 894, 990
NheI GCTAGC 1 cut(s) 136
NlaIII CATG 7 cut(s) 62, 199, 349, 779, 895, 1186, 1279
NlaIV GGNNCC 1 cut(s) 919
NmeAIII GCCGAG 1 cut(s) 528
NmuCI GTSAC 1 cut(s) 262
NsiI ATGCAT 1 cut(s) 1109
NspI RCATGY 1 cut(s) 349
PagI TCATGA 1 cut(s) 891
PciSI GCTCTTC 2 cut(s) 253, 888
PctI GAATGC 1 cut(s) 396
PfeI GAWTC 5 cut(s) 28, 63, 543, 591, 1047
PkrI GCNGC 5 cut(s) 664, 861, 922, 1072, 1285
PleI GAGTC 1 cut(s) 513
PpsI GAGTC 1 cut(s) 513
PsiI TTATAA 1 cut(s) 614
Psp6I CCWGG 1 cut(s) 1073
PspEI GGTNACC 1 cut(s) 262
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 1 cut(s) 1073
PspN4I GGNNCC 1 cut(s) 919
PspPI GGNCC 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 1070
RsaI GTAC 6 cut(s) 200, 341, 518, 829, 966, 1059
RsaNI GTAC 6 cut(s) 199, 340, 517, 828, 965, 1058
SapI GCTCTTC 2 cut(s) 253, 888
SaqAI TTAA 3 cut(s) 24, 693, 785
SatI GCNGC 5 cut(s) 663, 860, 921, 1071, 1284
Sau3AI GATC 2 cut(s) 894, 990
Sau96I GGNCC 1 cut(s) 143
ScaI AGTACT 1 cut(s) 966
SchI GAGTC 1 cut(s) 514
ScrFI CCNGG 2 cut(s) 142, 1075
SduI GDGCHC 4 cut(s) 248, 628, 874, 1213
SfaNI GCATC 4 cut(s) 58, 156, 489, 1002
SmlI CTYRAG 2 cut(s) 23, 784
SmoI CTYRAG 2 cut(s) 23, 784
Sse9I AATT 4 cut(s) 638, 685, 845, 1137
SsiI CCGC 6 cut(s) 224, 389, 476, 854, 859, 921
SspMI CTAG 4 cut(s) 137, 647, 1143, 1328
StyD4I CCNGG 2 cut(s) 140, 1073
StyI CCWWGG 3 cut(s) 58, 402, 1114
TaaI ACNGT 4 cut(s) 275, 339, 384, 940
TaiI ACGT 2 cut(s) 191, 204
TaqI TCGA 2 cut(s) 66, 490
TaqII GACCGA 1 cut(s) 250
TasI AATT 4 cut(s) 638, 685, 845, 1137
TatI WGTACW 3 cut(s) 827, 964, 1057
TauI GCSGC 2 cut(s) 862, 923
TfiI GAWTC 5 cut(s) 28, 63, 543, 591, 1047
Tru1I TTAA 3 cut(s) 24, 693, 785
Tru9I TTAA 3 cut(s) 24, 693, 785
TscAI CASTG 5 cut(s) 176, 387, 1023, 1155, 1239
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 3 cut(s) 662, 1070, 1283
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 6 cut(s) 347, 858, 999, 1153, 1160, 1292
TspRI CASTG 5 cut(s) 176, 387, 1023, 1155, 1239
Vha464I CTTAAG 2 cut(s) 23, 784
VneI GTGCAC 2 cut(s) 870, 1209
XapI RAATTY 2 cut(s) 638, 1137
XceI RCATGY 1 cut(s) 349
XcmI CCANNNNNNNNNTGG 1 cut(s) 89
XspI CTAG 4 cut(s) 137, 647, 1143, 1328
ZrmI AGTACT 1 cut(s) 966
Zsp2I ATGCAT 1 cut(s) 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.