Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006063

Physical Location & Seq

Genomic Coordinates Reverse (-)

15406622 .. 15409912

Gene Structure 3291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G36740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAAATCGATGAAGAAGAGCCAATGGTGTTCTTGGACCGTACAACAAGAGCAACACGGGGTAAACGGATGACCAAGTTGCTTGATGACGAAGTAGAAGAAGATGAACAGTTTTGGAATCAAGAAGCTCTTAAAGAGGAAGAACATGATGATGAATATGAAGCAGAACGTGAGGTTGCTGATGAGTTTGACAGTGACTTCAATGACGATGAGCCTGAGCCTGATGCAGTCGCTGTAAATGAAAAAGAATTGAGGGATCTGCCAAAGAAGCGGCTGATTTACCCTGGGAAAACTGCTTCAAAGAAAAAGAAAAAGAAGACGAAGGTAGTTTCACAACTAGAATATATTCCTGGAGATGAGAAGCCAGGTGAAGAATTGGGAAACAAGGAACAAGAAGAAAAAGAAGAGAATGAAGCACAAGAAGATATGGAAGGTGAGAAAGTCATTAGGAAATCAACACGGACTTCAGTGGTTGTACGGCAAGCAGAAAGAGATGCATTGCGTGCTGCTATACAAGCAACAACAAAGCCAATACAAAGGAAAAAAGTAGGGGAGGAAAAACGGATGACCCAAGAAGAAATGCTGCTGGAAGCTGCTCAAACAGAAATCATGAACTTGAGGAATTTAGAACGTGTCTTGGCAAGGGAAGAAGAAGTAAAAAAGAAAGCGATTGTGCATAAAGCAGTCTACAAGGGTCCTCAGATTCGGTATCATTCAAAAGATGGATGTAACTATTTAGAATTCTGTAATGGTGCGTCATTCAATTCAGAGTTGTCGACGAAGTCTGTTCCCTATCCAGAAAAAGCTGTATGTGTGATTACGGGATTACCTGCCAAGTACCGGGATCCAAAAACGGGTCTTCCTTATGCAACTAGAGACGCCTTCAAAGCAATACGTGAAAGGTTCATGGACGAACATGATGGTTTGAGAAAGAAAATGGAGATGGGAGATTTGTTTGATACACTAGTGGCGAAAGGTTTTGCAACAAAACAAAAGAGAACGAAGATTCCAAAGAGTAACAAATCATTTTCCCTCAGAAGCTCAGCTCGTTTCCTTAGCTCCGAGTCTGAAGAAGAGAGTGAAGAAGATTCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0034728 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043486 GO:0043933 GO:0044424 GO:0044464 GO:0051276 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YL1 YL1_C

Protein Analysis

365

Amino Acids

42.15

Weight (kDa)

5.15

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YL1	PF05764	14 - 239	4.4e-39	YL1 nuclear protein
YL1_C	PF08265	270 - 298	6.7e-15	YL1 nuclear protein C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36740 AT2G36740
fragaria_vesca	FvH4_7g33430 FvH4_7g33430 FvH4_7g33430 FvH4_7g33430
malus_domestica	MD07G1075300.v1.1 MD07G1304400.v1.1
prunus_persica	Prupe.2G323000_v2.0.a1
pyrus_communis	pycom07g05940
rosa_chinensis	RchiOBHm_Chr1g0383401
rosa_laevigata	RLG00000026104
rosa_multiflora	Rmu_co8369689.1_g000001 Rmu_sc0007173.1_g000009 Rmu_sc0012471.1_g000026
rosa_roxburghii	Rroxscaffold_4G00277320
rosa_rugosa	Rorug01G0441300 Rorug01G0441400 Rorug01G0441500 Rorug01G0441600
rosa_samantha	Rh1AG467200 Rh1BG424500 Rh1BG424600 Rh1CG437500 Rh1DG457200 Rh1DG457300
rosa_wichuraiana	Rw1G040540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	838
AccI	GTMKAC	2 cut(s)	687, 776
AciI	CCGC	1 cut(s)	271
AclWI	GGATC	3 cut(s)	264, 839, 852
AcsI	RAATTY	2 cut(s)	622, 740
AcuI	CTGAAG	2 cut(s)	450, 1089
AcyI	GRCGYC	1 cut(s)	879
AfaI	GTAC	3 cut(s)	43, 477, 839
AfiI	CCNNNNNNNGG	2 cut(s)	840, 854
AflIII	ACRYGT	1 cut(s)	631
AgsI	TTSAA	5 cut(s)	202, 300, 717, 763, 886
AhlI	ACTAGT	1 cut(s)	964
AjnI	CCWGG	3 cut(s)	283, 349, 364
AloI	GAACNNNNNNTCC	2 cut(s)	991, 1023
AluBI	AGCT	6 cut(s)	128, 593, 806, 1041, 1046, 1059
AluI	AGCT	6 cut(s)	128, 593, 806, 1041, 1046, 1059
Alw26I	GTCTC	1 cut(s)	870
AlwI	GGATC	3 cut(s)	264, 839, 852
AlwNI	CAGNNNCTG	1 cut(s)	233
ApeKI	GCWGC	3 cut(s)	506, 583, 593
ApoI	RAATTY	2 cut(s)	622, 740
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	2 cut(s)	37, 695
AsuC2I	CCSGG	1 cut(s)	842
AsuHPI	GGTGA	2 cut(s)	380, 446
AvaII	GGWCC	2 cut(s)	37, 695
BaeI	ACNNNNGTAYC	2 cut(s)	951, 984
BamHI	GGATCC	1 cut(s)	844
BbsI	GAAGAC	2 cut(s)	323, 851
BbvI	GCAGC	3 cut(s)	493, 570, 580
BccI	CCATC	3 cut(s)	716, 914, 937
BceAI	ACGGC	1 cut(s)	494
BciT130I	CCWGG	3 cut(s)	285, 351, 366
BcnI	CCSGG	1 cut(s)	842
BcoDI	GTCTC	1 cut(s)	870
BcuI	ACTAGT	1 cut(s)	964
BfaI	CTAG	3 cut(s)	338, 873, 965
BfuAI	ACCTGC	1 cut(s)	838
BisI	GCNGC	4 cut(s)	272, 507, 584, 594
BlpI	GCTNAGC	1 cut(s)	1042
BlsI	GCNGC	4 cut(s)	273, 508, 585, 595
Bme1390I	CCNGG	4 cut(s)	285, 351, 366, 842
Bme18I	GGWCC	2 cut(s)	37, 695
BmgT120I	GGNCC	2 cut(s)	37, 695
BmiI	GGNNCC	2 cut(s)	696, 846
BmrFI	CCNGG	4 cut(s)	285, 351, 366, 842
BmsI	GCATC	2 cut(s)	214, 484
BpiI	GAAGAC	2 cut(s)	323, 851
BpmI	CTGGAG	1 cut(s)	372
Bpu10I	CCTNAGC	2 cut(s)	216, 1055
Bpu1102I	GCTNAGC	1 cut(s)	1042
BpuEI	CTTGAG	1 cut(s)	637
BpuMI	CCSGG	1 cut(s)	842
Bsa29I	ATCGAT	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	896
BsaHI	GRCGYC	1 cut(s)	879
BsaJI	CCNNGG	2 cut(s)	283, 284
Bsc4I	CCNNNNNNNGG	2 cut(s)	840, 854
Bse3DI	GCAATG	1 cut(s)	497
BseBI	CCWGG	3 cut(s)	285, 351, 366
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	283, 284
BseGI	GGATG	3 cut(s)	75, 570, 731
BseLI	CCNNNNNNNGG	2 cut(s)	840, 854
BseMI	GCAATG	1 cut(s)	497
BseMII	CTCAG	4 cut(s)	207, 713, 1048, 1056
BseXI	GCAGC	3 cut(s)	493, 570, 580
BshVI	ATCGAT	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	841
BslI	CCNNNNNNNGG	2 cut(s)	840, 854
BsmAI	GTCTC	1 cut(s)	870
BsmBI	CGTCTC	1 cut(s)	870
Bsp143I	GATC	2 cut(s)	256, 844
Bsp1720I	GCTNAGC	1 cut(s)	1042
BspACI	CCGC	1 cut(s)	271
BspCNI	CTCAG	4 cut(s)	208, 712, 1047, 1055
BspDI	ATCGAT	1 cut(s)	9
BspHI	TCATGA	1 cut(s)	609
BspLI	GGNNCC	2 cut(s)	696, 846
BspMI	ACCTGC	1 cut(s)	838
BspPI	GGATC	3 cut(s)	264, 839, 852
BspQI	GCTCTTC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	497
BssECI	CCNNGG	2 cut(s)	283, 284
BssMI	GATC	2 cut(s)	256, 844
BssNI	GRCGYC	1 cut(s)	879
Bst2UI	CCWGG	3 cut(s)	285, 351, 366
Bst4CI	ACNGT	3 cut(s)	41, 111, 194
Bst6I	CTCTTC	3 cut(s)	12, 399, 1068
BstACI	GRCGYC	1 cut(s)	879
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstBAI	YACGTR	1 cut(s)	896
BstC8I	GCNNGC	2 cut(s)	483, 504
BstDEI	CTNAG	5 cut(s)	216, 699, 1034, 1042, 1055
BstF5I	GGATG	3 cut(s)	75, 570, 731
BstKTI	GATC	2 cut(s)	259, 847
BstMAI	GTCTC	1 cut(s)	870
BstMBI	GATC	2 cut(s)	256, 844
BstMWI	GCNNNNNNNGC	4 cut(s)	268, 503, 515, 887
BstNI	CCWGG	3 cut(s)	285, 351, 366
BstSCI	CCNGG	4 cut(s)	283, 349, 364, 840
BstV1I	GCAGC	3 cut(s)	493, 570, 580
BstV2I	GAAGAC	2 cut(s)	323, 851
BstX2I	RGATCY	2 cut(s)	256, 844
BstYI	RGATCY	2 cut(s)	256, 844
Bsu15I	ATCGAT	1 cut(s)	9
BsuTUI	ATCGAT	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	75, 570, 731
BtsIMutI	CAGTG	2 cut(s)	199, 474
BveI	ACCTGC	1 cut(s)	838
Cac8I	GCNNGC	2 cut(s)	483, 504
CaiI	CAGNNNCTG	1 cut(s)	233
CciI	TCATGA	1 cut(s)	609
Cfr13I	GGNCC	2 cut(s)	37, 695
ClaI	ATCGAT	1 cut(s)	9
CseI	GACGC	2 cut(s)	744, 887
Csp6I	GTAC	3 cut(s)	42, 476, 838
CviAII	CATG	4 cut(s)	146, 610, 907, 917
CviQI	GTAC	3 cut(s)	42, 476, 838
DdeI	CTNAG	5 cut(s)	216, 699, 1034, 1042, 1055
DpnI	GATC	2 cut(s)	258, 846
DpnII	GATC	2 cut(s)	256, 844
Eam1104I	CTCTTC	3 cut(s)	12, 399, 1068
EarI	CTCTTC	3 cut(s)	12, 399, 1068
Eco47I	GGWCC	2 cut(s)	37, 695
Eco57I	CTGAAG	2 cut(s)	450, 1089
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRI	GAATTC	1 cut(s)	740
EcoRII	CCWGG	3 cut(s)	283, 349, 364
EcoT22I	ATGCAT	1 cut(s)	499
Esp3I	CGTCTC	1 cut(s)	870
FaeI	CATG	4 cut(s)	149, 613, 910, 920
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	4 cut(s)	145, 609, 906, 916
FblI	GTMKAC	2 cut(s)	687, 776
Fnu4HI	GCNGC	4 cut(s)	272, 507, 584, 594
FokI	GGATG	3 cut(s)	82, 577, 738
Fsp4HI	GCNGC	4 cut(s)	272, 507, 584, 594
FspBI	CTAG	3 cut(s)	338, 873, 965
GluI	GCNGC	4 cut(s)	272, 507, 584, 594
GsuI	CTGGAG	1 cut(s)	372
HapII	CCGG	1 cut(s)	841
HgaI	GACGC	2 cut(s)	744, 887
Hin1I	GRCGYC	1 cut(s)	879
Hin1II	CATG	4 cut(s)	149, 613, 910, 920
HincII	GTYRAC	1 cut(s)	777
HindII	GTYRAC	1 cut(s)	777
HinfI	GANTC	5 cut(s)	118, 703, 1006, 1064, 1088
HpaII	CCGG	1 cut(s)	841
HphI	GGTGA	2 cut(s)	380, 446
Hpy166II	GTNNAC	3 cut(s)	65, 688, 777
Hpy188I	TCNGA	6 cut(s)	702, 769, 1037, 1063, 1069, 1093
Hpy188III	TCNNGA	3 cut(s)	122, 610, 797
Hpy8I	GTNNAC	3 cut(s)	65, 688, 777
Hpy99I	CGWCG	1 cut(s)	781
HpyAV	CCTTC	3 cut(s)	316, 425, 892
HpyCH4III	ACNGT	3 cut(s)	41, 111, 194
HpyCH4IV	ACGT	3 cut(s)	169, 631, 895
HpyCH4V	TGCA	5 cut(s)	227, 497, 676, 869, 983
HpyF10VI	GCNNNNNNNGC	4 cut(s)	268, 503, 515, 887
HpyF3I	CTNAG	5 cut(s)	216, 699, 1034, 1042, 1055
HpySE526I	ACGT	3 cut(s)	169, 631, 895
Hsp92I	GRCGYC	1 cut(s)	879
Hsp92II	CATG	4 cut(s)	149, 613, 910, 920
Kzo9I	GATC	2 cut(s)	256, 844
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	1064
Lsp1109I	GCAGC	3 cut(s)	493, 570, 580
LweI	GCATC	2 cut(s)	214, 484
MaeI	CTAG	3 cut(s)	338, 873, 965
MaeII	ACGT	3 cut(s)	169, 631, 895
MaeIII	GTNAC	3 cut(s)	194, 728, 1016
MalI	GATC	2 cut(s)	258, 846
MboI	GATC	2 cut(s)	256, 844
MflI	RGATCY	2 cut(s)	256, 844
MluCI	AATT	5 cut(s)	248, 374, 622, 740, 763
MlyI	GAGTC	1 cut(s)	1073
MnlI	CCTC	7 cut(s)	130, 166, 246, 547, 612, 708, 1043
Mph1103I	ATGCAT	1 cut(s)	499
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	2 cut(s)	132, 1096
MslI	CAYNNNNRTG	1 cut(s)	150
MspI	CCGG	1 cut(s)	841
MspR9I	CCNGG	4 cut(s)	285, 351, 366, 842
MvaI	CCWGG	3 cut(s)	285, 351, 366
MwoI	GCNNNNNNNGC	4 cut(s)	268, 503, 515, 887
NciI	CCSGG	1 cut(s)	842
NdeII	GATC	2 cut(s)	256, 844
NlaIII	CATG	4 cut(s)	149, 613, 910, 920
NlaIV	GGNNCC	2 cut(s)	696, 846
NmuCI	GTSAC	1 cut(s)	194
NsiI	ATGCAT	1 cut(s)	499
PagI	TCATGA	1 cut(s)	609
PasI	CCCWGGG	1 cut(s)	284
PciSI	GCTCTTC	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	4 cut(s)	118, 703, 1006, 1088
PflFI	GACNNNGTC	1 cut(s)	781
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	4 cut(s)	273, 508, 585, 595
PleI	GAGTC	1 cut(s)	1072
PpsI	GAGTC	1 cut(s)	1072
Ppu21I	YACGTR	1 cut(s)	896
PpuMI	RGGWCCY	1 cut(s)	695
Psp5II	RGGWCCY	1 cut(s)	695
Psp6I	CCWGG	3 cut(s)	283, 349, 364
PspGI	CCWGG	3 cut(s)	283, 349, 364
PspN4I	GGNNCC	2 cut(s)	696, 846
PspPI	GGNCC	2 cut(s)	37, 695
PspPPI	RGGWCCY	1 cut(s)	695
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	2 cut(s)	256, 844
PsyI	GACNNNGTC	1 cut(s)	781
RsaI	GTAC	3 cut(s)	43, 477, 839
RsaNI	GTAC	3 cut(s)	42, 476, 838
RseI	CAYNNNNRTG	1 cut(s)	150
SalI	GTCGAC	1 cut(s)	775
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	132, 1096
SatI	GCNGC	4 cut(s)	272, 507, 584, 594
Sau3AI	GATC	2 cut(s)	256, 844
Sau96I	GGNCC	2 cut(s)	37, 695
SchI	GAGTC	1 cut(s)	1073
ScrFI	CCNGG	4 cut(s)	285, 351, 366, 842
SfaNI	GCATC	2 cut(s)	214, 484
SinI	GGWCC	2 cut(s)	37, 695
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	616
SmoI	CTYRAG	1 cut(s)	616
SpeI	ACTAGT	1 cut(s)	964
Sse9I	AATT	5 cut(s)	248, 374, 622, 740, 763
SsiI	CCGC	1 cut(s)	271
SspMI	CTAG	3 cut(s)	338, 873, 965
StyD4I	CCNGG	4 cut(s)	283, 349, 364, 840
TaaI	ACNGT	3 cut(s)	41, 111, 194
TaiI	ACGT	3 cut(s)	172, 634, 898
TaqI	TCGA	2 cut(s)	9, 776
TasI	AATT	5 cut(s)	248, 374, 622, 740, 763
TauI	GCSGC	1 cut(s)	274
TfiI	GAWTC	4 cut(s)	118, 703, 1006, 1088
Tru1I	TTAA	2 cut(s)	132, 1096
Tru9I	TTAA	2 cut(s)	132, 1096
TscAI	CASTG	2 cut(s)	199, 474
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	3 cut(s)	506, 583, 593
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	8 cut(s)	27, 120, 168, 174, 255, 426, 626, 895
TspGWI	ACGGA	3 cut(s)	82, 475, 577
TspRI	CASTG	2 cut(s)	199, 474
Tth111I	GACNNNGTC	1 cut(s)	781
VpaK11BI	GGWCC	2 cut(s)	37, 695
XapI	RAATTY	2 cut(s)	622, 740
XmiI	GTMKAC	2 cut(s)	687, 776
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	3 cut(s)	338, 873, 965
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.