Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006063

Physical Location & Seq

Genomic Coordinates Forward (+)

23788863 .. 23792445

Gene Structure 3583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGAGGACTCGAAAGATGACGCGCCGGTGTTTCTGGATCGTACCTCACGCGCCACCAGAGGGAAGAGGATGACGAAGTTGCTGGATGATGAAATCGAAGAGGACGAGACGTTCTGGAATCAAGAAGCTCTTAAAGATGAGGAAGAAGATGATAACTATGAAGCAGAGCCTGAAGTTGCTGATGTTTTCGATAGCGATTTCGATGAAGATGAGCCTGACCCGGACGAAGGTGCCGAAAACAATGAGGGAGAGGAAAGACGGACGAAAAAGCGGTTGATATTTCCGGGGAAGCAATCAAGCAAGAAGAAGAAGATAAAAGTGCTTTCGAAGATAGAAGACAGCTCCAAGAAGGAAAAGCTGAAATCTTCTTCTAAAGCGGAACAACACGCTCATGATGCTCCAGAGGATGGAGAAGGGGAGAGAAGCGTGAGGAAATCTACGAGAACTGCAGTGGTTGTTAGGCAAGCTGAGAGAGAGGCAAATCGTGCCGCTTTGCAAGCAACCTATAGGCCGATAAAGAGAAAAAAGGAAGGCGAAGAGAAGAGGATGAGTCAGGAAGAGATGCTTCTGGACGCTGCTCAAACAGAAATTATCAACTTGAGGAACTTGGAGCGTGTTTTAGCAAGGGAGGAAGAAGTTAAGAAAAGAGCAATCGTGCATAAGGCTGTCTATACTGGTCCACAACTACGTTATTTCTCAAAAGACGGTTCCTCATATCTAGAATTCAGTAGAGGCTTATCATTCCAGTCTGAACTCTCTACAACATCTTCTCCCTATCCTGAGAAAGCTGTCTGTGCAGTTACCGGCTTACCTGCCAAGTACCGTGATCCAAAGACAGGGCTACCTTATGCAACAAAGGAAGCTTTTAAAGTTATTCGGCAGCGTTTTCTACAAGAAAGTGGTGCAATTAGGAAAGAGATGGACCTGGGTGATTTGTATGATTCACTTTCCGGGAAAGGTTTTTCAGCAAGGCAGAAGAGATCGGTGGTGTCAAATAGAAGTGAGGTGTCATATCCTCGATCCTTTGCACGTTTCAGGGCTCCAGCTCTTGGAAGTGTATCCTCTGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0034728 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043486 GO:0043933 GO:0044424 GO:0044464 GO:0051276 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YL1 YL1_C

Protein Analysis

358

Amino Acids

40.64

Weight (kDa)

5.7

Isoelectric Point (pI)

61.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YL1	PF05764	14 - 233	1.6e-37	YL1 nuclear protein
YL1_C	PF08265	264 - 292	3.1e-16	YL1 nuclear protein C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36740 AT2G36740
fragaria_vesca	FvH4_7g33430 FvH4_7g33430 FvH4_7g33430 FvH4_7g33430
malus_domestica	MD07G1075300.v1.1 MD07G1304400.v1.1
prunus_persica	Prupe.2G323000_v2.0.a1
pyrus_communis	pycom07g05940
rosa_chinensis	RchiOBHm_Chr1g0383401
rosa_laevigata	RLG00000026104
rosa_multiflora	Rmu_co8369689.1_g000001 Rmu_sc0007173.1_g000009 Rmu_sc0012471.1_g000026
rosa_roxburghii	Rroxscaffold_4G00277320
rosa_rugosa	Rorug01G0441300 Rorug01G0441400 Rorug01G0441500 Rorug01G0441600
rosa_samantha	Rh1AG467200 Rh1BG424500 Rh1BG424600 Rh1CG437500 Rh1DG457200 Rh1DG457300
rosa_wichuraiana	Rw1G040540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	820
AccB1I	GGYRCC	1 cut(s)	230
AccB7I	CCANNNNNTGG	2 cut(s)	407, 1049
AccII	CGCG	2 cut(s)	23, 51
AciI	CCGC	3 cut(s)	271, 377, 489
AclWI	GGATC	3 cut(s)	45, 821, 1014
AcsI	RAATTY	1 cut(s)	722
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	2 cut(s)	43, 821
AfiI	CCNNNNNNNGG	5 cut(s)	60, 227, 407, 836, 1049
AjnI	CCWGG	1 cut(s)	924
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	7 cut(s)	128, 342, 358, 467, 788, 863, 1046
AluI	AGCT	7 cut(s)	128, 342, 358, 467, 788, 863, 1046
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	3 cut(s)	45, 821, 1014
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	509
ApeKI	GCWGC	2 cut(s)	575, 880
ApoI	RAATTY	1 cut(s)	722
AspLEI	GCGC	2 cut(s)	25, 53
AspS9I	GGNCC	2 cut(s)	677, 922
AsuC2I	CCSGG	3 cut(s)	221, 285, 952
AsuHPI	GGTGA	1 cut(s)	941
AsuII	TTCGAA	1 cut(s)	326
AvaII	GGWCC	2 cut(s)	677, 922
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	1042
BbsI	GAAGAC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	562, 892
BccI	CCATC	2 cut(s)	401, 913
BciT130I	CCWGG	1 cut(s)	926
BciVI	GTATCC	1 cut(s)	1069
BcnI	CCSGG	3 cut(s)	221, 285, 952
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	719
BfmI	CTRYAG	2 cut(s)	447, 505
BfuAI	ACCTGC	1 cut(s)	820
BfuI	GTATCC	1 cut(s)	1069
BisI	GCNGC	3 cut(s)	489, 576, 881
BlsI	GCNGC	3 cut(s)	490, 577, 882
Bme1390I	CCNGG	4 cut(s)	221, 285, 926, 952
Bme18I	GGWCC	2 cut(s)	677, 922
BmgT120I	GGNCC	2 cut(s)	677, 922
BmiI	GGNNCC	3 cut(s)	232, 709, 1041
BmrFI	CCNGG	4 cut(s)	221, 285, 926, 952
BmsI	GCATC	2 cut(s)	385, 552
BpiI	GAAGAC	1 cut(s)	342
BpmI	CTGGAG	2 cut(s)	384, 1026
Bpu14I	TTCGAA	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	619
BpuMI	CCSGG	3 cut(s)	221, 285, 952
BsaJI	CCNNGG	2 cut(s)	284, 925
BsaXI	ACNNNNNCTCC	2 cut(s)	754, 784
Bsc4I	CCNNNNNNNGG	5 cut(s)	60, 227, 407, 836, 1049
Bse118I	RCCGGY	2 cut(s)	25, 803
Bse1I	ACTGG	2 cut(s)	679, 745
BseBI	CCWGG	1 cut(s)	926
BseDI	CCNNGG	2 cut(s)	284, 925
BseGI	GGATG	4 cut(s)	75, 91, 412, 552
BseLI	CCNNNNNNNGG	5 cut(s)	60, 227, 407, 836, 1049
BseMII	CTCAG	2 cut(s)	459, 771
BseNI	ACTGG	2 cut(s)	679, 745
BseXI	GCAGC	2 cut(s)	562, 892
BsgI	GTGCAG	1 cut(s)	816
Bsh1236I	CGCG	2 cut(s)	23, 51
BshFI	GGCC	1 cut(s)	511
BshNI	GGYRCC	1 cut(s)	230
BsiSI	CCGG	5 cut(s)	26, 221, 284, 804, 951
BslI	CCNNNNNNNGG	5 cut(s)	60, 227, 407, 836, 1049
BsmAI	GTCTC	1 cut(s)	101
BsmBI	CGTCTC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	511
Bsp119I	TTCGAA	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	1042
Bsp143I	GATC	4 cut(s)	37, 826, 980, 1019
BspACI	CCGC	3 cut(s)	271, 377, 489
BspANI	GGCC	1 cut(s)	511
BspCNI	CTCAG	2 cut(s)	460, 772
BspFNI	CGCG	2 cut(s)	23, 51
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	3 cut(s)	232, 709, 1041
BspMAI	CTGCAG	1 cut(s)	451
BspMI	ACCTGC	1 cut(s)	820
BspPI	GGATC	3 cut(s)	45, 821, 1014
BspT104I	TTCGAA	1 cut(s)	326
BspT107I	GGYRCC	1 cut(s)	230
BsrFI	RCCGGY	2 cut(s)	25, 803
BsrI	ACTGG	2 cut(s)	679, 745
BssAI	RCCGGY	2 cut(s)	25, 803
BssECI	CCNNGG	2 cut(s)	284, 925
BssMI	GATC	4 cut(s)	37, 826, 980, 1019
Bst2UI	CCWGG	1 cut(s)	926
Bst4CI	ACNGT	2 cut(s)	707, 824
Bst6I	CTCTTC	7 cut(s)	59, 93, 531, 536, 552, 971, 1062
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstBI	TTCGAA	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	465, 498
BstDEI	CTNAG	2 cut(s)	468, 780
BstF5I	GGATG	4 cut(s)	75, 91, 412, 552
BstFNI	CGCG	2 cut(s)	23, 51
BstHHI	GCGC	2 cut(s)	25, 53
BstKTI	GATC	4 cut(s)	40, 829, 983, 1022
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	4 cut(s)	37, 826, 980, 1019
BstMWI	GCNNNNNNNGC	4 cut(s)	395, 485, 497, 794
BstNI	CCWGG	1 cut(s)	926
BstSCI	CCNGG	4 cut(s)	219, 283, 924, 950
BstSFI	CTRYAG	2 cut(s)	447, 505
BstUI	CGCG	2 cut(s)	23, 51
BstV1I	GCAGC	2 cut(s)	562, 892
BstV2I	GAAGAC	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	1069
BsuRI	GGCC	1 cut(s)	511
BtsCI	GGATG	4 cut(s)	75, 91, 412, 552
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	820
Cac8I	GCNNGC	2 cut(s)	465, 498
CaiI	CAGNNNCTG	1 cut(s)	170
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	2 cut(s)	25, 53
Cfr10I	RCCGGY	2 cut(s)	25, 803
Cfr13I	GGNCC	2 cut(s)	677, 922
CseI	GACGC	2 cut(s)	29, 581
Csp6I	GTAC	2 cut(s)	42, 820
CviAII	CATG	1 cut(s)	392
CviQI	GTAC	2 cut(s)	42, 820
DdeI	CTNAG	2 cut(s)	468, 780
DpnI	GATC	4 cut(s)	39, 828, 982, 1021
DpnII	GATC	4 cut(s)	37, 826, 980, 1019
DraI	TTTAAA	1 cut(s)	868
Eam1104I	CTCTTC	7 cut(s)	59, 93, 531, 536, 552, 971, 1062
EarI	CTCTTC	7 cut(s)	59, 93, 531, 536, 552, 971, 1062
Eco24I	GRGCYC	1 cut(s)	1042
Eco47I	GGWCC	2 cut(s)	677, 922
Eco57I	CTGAAG	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	722
EcoRII	CCWGG	1 cut(s)	924
EcoT38I	GRGCYC	1 cut(s)	1042
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	1 cut(s)	395
FaiI	YATR	9 cut(s)	159, 393, 507, 660, 672, 715, 849, 939, 1012
FalI	AAGNNNNNCTT	4 cut(s)	114, 146, 549, 581
FatI	CATG	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	489, 576, 881
FokI	GGATG	4 cut(s)	82, 98, 419, 559
FriOI	GRGCYC	1 cut(s)	1042
Fsp4HI	GCNGC	3 cut(s)	489, 576, 881
FspBI	CTAG	1 cut(s)	719
GlaI	GCGC	2 cut(s)	24, 52
GluI	GCNGC	3 cut(s)	489, 576, 881
GsuI	CTGGAG	2 cut(s)	384, 1026
HaeIII	GGCC	1 cut(s)	511
HapII	CCGG	5 cut(s)	26, 221, 284, 804, 951
HgaI	GACGC	2 cut(s)	29, 581
HhaI	GCGC	2 cut(s)	25, 53
Hin1II	CATG	1 cut(s)	395
Hin6I	GCGC	2 cut(s)	23, 51
HinP1I	GCGC	2 cut(s)	23, 51
HindIII	AAGCTT	1 cut(s)	861
HinfI	GANTC	4 cut(s)	8, 118, 550, 941
HpaII	CCGG	5 cut(s)	26, 221, 284, 804, 951
HphI	GGTGA	1 cut(s)	941
Hpy166II	GTNNAC	1 cut(s)	680
Hpy188I	TCNGA	2 cut(s)	751, 1066
Hpy188III	TCNNGA	9 cut(s)	35, 115, 122, 392, 401, 554, 569, 719, 779
Hpy8I	GTNNAC	1 cut(s)	680
HpyAV	CCTTC	4 cut(s)	221, 343, 407, 524
HpyCH4III	ACNGT	2 cut(s)	707, 824
HpyCH4IV	ACGT	3 cut(s)	110, 688, 1030
HpyCH4V	TGCA	7 cut(s)	449, 496, 658, 797, 851, 905, 1028
HpyF10VI	GCNNNNNNNGC	4 cut(s)	395, 485, 497, 794
HpyF3I	CTNAG	2 cut(s)	468, 780
HpySE526I	ACGT	3 cut(s)	110, 688, 1030
Hsp92II	CATG	1 cut(s)	395
HspAI	GCGC	2 cut(s)	23, 51
Kzo9I	GATC	4 cut(s)	37, 826, 980, 1019
LmnI	GCTCC	4 cut(s)	347, 403, 610, 1045
Lsp1109I	GCAGC	2 cut(s)	562, 892
LweI	GCATC	2 cut(s)	385, 552
MaeI	CTAG	1 cut(s)	719
MaeII	ACGT	3 cut(s)	110, 688, 1030
MaeIII	GTNAC	1 cut(s)	799
MalI	GATC	4 cut(s)	39, 828, 982, 1021
MboI	GATC	4 cut(s)	37, 826, 980, 1019
MhlI	GDGCHC	1 cut(s)	1042
MluCI	AATT	3 cut(s)	588, 722, 906
MlyI	GAGTC	2 cut(s)	2, 559
MseI	TTAA	3 cut(s)	132, 639, 867
MslI	CAYNNNNRTG	1 cut(s)	390
MspI	CCGG	5 cut(s)	26, 221, 284, 804, 951
MspR9I	CCNGG	4 cut(s)	221, 285, 926, 952
MvaI	CCWGG	1 cut(s)	926
MvnI	CGCG	2 cut(s)	23, 51
MwoI	GCNNNNNNNGC	4 cut(s)	395, 485, 497, 794
NciI	CCSGG	3 cut(s)	221, 285, 952
NdeII	GATC	4 cut(s)	37, 826, 980, 1019
NlaIII	CATG	1 cut(s)	395
NlaIV	GGNNCC	3 cut(s)	232, 709, 1041
NspV	TTCGAA	1 cut(s)	326
PagI	TCATGA	1 cut(s)	391
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 231
PfeI	GAWTC	2 cut(s)	118, 941
PflMI	CCANNNNNTGG	2 cut(s)	407, 1049
PfoI	TCCNGGA	1 cut(s)	950
PkrI	GCNGC	3 cut(s)	490, 577, 882
PleI	GAGTC	2 cut(s)	2, 558
PpsI	GAGTC	2 cut(s)	2, 558
Psp6I	CCWGG	1 cut(s)	924
PspGI	CCWGG	1 cut(s)	924
PspN4I	GGNNCC	3 cut(s)	232, 709, 1041
PspPI	GGNCC	2 cut(s)	677, 922
PstI	CTGCAG	1 cut(s)	451
PstNI	CAGNNNCTG	1 cut(s)	170
RsaI	GTAC	2 cut(s)	43, 821
RsaNI	GTAC	2 cut(s)	42, 820
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	3 cut(s)	132, 639, 867
SatI	GCNGC	3 cut(s)	489, 576, 881
Sau3AI	GATC	4 cut(s)	37, 826, 980, 1019
Sau96I	GGNCC	2 cut(s)	677, 922
SchI	GAGTC	2 cut(s)	2, 559
ScrFI	CCNGG	4 cut(s)	221, 285, 926, 952
SduI	GDGCHC	1 cut(s)	1042
SfaNI	GCATC	2 cut(s)	385, 552
SfcI	CTRYAG	2 cut(s)	447, 505
SfuI	TTCGAA	1 cut(s)	326
SgrAI	CRCCGGYG	1 cut(s)	25
SinI	GGWCC	2 cut(s)	677, 922
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	598
SmoI	CTYRAG	1 cut(s)	598
Sse9I	AATT	3 cut(s)	588, 722, 906
SsiI	CCGC	3 cut(s)	271, 377, 489
SspMI	CTAG	1 cut(s)	719
StyD4I	CCNGG	4 cut(s)	219, 283, 924, 950
TaaI	ACNGT	2 cut(s)	707, 824
TaiI	ACGT	3 cut(s)	113, 691, 1033
TaqI	TCGA	6 cut(s)	11, 96, 189, 201, 326, 1018
TasI	AATT	3 cut(s)	588, 722, 906
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	2 cut(s)	118, 941
Tru1I	TTAA	3 cut(s)	132, 639, 867
Tru9I	TTAA	3 cut(s)	132, 639, 867
TscAI	CASTG	1 cut(s)	456
TseI	GCWGC	2 cut(s)	575, 880
TspDTI	ATGAA	3 cut(s)	105, 174, 219
TspGWI	ACGGA	1 cut(s)	274
TspRI	CASTG	1 cut(s)	456
Van91I	CCANNNNNTGG	2 cut(s)	407, 1049
VpaK11BI	GGWCC	2 cut(s)	677, 922
XapI	RAATTY	1 cut(s)	722
XbaI	TCTAGA	1 cut(s)	718
XspI	CTAG	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.