Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012471.1

Orthogroup ID

OG0006063

Physical Location & Seq

Genomic Coordinates Reverse (-)

104059 .. 106476

Gene Structure 2418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012471.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

atggaggacccgaaagatgacccggccgtgtttctggatcgcacctcacgcgccaccagagggaagaggatgacgaagttactggatgaagaaatcgaagaggacgagacgttctggaatcaagaggcgcttaaagacgaggaagaagatgataactatgaagcagagcctgaagttgctgatgtgtttgatagcgatttcgatgaagatgagcctgacccggacgaaggcgcagaagacaatgagggagaggaaagacggacgaagaagcggttgaaatttccagggaagcagccaagcaagaagaagaagataaaagtgctttcgaagatagaagacagctccaagaatgaaaagccgaaatcttcttctaaaactgaacagcatcatcatgatgcgcctgaggatggagaaggggagagaagtgtgaggaaatctacgagaactgcagtggttgttaggcaagctgagagagaggcaaatcgtgctgctttgcaagcaaccatgaggccgataaagagaaaaaaggaaggcgaagagaagaggatgagccaggaagagatgcttctggaagctgctcaaacagaaattatcaacttgaggaatttggaacgtgttctagcaagggaggaagaagttaagaagcgagcaattgtgcataaggctgtctatactggtccacaactacgttatttttcaaaagatggtaactcatatctggaattcagcagagggttatcgttccattctgatctcgctacaacatctgctccctatcctgagaaagctgtctgtgcagttactggcttacctgccaagtaccgcgatccaaagacagggctaccttatgcaacaaaggaagcttttaaaattattcggcaacgctttctacaagaaagtggtgcggttaggaaagagatggacctgggtgatttgtatgattcaatttctgggaaaggtttttcagcaaggcagaagagatcggtggtgtcaaataaaagtgaggtgtcatatcctcgatactttgcacgtttccgcagggcctcagctcttgaaagtgtatcctctgaagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0034728 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043486 GO:0043933 GO:0044424 GO:0044464 GO:0051276 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YL1 YL1_C

Protein Analysis

358

Amino Acids

40.99

Weight (kDa)

5.75

Isoelectric Point (pI)

57.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36740 AT2G36740
fragaria_vesca	FvH4_7g33430 FvH4_7g33430 FvH4_7g33430 FvH4_7g33430
malus_domestica	MD07G1075300.v1.1 MD07G1304400.v1.1
prunus_persica	Prupe.2G323000_v2.0.a1
pyrus_communis	pycom07g05940
rosa_chinensis	RchiOBHm_Chr1g0383401
rosa_laevigata	RLG00000026104
rosa_multiflora	Rmu_co8369689.1_g000001 Rmu_sc0007173.1_g000009 Rmu_sc0012471.1_g000026
rosa_roxburghii	Rroxscaffold_4G00277320
rosa_rugosa	Rorug01G0441300 Rorug01G0441400 Rorug01G0441500 Rorug01G0441600
rosa_samantha	Rh1AG467200 Rh1BG424500 Rh1BG424600 Rh1CG437500 Rh1DG457200 Rh1DG457300
rosa_wichuraiana	Rw1G040540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	820
AccII	CGCG	2 cut(s)	51, 825
AciI	CCGC	4 cut(s)	271, 823, 905, 1036
AclWI	GGATC	2 cut(s)	45, 821
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	3 cut(s)	278, 604, 722
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	1 cut(s)	821
AfiI	CCNNNNNNNGG	4 cut(s)	60, 227, 407, 836
AflIII	ACRYGT	1 cut(s)	613
AgsI	TTSAA	4 cut(s)	277, 699, 945, 1055
AjnI	CCWGG	3 cut(s)	283, 552, 924
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	6 cut(s)	342, 467, 575, 788, 863, 1049
AluI	AGCT	6 cut(s)	342, 467, 575, 788, 863, 1049
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	2 cut(s)	45, 821
AlwNI	CAGNNNCTG	2 cut(s)	170, 803
AoxI	GGCC	3 cut(s)	24, 509, 1041
ApeKI	GCWGC	3 cut(s)	292, 488, 575
ApoI	RAATTY	3 cut(s)	278, 604, 722
Asp700I	GAANNNNTTC	1 cut(s)	615
AspLEI	GCGC	4 cut(s)	53, 130, 233, 400
AspS9I	GGNCC	4 cut(s)	7, 677, 922, 1041
AsuC2I	CCSGG	2 cut(s)	23, 221
AsuHPI	GGTGA	1 cut(s)	941
AsuII	TTCGAA	1 cut(s)	326
AvaII	GGWCC	3 cut(s)	7, 677, 922
AxyI	CCTNAGG	1 cut(s)	402
BbsI	GAAGAC	2 cut(s)	243, 342
BbvCI	CCTCAGC	1 cut(s)	1045
BbvI	GCAGC	3 cut(s)	304, 475, 562
BccI	CCATC	3 cut(s)	401, 698, 913
BceAI	ACGGC	1 cut(s)	11
BciT130I	CCWGG	3 cut(s)	285, 554, 926
BciVI	GTATCC	1 cut(s)	1072
BcnI	CCSGG	2 cut(s)	23, 221
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	620
BfmI	CTRYAG	1 cut(s)	447
BfoI	RGCGCY	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	820
BfuI	GTATCC	1 cut(s)	1072
BisI	GCNGC	3 cut(s)	293, 489, 576
BlsI	GCNGC	3 cut(s)	294, 490, 577
Bme1390I	CCNGG	5 cut(s)	23, 221, 285, 554, 926
Bme18I	GGWCC	3 cut(s)	7, 677, 922
BmgT120I	GGNCC	4 cut(s)	7, 677, 922, 1041
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	5 cut(s)	23, 221, 285, 554, 926
BmsI	GCATC	3 cut(s)	385, 394, 552
BpiI	GAAGAC	2 cut(s)	243, 342
Bpu10I	CCTNAGC	1 cut(s)	1045
Bpu14I	TTCGAA	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	619
BpuMI	CCSGG	2 cut(s)	23, 221
BsaJI	CCNNGG	2 cut(s)	284, 925
BsaXI	ACNNNNNCTCC	2 cut(s)	754, 784
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 227, 407, 836
Bse1I	ACTGG	3 cut(s)	87, 679, 808
Bse21I	CCTNAGG	1 cut(s)	402
BseBI	CCWGG	3 cut(s)	285, 554, 926
BseDI	CCNNGG	2 cut(s)	284, 925
BseGI	GGATG	4 cut(s)	75, 91, 412, 552
BseLI	CCNNNNNNNGG	4 cut(s)	60, 227, 407, 836
BseMII	CTCAG	4 cut(s)	393, 459, 771, 1059
BseNI	ACTGG	3 cut(s)	87, 679, 808
BseX3I	CGGCCG	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	304, 475, 562
BsgI	GTGCAG	1 cut(s)	816
Bsh1236I	CGCG	2 cut(s)	51, 825
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	3 cut(s)	26, 511, 1043
BsiEI	CGRYCG	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	23, 221
BslI	CCNNNNNNNGG	4 cut(s)	60, 227, 407, 836
BsmAI	GTCTC	1 cut(s)	101
BsmBI	CGTCTC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	26, 511, 1043
Bsp119I	TTCGAA	1 cut(s)	326
Bsp143I	GATC	4 cut(s)	37, 751, 826, 980
BspACI	CCGC	4 cut(s)	271, 823, 905, 1036
BspANI	GGCC	3 cut(s)	26, 511, 1043
BspCNI	CTCAG	4 cut(s)	394, 460, 772, 1058
BspFNI	CGCG	2 cut(s)	51, 825
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	9
BspMAI	CTGCAG	1 cut(s)	451
BspMI	ACCTGC	1 cut(s)	820
BspPI	GGATC	2 cut(s)	45, 821
BspT104I	TTCGAA	1 cut(s)	326
BsrI	ACTGG	3 cut(s)	87, 679, 808
BssECI	CCNNGG	2 cut(s)	284, 925
BssMI	GATC	4 cut(s)	37, 751, 826, 980
Bst2UI	CCWGG	3 cut(s)	285, 554, 926
Bst6I	CTCTTC	7 cut(s)	59, 93, 531, 536, 552, 971, 1065
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstBI	TTCGAA	1 cut(s)	326
BstC8I	GCNNGC	3 cut(s)	465, 498, 648
BstDEI	CTNAG	4 cut(s)	402, 468, 780, 1045
BstF5I	GGATG	4 cut(s)	75, 91, 412, 552
BstFNI	CGCG	2 cut(s)	51, 825
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	4 cut(s)	53, 130, 233, 400
BstKTI	GATC	4 cut(s)	40, 754, 829, 983
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	4 cut(s)	37, 751, 826, 980
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 485, 497, 794
BstNI	CCWGG	3 cut(s)	285, 554, 926
BstSCI	CCNGG	5 cut(s)	21, 219, 283, 552, 924
BstSFI	CTRYAG	1 cut(s)	447
BstUI	CGCG	2 cut(s)	51, 825
BstV1I	GCAGC	3 cut(s)	304, 475, 562
BstV2I	GAAGAC	2 cut(s)	243, 342
BstZI	CGGCCG	1 cut(s)	24
Bsu36I	CCTNAGG	1 cut(s)	402
BsuI	GTATCC	1 cut(s)	1072
BsuRI	GGCC	3 cut(s)	26, 511, 1043
BtsCI	GGATG	4 cut(s)	75, 91, 412, 552
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	820
Cac8I	GCNNGC	3 cut(s)	465, 498, 648
CaiI	CAGNNNCTG	2 cut(s)	170, 803
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	4 cut(s)	53, 130, 233, 400
Cfr13I	GGNCC	4 cut(s)	7, 677, 922, 1041
Csp6I	GTAC	1 cut(s)	820
CviAII	CATG	2 cut(s)	392, 505
CviQI	GTAC	1 cut(s)	820
DdeI	CTNAG	4 cut(s)	402, 468, 780, 1045
DpnI	GATC	4 cut(s)	39, 753, 828, 982
DpnII	GATC	4 cut(s)	37, 751, 826, 980
DraI	TTTAAA	1 cut(s)	868
EaeI	YGGCCR	1 cut(s)	24
EagI	CGGCCG	1 cut(s)	24
Eam1104I	CTCTTC	7 cut(s)	59, 93, 531, 536, 552, 971, 1065
EarI	CTCTTC	7 cut(s)	59, 93, 531, 536, 552, 971, 1065
EclXI	CGGCCG	1 cut(s)	24
Eco47I	GGWCC	3 cut(s)	7, 677, 922
Eco52I	CGGCCG	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	192
Eco81I	CCTNAGG	1 cut(s)	402
EcoO109I	RGGNCCY	2 cut(s)	7, 1041
EcoRI	GAATTC	1 cut(s)	722
EcoRII	CCWGG	3 cut(s)	283, 552, 924
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	2 cut(s)	395, 508
FaiI	YATR	9 cut(s)	159, 393, 506, 660, 672, 715, 849, 939, 1012
FalI	AAGNNNNNCTT	4 cut(s)	114, 146, 549, 581
FatI	CATG	2 cut(s)	391, 504
Fnu4HI	GCNGC	3 cut(s)	293, 489, 576
FokI	GGATG	4 cut(s)	82, 98, 419, 559
Fsp4HI	GCNGC	3 cut(s)	293, 489, 576
FspBI	CTAG	1 cut(s)	620
GlaI	GCGC	4 cut(s)	52, 129, 232, 399
GluI	GCNGC	3 cut(s)	293, 489, 576
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	3 cut(s)	26, 511, 1043
HapII	CCGG	2 cut(s)	23, 221
HhaI	GCGC	4 cut(s)	53, 130, 233, 400
Hin1II	CATG	2 cut(s)	395, 508
Hin6I	GCGC	4 cut(s)	51, 128, 231, 398
HinP1I	GCGC	4 cut(s)	51, 128, 231, 398
HindIII	AAGCTT	1 cut(s)	861
HinfI	GANTC	2 cut(s)	118, 941
HpaII	CCGG	2 cut(s)	23, 221
HphI	GGTGA	1 cut(s)	941
Hpy166II	GTNNAC	1 cut(s)	680
Hpy188I	TCNGA	2 cut(s)	751, 1069
Hpy188III	TCNNGA	8 cut(s)	35, 115, 122, 392, 569, 719, 779, 1052
Hpy8I	GTNNAC	1 cut(s)	680
HpyAV	CCTTC	3 cut(s)	221, 407, 524
HpyCH4IV	ACGT	4 cut(s)	110, 613, 688, 1030
HpyCH4V	TGCA	6 cut(s)	449, 496, 658, 797, 851, 1028
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 485, 497, 794
HpyF3I	CTNAG	4 cut(s)	402, 468, 780, 1045
HpySE526I	ACGT	4 cut(s)	110, 613, 688, 1030
Hsp92II	CATG	2 cut(s)	395, 508
HspAI	GCGC	4 cut(s)	51, 128, 231, 398
Kzo9I	GATC	4 cut(s)	37, 751, 826, 980
LmnI	GCTCC	2 cut(s)	347, 775
Lsp1109I	GCAGC	3 cut(s)	304, 475, 562
LweI	GCATC	3 cut(s)	385, 394, 552
MaeI	CTAG	1 cut(s)	620
MaeII	ACGT	4 cut(s)	110, 613, 688, 1030
MaeIII	GTNAC	3 cut(s)	78, 707, 799
MalI	GATC	4 cut(s)	39, 753, 828, 982
MboI	GATC	4 cut(s)	37, 751, 826, 980
MfeI	CAATTG	1 cut(s)	651
MluCI	AATT	7 cut(s)	278, 588, 604, 651, 722, 870, 945
MroXI	GAANNNNTTC	1 cut(s)	615
MseI	TTAA	3 cut(s)	132, 639, 867
MslI	CAYNNNNRTG	2 cut(s)	390, 393
MspI	CCGG	2 cut(s)	23, 221
MspR9I	CCNGG	5 cut(s)	23, 221, 285, 554, 926
MunI	CAATTG	1 cut(s)	651
MvaI	CCWGG	3 cut(s)	285, 554, 926
MvnI	CGCG	2 cut(s)	51, 825
MwoI	GCNNNNNNNGC	4 cut(s)	48, 485, 497, 794
NciI	CCSGG	2 cut(s)	23, 221
NdeII	GATC	4 cut(s)	37, 751, 826, 980
NlaIII	CATG	2 cut(s)	395, 508
NlaIV	GGNNCC	1 cut(s)	9
NspV	TTCGAA	1 cut(s)	326
PagI	TCATGA	1 cut(s)	391
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	615
PfeI	GAWTC	2 cut(s)	118, 941
PkrI	GCNGC	3 cut(s)	294, 490, 577
PpuMI	RGGWCCY	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	7
Psp6I	CCWGG	3 cut(s)	283, 552, 924
PspGI	CCWGG	3 cut(s)	283, 552, 924
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	4 cut(s)	7, 677, 922, 1041
PspPPI	RGGWCCY	1 cut(s)	7
PstI	CTGCAG	1 cut(s)	451
PstNI	CAGNNNCTG	2 cut(s)	170, 803
RsaI	GTAC	1 cut(s)	821
RsaNI	GTAC	1 cut(s)	820
RseI	CAYNNNNRTG	2 cut(s)	390, 393
SaqAI	TTAA	3 cut(s)	132, 639, 867
SatI	GCNGC	3 cut(s)	293, 489, 576
Sau3AI	GATC	4 cut(s)	37, 751, 826, 980
Sau96I	GGNCC	4 cut(s)	7, 677, 922, 1041
ScrFI	CCNGG	5 cut(s)	23, 221, 285, 554, 926
SfaNI	GCATC	3 cut(s)	385, 394, 552
SfcI	CTRYAG	1 cut(s)	447
SfuI	TTCGAA	1 cut(s)	326
SinI	GGWCC	3 cut(s)	7, 677, 922
SmiMI	CAYNNNNRTG	2 cut(s)	390, 393
SmlI	CTYRAG	1 cut(s)	598
SmoI	CTYRAG	1 cut(s)	598
Sse9I	AATT	7 cut(s)	278, 588, 604, 651, 722, 870, 945
SsiI	CCGC	4 cut(s)	271, 823, 905, 1036
SspMI	CTAG	1 cut(s)	620
StyD4I	CCNGG	5 cut(s)	21, 219, 283, 552, 924
TaiI	ACGT	4 cut(s)	113, 616, 691, 1033
TaqI	TCGA	4 cut(s)	96, 201, 326, 1018
TasI	AATT	7 cut(s)	278, 588, 604, 651, 722, 870, 945
TfiI	GAWTC	2 cut(s)	118, 941
Tru1I	TTAA	3 cut(s)	132, 639, 867
Tru9I	TTAA	3 cut(s)	132, 639, 867
TscAI	CASTG	1 cut(s)	456
TseI	GCWGC	3 cut(s)	292, 488, 575
TspDTI	ATGAA	4 cut(s)	102, 174, 219, 366
TspGWI	ACGGA	1 cut(s)	274
TspRI	CASTG	1 cut(s)	456
VpaK11BI	GGWCC	3 cut(s)	7, 677, 922
XapI	RAATTY	3 cut(s)	278, 604, 722
XmnI	GAANNNNTTC	1 cut(s)	615
XspI	CTAG	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.