Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8369689.1

Orthogroup ID

OG0006063

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 964

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8369689.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 560 bp

ttgctgatgtgtttgatagcgatttcgatgaagatgagcctgacccggacgaaggcgcagaagacaatgagggagaggaaagacggacgaagaagcggttgaaatttccggggaagcagccaagcaagaagaagaagataaaagtgctttcgaagatagaagacagctccaagaatgaaaagccgaaatcttcttctaaaactgaacagcatcatcatgatgcgcctgaggatggagaaggggagagaagtgtgaggaaatctacgagaactgcagtggttgttaggcaagctgagagagaggcaaatcgtgctgctttgcaagcaaccatgaggccgataaagagaaaaaaggaaggcgaagagaagaggatgagccaggaagagatgcttctggaagctgctcaaacagaaattatcaacttgaggaatttggaacgtgttctagcaagggaggaagaagttaagaagcgagcaattgtgcataaggctgtctatactggtccacaactacgttatttttcaaaagatggtaagctttctgtcattactttattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0034728 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043486 GO:0043933 GO:0044424 GO:0044464 GO:0051276 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YL1 YL1_C

Protein Analysis

185

Amino Acids

21.26

Weight (kDa)

8.93

Isoelectric Point (pI)

58.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36740 AT2G36740
fragaria_vesca	FvH4_7g33430 FvH4_7g33430 FvH4_7g33430 FvH4_7g33430
malus_domestica	MD07G1075300.v1.1 MD07G1304400.v1.1
prunus_persica	Prupe.2G323000_v2.0.a1
pyrus_communis	pycom07g05940
rosa_chinensis	RchiOBHm_Chr1g0383401
rosa_laevigata	RLG00000026104
rosa_multiflora	Rmu_co8369689.1_g000001 Rmu_sc0007173.1_g000009 Rmu_sc0012471.1_g000026
rosa_roxburghii	Rroxscaffold_4G00277320
rosa_rugosa	Rorug01G0441300 Rorug01G0441400 Rorug01G0441500 Rorug01G0441600
rosa_samantha	Rh1AG467200 Rh1BG424500 Rh1BG424600 Rh1CG437500 Rh1DG457200 Rh1DG457300
rosa_wichuraiana	Rw1G040540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	96
AcsI	RAATTY	2 cut(s)	103, 429
AfiI	CCNNNNNNNGG	2 cut(s)	52, 232
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	102, 524
AjnI	CCWGG	1 cut(s)	377
AluBI	AGCT	4 cut(s)	167, 292, 400, 537
AluI	AGCT	4 cut(s)	167, 292, 400, 537
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	3 cut(s)	117, 313, 400
ApoI	RAATTY	2 cut(s)	103, 429
Asp700I	GAANNNNTTC	1 cut(s)	440
AspLEI	GCGC	2 cut(s)	58, 225
AspS9I	GGNCC	1 cut(s)	502
AsuC2I	CCSGG	2 cut(s)	46, 110
AsuII	TTCGAA	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	502
AxyI	CCTNAGG	1 cut(s)	227
BbsI	GAAGAC	2 cut(s)	68, 167
BbvI	GCAGC	3 cut(s)	129, 300, 387
BccI	CCATC	2 cut(s)	226, 523
BciT130I	CCWGG	1 cut(s)	379
BcnI	CCSGG	2 cut(s)	46, 110
BfaI	CTAG	1 cut(s)	445
BfmI	CTRYAG	1 cut(s)	272
BisI	GCNGC	3 cut(s)	118, 314, 401
BlsI	GCNGC	3 cut(s)	119, 315, 402
Bme1390I	CCNGG	3 cut(s)	46, 110, 379
Bme18I	GGWCC	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	502
BmrFI	CCNGG	3 cut(s)	46, 110, 379
BmsI	GCATC	3 cut(s)	210, 219, 377
BpiI	GAAGAC	2 cut(s)	68, 167
Bpu14I	TTCGAA	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	444
BpuMI	CCSGG	2 cut(s)	46, 110
BsaJI	CCNNGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 232
Bse1I	ACTGG	1 cut(s)	504
Bse21I	CCTNAGG	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	2 cut(s)	237, 377
BseLI	CCNNNNNNNGG	2 cut(s)	52, 232
BseMII	CTCAG	2 cut(s)	218, 284
BseNI	ACTGG	1 cut(s)	504
BseXI	GCAGC	3 cut(s)	129, 300, 387
BshFI	GGCC	1 cut(s)	336
BsiSI	CCGG	2 cut(s)	46, 109
BslI	CCNNNNNNNGG	2 cut(s)	52, 232
BsnI	GGCC	1 cut(s)	336
Bsp119I	TTCGAA	1 cut(s)	151
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	336
BspCNI	CTCAG	2 cut(s)	219, 285
BspHI	TCATGA	1 cut(s)	216
BspMAI	CTGCAG	1 cut(s)	276
BspT104I	TTCGAA	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	504
BssECI	CCNNGG	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	379
Bst6I	CTCTTC	3 cut(s)	356, 361, 377
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstBI	TTCGAA	1 cut(s)	151
BstC8I	GCNNGC	3 cut(s)	290, 323, 473
BstDEI	CTNAG	2 cut(s)	227, 293
BstF5I	GGATG	2 cut(s)	237, 377
BstHHI	GCGC	2 cut(s)	58, 225
BstMWI	GCNNNNNNNGC	2 cut(s)	310, 322
BstNI	CCWGG	1 cut(s)	379
BstSCI	CCNGG	3 cut(s)	44, 108, 377
BstSFI	CTRYAG	1 cut(s)	272
BstV1I	GCAGC	3 cut(s)	129, 300, 387
BstV2I	GAAGAC	2 cut(s)	68, 167
Bsu36I	CCTNAGG	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	336
BtsCI	GGATG	2 cut(s)	237, 377
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	1 cut(s)	281
Cac8I	GCNNGC	3 cut(s)	290, 323, 473
CciI	TCATGA	1 cut(s)	216
CfoI	GCGC	2 cut(s)	58, 225
Cfr13I	GGNCC	1 cut(s)	502
CviAII	CATG	2 cut(s)	217, 330
DdeI	CTNAG	2 cut(s)	227, 293
Eam1104I	CTCTTC	3 cut(s)	356, 361, 377
EarI	CTCTTC	3 cut(s)	356, 361, 377
Eco47I	GGWCC	1 cut(s)	502
Eco81I	CCTNAGG	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	377
FaeI	CATG	2 cut(s)	220, 333
FaiI	YATR	4 cut(s)	218, 331, 485, 497
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FatI	CATG	2 cut(s)	216, 329
Fnu4HI	GCNGC	3 cut(s)	118, 314, 401
FokI	GGATG	2 cut(s)	244, 384
Fsp4HI	GCNGC	3 cut(s)	118, 314, 401
FspBI	CTAG	1 cut(s)	445
GlaI	GCGC	2 cut(s)	57, 224
GluI	GCNGC	3 cut(s)	118, 314, 401
HaeIII	GGCC	1 cut(s)	336
HapII	CCGG	2 cut(s)	46, 109
HhaI	GCGC	2 cut(s)	58, 225
Hin1II	CATG	2 cut(s)	220, 333
Hin6I	GCGC	2 cut(s)	56, 223
HinP1I	GCGC	2 cut(s)	56, 223
HindIII	AAGCTT	1 cut(s)	535
HpaII	CCGG	2 cut(s)	46, 109
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	1 cut(s)	559
Hpy188III	TCNNGA	2 cut(s)	217, 394
Hpy8I	GTNNAC	1 cut(s)	505
HpyAV	CCTTC	3 cut(s)	46, 232, 349
HpyCH4IV	ACGT	2 cut(s)	438, 513
HpyCH4V	TGCA	3 cut(s)	274, 321, 483
HpyF10VI	GCNNNNNNNGC	2 cut(s)	310, 322
HpyF3I	CTNAG	2 cut(s)	227, 293
HpySE526I	ACGT	2 cut(s)	438, 513
Hsp92II	CATG	2 cut(s)	220, 333
HspAI	GCGC	2 cut(s)	56, 223
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	8 cut(s)	53, 59, 122, 239, 364, 379, 391, 485
Lsp1109I	GCAGC	3 cut(s)	129, 300, 387
LweI	GCATC	3 cut(s)	210, 219, 377
MaeI	CTAG	1 cut(s)	445
MaeII	ACGT	2 cut(s)	438, 513
MfeI	CAATTG	1 cut(s)	476
MluCI	AATT	4 cut(s)	103, 413, 429, 476
MnlI	CCTC	9 cut(s)	63, 69, 222, 248, 294, 326, 362, 419, 447
MroXI	GAANNNNTTC	1 cut(s)	440
MseI	TTAA	1 cut(s)	464
MslI	CAYNNNNRTG	2 cut(s)	215, 218
MspI	CCGG	2 cut(s)	46, 109
MspR9I	CCNGG	3 cut(s)	46, 110, 379
MunI	CAATTG	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	379
MwoI	GCNNNNNNNGC	2 cut(s)	310, 322
NciI	CCSGG	2 cut(s)	46, 110
NlaIII	CATG	2 cut(s)	220, 333
NspV	TTCGAA	1 cut(s)	151
PagI	TCATGA	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	440
PkrI	GCNGC	3 cut(s)	119, 315, 402
Psp6I	CCWGG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	377
PspPI	GGNCC	1 cut(s)	502
PstI	CTGCAG	1 cut(s)	276
RseI	CAYNNNNRTG	2 cut(s)	215, 218
SaqAI	TTAA	1 cut(s)	464
SatI	GCNGC	3 cut(s)	118, 314, 401
Sau96I	GGNCC	1 cut(s)	502
ScrFI	CCNGG	3 cut(s)	46, 110, 379
SetI	ASST	6 cut(s)	169, 294, 402, 441, 516, 539
SfaNI	GCATC	3 cut(s)	210, 219, 377
SfcI	CTRYAG	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	151
SinI	GGWCC	1 cut(s)	502
SmiMI	CAYNNNNRTG	2 cut(s)	215, 218
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
Sse9I	AATT	4 cut(s)	103, 413, 429, 476
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	1 cut(s)	445
StyD4I	CCNGG	3 cut(s)	44, 108, 377
TaiI	ACGT	2 cut(s)	441, 516
TaqI	TCGA	2 cut(s)	26, 151
TasI	AATT	4 cut(s)	103, 413, 429, 476
Tru1I	TTAA	1 cut(s)	464
Tru9I	TTAA	1 cut(s)	464
TscAI	CASTG	1 cut(s)	281
TseI	GCWGC	3 cut(s)	117, 313, 400
TspDTI	ATGAA	2 cut(s)	44, 191
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	502
XapI	RAATTY	2 cut(s)	103, 429
XmnI	GAANNNNTTC	1 cut(s)	440
XspI	CTAG	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.