Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006063

Physical Location & Seq

Genomic Coordinates Forward (+)

36177421 .. 36188864

Gene Structure 11444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1304400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGAGGTCCCAATGGATGAGCCGCCGGCTGTTTTTCTCGATCGGACCTCACGCGCCACCAGAGGGAAGAGGATGACTAAGTTACTCGATGAGGAAATCGAAGAGGATGAGATGTTCTGGAATCAGGAGGCTCTCAAAGAGGATGAAGATGATGGAAACTATGAAGCAGAGCCTGAGGTTGCTGACGAGTTTGATAGTGATTTCGACGAAGATGAGCCAGACCCCGACGAAGGAGCGGAAAACAACGACGCAGATGAGAGAGTTAGGACGAAGAAGCGGCTGATATATCCGGGAAAGCAATCGAGCAAGAAGAAGAAGAAGAGAGTTCTATCGGAACTAAAATCCAAGGATGGAAGTGAGAAGTCTTCTCATCCCGAACAACATCAGGATGCTCCTGAGGAAGCAGAAGTAGAGAGAACTGTTAGAAAATCTACAAGAACTTCAGTGGTTGTCCGTCAAGCTGAGAGGGACGCAATACGTGCGGCTTTGCAAGCAACCATGAAGCCGATTAAGAGGAAAAAGGAAGGTGAGGAGAAGAGGATGACCCAAGAAGAGATGCTCTTAGAAGCAGCTCAAACAGAAATTATGAACTTGAGAAATTTGGAGCGTGTTCTAGCAAGGGAGGAAGAAGTAAAGAAAAGAGCAATTGTACATAAGGCTGTCTATACTGGTCCACAAGTACGTTATTTCTCAAAAGATGGCCGCTCATATCTGGAATTCAGTAGAGGATTGTCATTTCAGTCAGAAATCTCTACCGCGCCTGTTCCCTACCCTGAGAAAGCTGTCTGTGCTGTTACTGGTTTACCTGCCAAGTACCGTGATCCAAAGACAGGGCTACCTTATGCAACAAAAGAAGCTTTTAACATCATTCGCCAACGTTTTCTACAGGAAAGTGGTAGGGTCAGAAAAGAAATGGACCTGGGTGACTTGTATGATTCACTTTCTGGTAAGGGGTTTTCGGCAAGGCAGAAGAGATCCGTGGCGTCCAATAACATGGATGTGTCGTACTCTCAATATTTTGCACGCTTCCGCAGAATTCCAGCTCTTGAAAGCGAATCTTCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0034728 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043486 GO:0043933 GO:0044424 GO:0044464 GO:0051276 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YL1 YL1_C

Protein Analysis

356

Amino Acids

40.79

Weight (kDa)

5.42

Isoelectric Point (pI)

57.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YL1	PF05764	15 - 231	2.1e-40	YL1 nuclear protein
YL1_C	PF08265	262 - 290	2.5e-15	YL1 nuclear protein C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36740 AT2G36740
fragaria_vesca	FvH4_7g33430 FvH4_7g33430 FvH4_7g33430 FvH4_7g33430
malus_domestica	MD07G1075300.v1.1 MD07G1304400.v1.1
prunus_persica	Prupe.2G323000_v2.0.a1
pyrus_communis	pycom07g05940
rosa_chinensis	RchiOBHm_Chr1g0383401
rosa_laevigata	RLG00000026104
rosa_multiflora	Rmu_co8369689.1_g000001 Rmu_sc0007173.1_g000009 Rmu_sc0012471.1_g000026
rosa_roxburghii	Rroxscaffold_4G00277320
rosa_rugosa	Rorug01G0441300 Rorug01G0441400 Rorug01G0441500 Rorug01G0441600
rosa_samantha	Rh1AG467200 Rh1BG424500 Rh1BG424600 Rh1CG437500 Rh1DG457200 Rh1DG457300
rosa_wichuraiana	Rw1G040540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	814
AccBSI	CCGCTC	2 cut(s)	236, 705
AccII	CGCG	2 cut(s)	54, 758
AciI	CCGC	7 cut(s)	23, 236, 277, 482, 703, 756, 1030
AclI	AACGTT	1 cut(s)	877
AclWI	GGATC	2 cut(s)	815, 969
AcoI	YGGCCR	1 cut(s)	700
AcsI	RAATTY	3 cut(s)	598, 716, 1035
AcuI	CTGAAG	1 cut(s)	426
AcyI	GRCGYC	1 cut(s)	983
AfaI	GTAC	4 cut(s)	651, 681, 815, 1007
AfiI	CCNNNNNNNGG	3 cut(s)	63, 230, 830
AgsI	TTSAA	1 cut(s)	1049
AjnI	CCWGG	1 cut(s)	918
AloI	GAACNNNNNNTCC	2 cut(s)	98, 130
AluBI	AGCT	5 cut(s)	461, 572, 782, 857, 1043
AluI	AGCT	5 cut(s)	461, 572, 782, 857, 1043
AlwI	GGATC	2 cut(s)	815, 969
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	1 cut(s)	700
ApeKI	GCWGC	1 cut(s)	569
ApoI	RAATTY	3 cut(s)	598, 716, 1035
AspLEI	GCGC	2 cut(s)	56, 760
AspS9I	GGNCC	4 cut(s)	7, 45, 671, 916
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	539, 935
AvaII	GGWCC	4 cut(s)	7, 45, 671, 916
AxyI	CCTNAGG	2 cut(s)	174, 396
BbsI	GAAGAC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	581
BccI	CCATC	3 cut(s)	146, 344, 692
BciT130I	CCWGG	1 cut(s)	920
BcnI	CCSGG	1 cut(s)	291
BfaI	CTAG	1 cut(s)	614
BfmI	CTRYAG	1 cut(s)	884
BfuAI	ACCTGC	1 cut(s)	814
BisI	GCNGC	5 cut(s)	23, 278, 483, 570, 703
BlsI	GCNGC	5 cut(s)	24, 279, 484, 571, 704
Bme1390I	CCNGG	2 cut(s)	291, 920
Bme18I	GGWCC	4 cut(s)	7, 45, 671, 916
BmgT120I	GGNCC	4 cut(s)	7, 45, 671, 916
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	2 cut(s)	291, 920
BmsI	GCATC	2 cut(s)	379, 546
BpiI	GAAGAC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	613
BpuMI	CCSGG	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	983
BsaJI	CCNNGG	3 cut(s)	345, 919, 978
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 230, 830
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	2 cut(s)	673, 802
Bse21I	CCTNAGG	2 cut(s)	174, 396
BseBI	CCWGG	1 cut(s)	920
BseDI	CCNNGG	3 cut(s)	345, 919, 978
BseGI	GGATG	9 cut(s)	22, 78, 112, 148, 355, 370, 394, 546, 1003
BseLI	CCNNNNNNNGG	3 cut(s)	63, 230, 830
BseMII	CTCAG	4 cut(s)	165, 387, 453, 765
BseNI	ACTGG	2 cut(s)	673, 802
BseRI	GAGGAG	1 cut(s)	545
BseXI	GCAGC	1 cut(s)	581
Bsh1236I	CGCG	2 cut(s)	54, 758
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	702
BsiEI	CGRYCG	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	26, 290
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	3 cut(s)	63, 230, 830
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	702
Bsp1407I	TGTACA	1 cut(s)	649
Bsp143I	GATC	3 cut(s)	40, 820, 974
BspACI	CCGC	7 cut(s)	23, 236, 277, 482, 703, 756, 1030
BspANI	GGCC	1 cut(s)	702
BspCNI	CTCAG	4 cut(s)	166, 388, 454, 766
BspFNI	CGCG	2 cut(s)	54, 758
BspLI	GGNNCC	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	814
BspPI	GGATC	2 cut(s)	815, 969
BsrBI	CCGCTC	2 cut(s)	236, 705
BsrFI	RCCGGY	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	649
BsrI	ACTGG	2 cut(s)	673, 802
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	3 cut(s)	345, 919, 978
BssMI	GATC	3 cut(s)	40, 820, 974
BssNI	GRCGYC	1 cut(s)	983
BssT1I	CCWWGG	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	920
Bst4CI	ACNGT	2 cut(s)	421, 818
Bst6I	CTCTTC	6 cut(s)	62, 96, 314, 530, 546, 965
BstACI	GRCGYC	1 cut(s)	983
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstAUI	TGTACA	1 cut(s)	649
BstBAI	YACGTR	1 cut(s)	479
BstC8I	GCNNGC	3 cut(s)	27, 492, 1024
BstDEI	CTNAG	6 cut(s)	78, 174, 396, 462, 562, 774
BstDSI	CCRYGG	1 cut(s)	978
BstF5I	GGATG	9 cut(s)	22, 78, 112, 148, 355, 370, 394, 546, 1003
BstFNI	CGCG	2 cut(s)	54, 758
BstHHI	GCGC	2 cut(s)	56, 760
BstKTI	GATC	3 cut(s)	43, 823, 977
BstMBI	GATC	3 cut(s)	40, 820, 974
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	3 cut(s)	479, 491, 788
BstNI	CCWGG	1 cut(s)	920
BstSCI	CCNGG	2 cut(s)	289, 918
BstSFI	CTRYAG	1 cut(s)	884
BstUI	CGCG	2 cut(s)	54, 758
BstV1I	GCAGC	1 cut(s)	581
BstV2I	GAAGAC	1 cut(s)	357
BstX2I	RGATCY	1 cut(s)	974
BstXI	CCANNNNNNTGG	1 cut(s)	994
BstYI	RGATCY	1 cut(s)	974
Bsu36I	CCTNAGG	2 cut(s)	174, 396
BsuRI	GGCC	1 cut(s)	702
BtgI	CCRYGG	1 cut(s)	978
BtsCI	GGATG	9 cut(s)	22, 78, 112, 148, 355, 370, 394, 546, 1003
BtsIMutI	CAGTG	1 cut(s)	450
BveI	ACCTGC	1 cut(s)	814
Cac8I	GCNNGC	3 cut(s)	27, 492, 1024
CaiI	CAGNNNCTG	1 cut(s)	173
CfoI	GCGC	2 cut(s)	56, 760
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	4 cut(s)	7, 45, 671, 916
CseI	GACGC	3 cut(s)	257, 479, 972
Csp6I	GTAC	4 cut(s)	650, 680, 814, 1006
CviAII	CATG	2 cut(s)	499, 994
CviQI	GTAC	4 cut(s)	650, 680, 814, 1006
DdeI	CTNAG	6 cut(s)	78, 174, 396, 462, 562, 774
DpnI	GATC	3 cut(s)	42, 822, 976
DpnII	GATC	3 cut(s)	40, 820, 974
EaeI	YGGCCR	1 cut(s)	700
Eam1104I	CTCTTC	6 cut(s)	62, 96, 314, 530, 546, 965
EarI	CTCTTC	6 cut(s)	62, 96, 314, 530, 546, 965
Eco130I	CCWWGG	1 cut(s)	345
Eco47I	GGWCC	4 cut(s)	7, 45, 671, 916
Eco57I	CTGAAG	1 cut(s)	426
Eco81I	CCTNAGG	2 cut(s)	174, 396
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRI	GAATTC	2 cut(s)	716, 1035
EcoRII	CCWGG	1 cut(s)	918
EcoT14I	CCWWGG	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	2 cut(s)	502, 997
FalI	AAGNNNNNCTT	1 cut(s)	1042
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	2 cut(s)	498, 993
Fnu4HI	GCNGC	5 cut(s)	23, 278, 483, 570, 703
FokI	GGATG	9 cut(s)	29, 85, 119, 155, 357, 362, 401, 553, 1010
Fsp4HI	GCNGC	5 cut(s)	23, 278, 483, 570, 703
FspBI	CTAG	1 cut(s)	614
GlaI	GCGC	2 cut(s)	55, 759
GluI	GCNGC	5 cut(s)	23, 278, 483, 570, 703
HaeIII	GGCC	1 cut(s)	702
HapII	CCGG	2 cut(s)	26, 290
HgaI	GACGC	3 cut(s)	257, 479, 972
HhaI	GCGC	2 cut(s)	56, 760
Hin1I	GRCGYC	1 cut(s)	983
Hin1II	CATG	2 cut(s)	502, 997
Hin6I	GCGC	2 cut(s)	54, 758
HinP1I	GCGC	2 cut(s)	54, 758
HindIII	AAGCTT	1 cut(s)	855
HinfI	GANTC	3 cut(s)	121, 935, 1055
HpaII	CCGG	2 cut(s)	26, 290
HphI	GGTGA	2 cut(s)	539, 935
Hpy166II	GTNNAC	2 cut(s)	674, 803
Hpy188I	TCNGA	5 cut(s)	45, 334, 745, 905, 1063
Hpy188III	TCNNGA	8 cut(s)	38, 118, 125, 374, 386, 395, 713, 1046
Hpy8I	GTNNAC	2 cut(s)	674, 803
Hpy99I	CGWCG	3 cut(s)	209, 230, 251
HpyAV	CCTTC	2 cut(s)	224, 518
HpyCH4III	ACNGT	2 cut(s)	421, 818
HpyCH4IV	ACGT	3 cut(s)	478, 682, 877
HpyCH4V	TGCA	3 cut(s)	490, 845, 1022
HpyF10VI	GCNNNNNNNGC	3 cut(s)	479, 491, 788
HpyF3I	CTNAG	6 cut(s)	78, 174, 396, 462, 562, 774
HpySE526I	ACGT	3 cut(s)	478, 682, 877
Hsp92I	GRCGYC	1 cut(s)	983
Hsp92II	CATG	2 cut(s)	502, 997
HspAI	GCGC	2 cut(s)	54, 758
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	40, 820, 974
LmnI	GCTCC	3 cut(s)	233, 397, 604
Lsp1109I	GCAGC	1 cut(s)	581
LweI	GCATC	2 cut(s)	379, 546
MaeI	CTAG	1 cut(s)	614
MaeII	ACGT	3 cut(s)	478, 682, 877
MaeIII	GTNAC	3 cut(s)	81, 793, 923
MalI	GATC	3 cut(s)	42, 822, 976
MbiI	CCGCTC	2 cut(s)	236, 705
MboI	GATC	3 cut(s)	40, 820, 974
MfeI	CAATTG	1 cut(s)	645
MflI	RGATCY	1 cut(s)	974
MluCI	AATT	5 cut(s)	582, 598, 645, 716, 1035
MroNI	GCCGGC	1 cut(s)	25
MseI	TTAA	2 cut(s)	510, 861
MslI	CAYNNNNRTG	2 cut(s)	387, 998
MspI	CCGG	2 cut(s)	26, 290
MspR9I	CCNGG	2 cut(s)	291, 920
MunI	CAATTG	1 cut(s)	645
MvaI	CCWGG	1 cut(s)	920
MvnI	CGCG	2 cut(s)	54, 758
MwoI	GCNNNNNNNGC	3 cut(s)	479, 491, 788
NaeI	GCCGGC	1 cut(s)	27
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	3 cut(s)	40, 820, 974
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	2 cut(s)	502, 997
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	923
PdiI	GCCGGC	1 cut(s)	27
PfeI	GAWTC	3 cut(s)	121, 935, 1055
PfoI	TCCNGGA	1 cut(s)	289
PkrI	GCNGC	5 cut(s)	24, 279, 484, 571, 704
Ple19I	CGATCG	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	479
PpuMI	RGGWCCY	1 cut(s)	7
Psp1406I	AACGTT	1 cut(s)	877
Psp5II	RGGWCCY	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	918
PspGI	CCWGG	1 cut(s)	918
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	4 cut(s)	7, 45, 671, 916
PspPPI	RGGWCCY	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	974
PvuI	CGATCG	1 cut(s)	43
RsaI	GTAC	4 cut(s)	651, 681, 815, 1007
RsaNI	GTAC	4 cut(s)	650, 680, 814, 1006
RseI	CAYNNNNRTG	2 cut(s)	387, 998
SaqAI	TTAA	2 cut(s)	510, 861
SatI	GCNGC	5 cut(s)	23, 278, 483, 570, 703
Sau3AI	GATC	3 cut(s)	40, 820, 974
Sau96I	GGNCC	4 cut(s)	7, 45, 671, 916
ScrFI	CCNGG	2 cut(s)	291, 920
SfaNI	GCATC	2 cut(s)	379, 546
SfcI	CTRYAG	1 cut(s)	884
SinI	GGWCC	4 cut(s)	7, 45, 671, 916
SmiMI	CAYNNNNRTG	2 cut(s)	387, 998
SmlI	CTYRAG	1 cut(s)	592
SmoI	CTYRAG	1 cut(s)	592
Sse9I	AATT	5 cut(s)	582, 598, 645, 716, 1035
SsiI	CCGC	7 cut(s)	23, 236, 277, 482, 703, 756, 1030
SspI	AATATT	1 cut(s)	1016
SspMI	CTAG	1 cut(s)	614
StyD4I	CCNGG	2 cut(s)	289, 918
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	2 cut(s)	421, 818
TaiI	ACGT	3 cut(s)	481, 685, 880
TaqI	TCGA	5 cut(s)	39, 87, 99, 204, 302
TasI	AATT	5 cut(s)	582, 598, 645, 716, 1035
TatI	WGTACW	1 cut(s)	649
TauI	GCSGC	4 cut(s)	25, 280, 485, 705
TfiI	GAWTC	3 cut(s)	121, 935, 1055
Tru1I	TTAA	2 cut(s)	510, 861
Tru9I	TTAA	2 cut(s)	510, 861
TscAI	CASTG	1 cut(s)	450
TseFI	GTSAC	1 cut(s)	923
TseI	GCWGC	1 cut(s)	569
Tsp45I	GTSAC	1 cut(s)	923
TspDTI	ATGAA	4 cut(s)	159, 177, 515, 602
TspGWI	ACGGA	2 cut(s)	443, 967
TspRI	CASTG	1 cut(s)	450
VpaK11BI	GGWCC	4 cut(s)	7, 45, 671, 916
XapI	RAATTY	3 cut(s)	598, 716, 1035
XspI	CTAG	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.