Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006063

Physical Location & Seq

Genomic Coordinates Forward (+)

53896646 .. 53897367

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0441400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTGCAAGGTAATTGTTAAGCTTAAGTATGGAGATCTTGTTTCCATACTTCCAACCAATGTCACTGTAGTAGTATGGCCCGTTCAAATCTGGAGATTCAGTCTAAATATATCAACCATGAATACATTGGAAGCTCCAACTTGTCTACTCTATGCAGAGGATGCCTTACGAACTATGAGCTTACCTGAAGCATATACAGAGATTGTCTTGAATTTGCCATATAAGCTCTTCGGAAAATGCACAAAGAGTCCGCTTAATATCACACTTGTGAACGCAGCTGGATTTGTACAAAGCCATAGCAAAAATTGGTTTCGGGAAAAGGATAGCTCTCTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0034728 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043486 GO:0043933 GO:0044424 GO:0044464 GO:0051276 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YL1 YL1_C

Protein Analysis

112

Amino Acids

12.65

Weight (kDa)

8.84

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36740 AT2G36740
fragaria_vesca	FvH4_7g33430 FvH4_7g33430 FvH4_7g33430 FvH4_7g33430
malus_domestica	MD07G1075300.v1.1 MD07G1304400.v1.1
prunus_persica	Prupe.2G323000_v2.0.a1
pyrus_communis	pycom07g05940
rosa_chinensis	RchiOBHm_Chr1g0383401
rosa_laevigata	RLG00000026104
rosa_multiflora	Rmu_co8369689.1_g000001 Rmu_sc0007173.1_g000009 Rmu_sc0012471.1_g000026
rosa_roxburghii	Rroxscaffold_4G00277320
rosa_rugosa	Rorug01G0441300 Rorug01G0441400 Rorug01G0441500 Rorug01G0441600
rosa_samantha	Rh1AG467200 Rh1BG424500 Rh1BG424600 Rh1CG437500 Rh1DG457200 Rh1DG457300
rosa_wichuraiana	Rw1G040540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	145
AciI	CCGC	1 cut(s)	251
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	1 cut(s)	288
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	86, 211
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	6 cut(s)	22, 134, 180, 226, 278, 327
AluI	AGCT	6 cut(s)	22, 134, 180, 226, 278, 327
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	287
BfaI	CTAG	1 cut(s)	337
BfmI	CTRYAG	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	23
BglII	AGATCT	1 cut(s)	34
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	78
BmsI	GCATC	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	112
BsaXI	ACNNNNNCTCC	4 cut(s)	24, 54, 85, 115
BseGI	GGATG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	287
BshFI	GGCC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	79
Bsp1407I	TGTACA	1 cut(s)	286
Bsp143I	GATC	2 cut(s)	34, 333
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	1 cut(s)	79
BspQI	GCTCTTC	1 cut(s)	233
BspTI	CTTAAG	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	286
BssMI	GATC	2 cut(s)	34, 333
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	233
BstAFI	CTTAAG	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstAUI	TGTACA	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	2 cut(s)	37, 336
BstMBI	GATC	2 cut(s)	34, 333
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 223
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	287
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	8 cut(s)	22, 79, 134, 180, 226, 278, 294, 327
CviKI_1	RGCY	8 cut(s)	22, 79, 134, 180, 226, 278, 294, 327
CviQI	GTAC	1 cut(s)	287
DpnI	GATC	2 cut(s)	36, 335
DpnII	GATC	2 cut(s)	34, 333
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	207
FaeI	CATG	1 cut(s)	121
FatI	CATG	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	1 cut(s)	337
GluI	GCNGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	79
Hin1II	CATG	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	2 cut(s)	96, 247
Hpy166II	GTNNAC	2 cut(s)	146, 271
Hpy188I	TCNGA	2 cut(s)	233, 333
Hpy188III	TCNNGA	3 cut(s)	91, 208, 314
Hpy8I	GTNNAC	2 cut(s)	146, 271
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	6, 155, 240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 223
Hsp92II	CATG	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	34, 333
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	3 cut(s)	76, 198, 264
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	337
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	2 cut(s)	36, 335
MboI	GATC	2 cut(s)	34, 333
MboII	GAAGA	1 cut(s)	220
MflI	RGATCY	1 cut(s)	34
MluCI	AATT	3 cut(s)	12, 211, 304
MlyI	GAGTC	1 cut(s)	256
MmeI	TCCRAC	2 cut(s)	77, 161
MnlI	CCTC	1 cut(s)	151
MseI	TTAA	3 cut(s)	18, 24, 255
MslI	CAYNNNNRTG	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	278
MspCI	CTTAAG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	161, 223
NdeII	GATC	2 cut(s)	34, 333
NlaIII	CATG	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	78
PsrI	GAACNNNNNNTAC	2 cut(s)	66, 98
PsuI	RGATCY	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	3 cut(s)	18, 24, 255
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	2 cut(s)	34, 333
Sau96I	GGNCC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	256
SetI	ASST	8 cut(s)	12, 24, 136, 182, 187, 228, 280, 329
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	3 cut(s)	12, 211, 304
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	67
TasI	AATT	3 cut(s)	12, 211, 304
TatI	WGTACW	1 cut(s)	286
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	3 cut(s)	18, 24, 255
Tru9I	TTAA	3 cut(s)	18, 24, 255
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	70
Vha464I	CTTAAG	1 cut(s)	23
XapI	RAATTY	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	145
XspI	CTAG	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.