Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006063

Physical Location & Seq

Genomic Coordinates Forward (+)

7211549 .. 7214331

Gene Structure 2783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1075300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGAAGTCCCCAAGGATGAGCCGCTGGCTGTTTTTCTGGATCGGACCTCACGCGCCACGAGAGGGAAGAGGATGACTAAGTTACTGGATGAGGAAATCGAAGAGGATGAGATGTTCTGGAATCAGGAGGCTCTCAAAGAGGATGAAGATGATGGAAACTATGAAGCAGAGCCTGAGGTTGCTGACGAATTTGATAGCGATTTTGATGAAGATGAGCCAGACCCTGACGAAGGAGCGGAAAACAACGACGCAGATGAGAGAGTGAGGACGAAGAAGCGGCTGATATATCCGGGAAAGCAATCGAGCAAGAAGAAGAAGAAGAAGAAGAAAGTGATATCGGAATTAGAATCCAAGGATGGAAATGAGAAGTCTTCTCATCCCGAACAACATCAGGATGCTCCTGAGGAAGCAGAAGTAGAGAGAACTGTGAGAAAATCTACTAGAACTTCAGTGGTTGTCCGTCAAGCTGAGAGGGACGCAATACGTGCGGCCTTGCAAGCAACCATGAAGCCGATTAAGAGAAAAAAGGAAGGCGAGGAGAAGAGGATGACTCAAGAAGAGATGCTCTTAGAAGCAGCTCAGACAGAAATTATGAACTTGAGAAATTTGGAGCGTGTTCTAGCGAGGGAGGAAGAAGTTAAGAAAAGAGCCATTGTACATAAGGCTGTCTATACTGGTCCACAAGTACGTTATTTTTCAAAAGATGGTAAGCTTTCGGCGTTACACTTTTCTAATCAAACTTGTTTGTTAGGAAAACAAGAGTCACCGTTTGCATATGCAGATTTTGTCATTTCAGTCAGAAATCTCTACCGCACCTACCCTGAGAAAGCTGTCTGTGCTGTTACTGGTTTACCTGCCAAGTACCGTGATCCAAAGACAGGGCTACCTTATGCAACAAAAGAAGCTTTTAACATCATTCGGCAACGTTTTCTACAGGAAAGTGGTAGGGTCAGGAAAGAGATGGACATGGGTGACTTGTACGGTTCACTTTCTGGTAAGGGGTTTTCTGCAAGGGGGAAGAGATCAGTGGCGTCAAATAACATCGATGCGTCGTATTCTCGATATTTTGCACGTTTCCGCAGAATTCCAGCTCTTGAAAGCGAATCATCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0034728 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043486 GO:0043933 GO:0044424 GO:0044464 GO:0051276 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YL1 YL1_C

Protein Analysis

372

Amino Acids

42.58

Weight (kDa)

6.08

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YL1	PF05764	15 - 233	7.9e-41	YL1 nuclear protein
YL1_C	PF08265	278 - 306	2.6e-15	YL1 nuclear protein C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36740 AT2G36740
fragaria_vesca	FvH4_7g33430 FvH4_7g33430 FvH4_7g33430 FvH4_7g33430
malus_domestica	MD07G1075300.v1.1 MD07G1304400.v1.1
prunus_persica	Prupe.2G323000_v2.0.a1
pyrus_communis	pycom07g05940
rosa_chinensis	RchiOBHm_Chr1g0383401
rosa_laevigata	RLG00000026104
rosa_multiflora	Rmu_co8369689.1_g000001 Rmu_sc0007173.1_g000009 Rmu_sc0012471.1_g000026
rosa_roxburghii	Rroxscaffold_4G00277320
rosa_rugosa	Rorug01G0441300 Rorug01G0441400 Rorug01G0441500 Rorug01G0441600
rosa_samantha	Rh1AG467200 Rh1BG424500 Rh1BG424600 Rh1CG437500 Rh1DG457200 Rh1DG457300
rosa_wichuraiana	Rw1G040540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	862
AccBSI	CCGCTC	1 cut(s)	236
AccII	CGCG	1 cut(s)	54
AciI	CCGC	6 cut(s)	23, 236, 277, 488, 811, 1078
AclI	AACGTT	1 cut(s)	925
AclWI	GGATC	2 cut(s)	48, 863
AcsI	RAATTY	3 cut(s)	188, 604, 1083
AcuI	CTGAAG	1 cut(s)	432
AcyI	GRCGYC	1 cut(s)	1031
AfaI	GTAC	4 cut(s)	657, 687, 863, 980
AfiI	CCNNNNNNNGG	3 cut(s)	63, 230, 878
AgsI	TTSAA	2 cut(s)	699, 1097
AloI	GAACNNNNNNTCC	2 cut(s)	98, 130
AluBI	AGCT	6 cut(s)	467, 578, 712, 830, 905, 1091
AluI	AGCT	6 cut(s)	467, 578, 712, 830, 905, 1091
AlwI	GGATC	2 cut(s)	48, 863
AlwNI	CAGNNNCTG	2 cut(s)	173, 224
AoxI	GGCC	1 cut(s)	489
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	3 cut(s)	188, 604, 1083
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	45, 677
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	756, 983
AvaII	GGWCC	2 cut(s)	45, 677
AxyI	CCTNAGG	2 cut(s)	174, 402
BauI	CACGAG	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	587
BccI	CCATC	4 cut(s)	146, 350, 698, 955
BcnI	CCSGG	1 cut(s)	291
BfaI	CTAG	2 cut(s)	441, 620
BfmI	CTRYAG	1 cut(s)	932
BfuAI	ACCTGC	1 cut(s)	862
BisI	GCNGC	4 cut(s)	23, 278, 489, 576
BlsI	GCNGC	4 cut(s)	24, 279, 490, 577
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	2 cut(s)	45, 677
BmgT120I	GGNCC	2 cut(s)	45, 677
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	3 cut(s)	385, 552, 1036
BpiI	GAAGAC	1 cut(s)	363
BplI	GAGNNNNNCTC	2 cut(s)	535, 567
BpuEI	CTTGAG	2 cut(s)	537, 619
BpuMI	CCSGG	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	1044
BsaAI	YACGTR	1 cut(s)	485
BsaHI	GRCGYC	1 cut(s)	1031
BsaJI	CCNNGG	2 cut(s)	12, 351
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 230, 878
Bse1I	ACTGG	3 cut(s)	90, 679, 850
Bse21I	CCTNAGG	2 cut(s)	174, 402
BseCI	ATCGAT	1 cut(s)	1044
BseDI	CCNNGG	2 cut(s)	12, 351
BseGI	GGATG	9 cut(s)	22, 78, 94, 112, 148, 361, 376, 400, 552
BseLI	CCNNNNNNNGG	3 cut(s)	63, 230, 878
BseMII	CTCAG	5 cut(s)	165, 393, 459, 593, 813
BseNI	ACTGG	3 cut(s)	90, 679, 850
BseRI	GAGGAG	1 cut(s)	551
BseXI	GCAGC	1 cut(s)	587
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	491
BshVI	ATCGAT	1 cut(s)	1044
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	3 cut(s)	63, 230, 878
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	1 cut(s)	491
Bsp1407I	TGTACA	1 cut(s)	655
Bsp143I	GATC	3 cut(s)	40, 868, 1022
BspACI	CCGC	6 cut(s)	23, 236, 277, 488, 811, 1078
BspANI	GGCC	1 cut(s)	491
BspCNI	CTCAG	5 cut(s)	166, 394, 460, 592, 814
BspDI	ATCGAT	1 cut(s)	1044
BspFNI	CGCG	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	862
BspPI	GGATC	2 cut(s)	48, 863
BsrBI	CCGCTC	1 cut(s)	236
BsrGI	TGTACA	1 cut(s)	655
BsrI	ACTGG	3 cut(s)	90, 679, 850
BssECI	CCNNGG	2 cut(s)	12, 351
BssMI	GATC	3 cut(s)	40, 868, 1022
BssNI	GRCGYC	1 cut(s)	1031
BssSI	CACGAG	1 cut(s)	58
BssT1I	CCWWGG	2 cut(s)	12, 351
Bst2BI	CACGAG	1 cut(s)	58
Bst4CI	ACNGT	4 cut(s)	427, 768, 866, 983
Bst6I	CTCTTC	5 cut(s)	62, 96, 536, 552, 1013
BstACI	GRCGYC	1 cut(s)	1031
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstAUI	TGTACA	1 cut(s)	655
BstBAI	YACGTR	1 cut(s)	485
BstC8I	GCNNGC	2 cut(s)	27, 498
BstDEI	CTNAG	7 cut(s)	78, 174, 402, 468, 568, 579, 822
BstENI	CCTNNNNNAGG	1 cut(s)	228
BstF5I	GGATG	9 cut(s)	22, 78, 94, 112, 148, 361, 376, 400, 552
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	3 cut(s)	43, 871, 1025
BstMBI	GATC	3 cut(s)	40, 868, 1022
BstMWI	GCNNNNNNNGC	3 cut(s)	485, 497, 836
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	932
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	587
BstV2I	GAAGAC	1 cut(s)	363
Bsu15I	ATCGAT	1 cut(s)	1044
Bsu36I	CCTNAGG	2 cut(s)	174, 402
BsuRI	GGCC	1 cut(s)	491
BsuTUI	ATCGAT	1 cut(s)	1044
BtsCI	GGATG	9 cut(s)	22, 78, 94, 112, 148, 361, 376, 400, 552
BtsIMutI	CAGTG	2 cut(s)	456, 1032
BveI	ACCTGC	1 cut(s)	862
Cac8I	GCNNGC	2 cut(s)	27, 498
CaiI	CAGNNNCTG	2 cut(s)	173, 224
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	2 cut(s)	45, 677
ClaI	ATCGAT	1 cut(s)	1044
CseI	GACGC	4 cut(s)	257, 485, 1020, 1038
Csp6I	GTAC	4 cut(s)	656, 686, 862, 979
CviAII	CATG	2 cut(s)	505, 967
CviQI	GTAC	4 cut(s)	656, 686, 862, 979
DdeI	CTNAG	7 cut(s)	78, 174, 402, 468, 568, 579, 822
DpnI	GATC	3 cut(s)	42, 870, 1024
DpnII	GATC	3 cut(s)	40, 868, 1022
Eam1104I	CTCTTC	5 cut(s)	62, 96, 536, 552, 1013
EarI	CTCTTC	5 cut(s)	62, 96, 536, 552, 1013
Eco130I	CCWWGG	2 cut(s)	12, 351
Eco32I	GATATC	1 cut(s)	336
Eco47I	GGWCC	2 cut(s)	45, 677
Eco57I	CTGAAG	1 cut(s)	432
Eco81I	CCTNAGG	2 cut(s)	174, 402
EcoNI	CCTNNNNNAGG	1 cut(s)	228
EcoRI	GAATTC	1 cut(s)	1083
EcoRV	GATATC	1 cut(s)	336
EcoT14I	CCWWGG	2 cut(s)	12, 351
ErhI	CCWWGG	2 cut(s)	12, 351
FaeI	CATG	2 cut(s)	508, 970
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	2 cut(s)	504, 966
FauNDI	CATATG	1 cut(s)	775
Fnu4HI	GCNGC	4 cut(s)	23, 278, 489, 576
FokI	GGATG	9 cut(s)	29, 85, 101, 119, 155, 363, 368, 407, 559
Fsp4HI	GCNGC	4 cut(s)	23, 278, 489, 576
FspBI	CTAG	2 cut(s)	441, 620
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	4 cut(s)	23, 278, 489, 576
HaeIII	GGCC	1 cut(s)	491
HapII	CCGG	1 cut(s)	290
HgaI	GACGC	4 cut(s)	257, 485, 1020, 1038
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	1031
Hin1II	CATG	2 cut(s)	508, 970
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HindIII	AAGCTT	2 cut(s)	710, 903
HinfI	GANTC	5 cut(s)	121, 347, 550, 761, 1103
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	2 cut(s)	756, 983
Hpy166II	GTNNAC	3 cut(s)	680, 851, 986
Hpy188I	TCNGA	5 cut(s)	45, 340, 582, 800, 1111
Hpy8I	GTNNAC	3 cut(s)	680, 851, 986
Hpy99I	CGWCG	2 cut(s)	251, 1054
HpyAV	CCTTC	2 cut(s)	224, 524
HpyCH4III	ACNGT	4 cut(s)	427, 768, 866, 983
HpyCH4IV	ACGT	4 cut(s)	484, 688, 925, 1072
HpyCH4V	TGCA	6 cut(s)	496, 773, 779, 893, 1010, 1070
HpyF10VI	GCNNNNNNNGC	3 cut(s)	485, 497, 836
HpyF3I	CTNAG	7 cut(s)	78, 174, 402, 468, 568, 579, 822
HpySE526I	ACGT	4 cut(s)	484, 688, 925, 1072
Hsp92I	GRCGYC	1 cut(s)	1031
Hsp92II	CATG	2 cut(s)	508, 970
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	3 cut(s)	40, 868, 1022
LmnI	GCTCC	3 cut(s)	233, 403, 610
Lsp1109I	GCAGC	1 cut(s)	587
LweI	GCATC	3 cut(s)	385, 552, 1036
MaeI	CTAG	2 cut(s)	441, 620
MaeII	ACGT	4 cut(s)	484, 688, 925, 1072
MaeIII	GTNAC	5 cut(s)	81, 720, 762, 841, 971
MalI	GATC	3 cut(s)	42, 870, 1024
MbiI	CCGCTC	1 cut(s)	236
MboI	GATC	3 cut(s)	40, 868, 1022
MluCI	AATT	5 cut(s)	188, 341, 588, 604, 1083
MlyI	GAGTC	2 cut(s)	544, 770
MseI	TTAA	3 cut(s)	516, 639, 909
MslI	CAYNNNNRTG	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	3 cut(s)	485, 497, 836
NciI	CCSGG	1 cut(s)	291
NdeI	CATATG	1 cut(s)	775
NdeII	GATC	3 cut(s)	40, 868, 1022
NlaIII	CATG	2 cut(s)	508, 970
NmuCI	GTSAC	2 cut(s)	762, 971
PfeI	GAWTC	3 cut(s)	121, 347, 1103
PfoI	TCCNGGA	1 cut(s)	289
PkrI	GCNGC	4 cut(s)	24, 279, 490, 577
PleI	GAGTC	2 cut(s)	544, 769
PpsI	GAGTC	2 cut(s)	544, 769
Ppu21I	YACGTR	1 cut(s)	485
Psp1406I	AACGTT	1 cut(s)	925
PspPI	GGNCC	2 cut(s)	45, 677
PstNI	CAGNNNCTG	2 cut(s)	173, 224
RsaI	GTAC	4 cut(s)	657, 687, 863, 980
RsaNI	GTAC	4 cut(s)	656, 686, 862, 979
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	3 cut(s)	516, 639, 909
SatI	GCNGC	4 cut(s)	23, 278, 489, 576
Sau3AI	GATC	3 cut(s)	40, 868, 1022
Sau96I	GGNCC	2 cut(s)	45, 677
SchI	GAGTC	2 cut(s)	544, 770
ScrFI	CCNGG	1 cut(s)	291
SfaNI	GCATC	3 cut(s)	385, 552, 1036
SfcI	CTRYAG	1 cut(s)	932
SinI	GGWCC	2 cut(s)	45, 677
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	2 cut(s)	552, 598
SmoI	CTYRAG	2 cut(s)	552, 598
Sse9I	AATT	5 cut(s)	188, 341, 588, 604, 1083
SsiI	CCGC	6 cut(s)	23, 236, 277, 488, 811, 1078
SspMI	CTAG	2 cut(s)	441, 620
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	12, 351
TaaI	ACNGT	4 cut(s)	427, 768, 866, 983
TaiI	ACGT	4 cut(s)	487, 691, 928, 1075
TaqI	TCGA	4 cut(s)	99, 302, 1044, 1060
TasI	AATT	5 cut(s)	188, 341, 588, 604, 1083
TatI	WGTACW	1 cut(s)	655
TauI	GCSGC	3 cut(s)	25, 280, 491
TfiI	GAWTC	3 cut(s)	121, 347, 1103
Tru1I	TTAA	3 cut(s)	516, 639, 909
Tru9I	TTAA	3 cut(s)	516, 639, 909
TscAI	CASTG	2 cut(s)	456, 1032
TseFI	GTSAC	2 cut(s)	762, 971
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	2 cut(s)	762, 971
TspDTI	ATGAA	5 cut(s)	159, 177, 222, 521, 608
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	2 cut(s)	456, 1032
VpaK11BI	GGWCC	2 cut(s)	45, 677
XagI	CCTNNNNNAGG	1 cut(s)	228
XapI	RAATTY	3 cut(s)	188, 604, 1083
XspI	CTAG	2 cut(s)	441, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.