Rh1CG437500

SWR1 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006063
Physical Location & Seq
Forward (+)
69207302 .. 69218223
10922 bp
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UTR
Exon/CDS
Intron
Rh1CG437500.1

Sequence Viewer

Length: 654 bp
ATGGAGGACCCGAAAGATGACCCGGCCGTGTTTCTGGATCGCACCTCACGCGCCACCAGAGGGAAGAGACGGACGAAGAAGCGGTTGAAATTTCCGGGGAAGCAGCCAAGCAAGAAGAAGAAGATAAAAGTGCTTTCGAAGATAGAAGACAGCTCCAAGAATGAAGAGCCGAAATCTTCTTCTAAAACTGAACAGCATCATCATGATGCTCCTGAGGATGGAGAAGGGGAGAGAAGTGTGAGGAAATCTACGAGAACTGCAGTGGTTGTTAGGCAAGCTGAGAGAGAGGCAAATCGTGCTGCTTTGCAAGCAACCATGAGGGTAAGTGTCGATGAAATTATCAACTTGAGGAATTTGGAACGTGTTCTAGCAAGGGAGGAAGAAGTTAAGAAGCGAGCAATTGTGCATAAGGCTGTCTATACTGGTCCACAACTACGTTATTTTTCAAAAGATGGCAACTCATACCTGGAATTCAGCAGAGGGTTATCGTTCCATTCTGATCTCTCTACAACATCTGCTCCCTATCCTGAGAAAGCTGTCTGTGCAGTTACTGGCTTACCTGCCAAGTACCGCGATCCAAAGACAGGGCTACCTTATGCAACAAAGGAAGCTTTTAAAATTATTCGGCAGCGATTTCGATTGGAAGTTGCTTAG

Protein Analysis

217

Amino Acids

24.71

Weight (kDa)

10.02

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YL1_C PF08265 180 - 208 1.6e-16 YL1 nuclear protein C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 568
AccII CGCG 2 cut(s) 51, 573
AciI CCGC 2 cut(s) 82, 571
AclWI GGATC 2 cut(s) 45, 569
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 3 cut(s) 89, 352, 470
AfaI GTAC 1 cut(s) 569
AfiI CCNNNNNNNGG 3 cut(s) 60, 218, 584
AflIII ACRYGT 1 cut(s) 361
AgsI TTSAA 2 cut(s) 88, 447
AjnI CCWGG 1 cut(s) 465
AluBI AGCT 4 cut(s) 153, 278, 536, 611
AluI AGCT 4 cut(s) 153, 278, 536, 611
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 2 cut(s) 45, 569
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 3 cut(s) 103, 299, 628
ApoI RAATTY 3 cut(s) 89, 352, 470
Asp700I GAANNNNTTC 1 cut(s) 363
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 2 cut(s) 7, 425
AsuC2I CCSGG 2 cut(s) 23, 96
AsuII TTCGAA 1 cut(s) 137
AvaII GGWCC 2 cut(s) 7, 425
AxyI CCTNAGG 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 3 cut(s) 115, 286, 640
BccI CCATC 2 cut(s) 212, 446
BceAI ACGGC 1 cut(s) 11
BcgI CGANNNNNNTGC 2 cut(s) 617, 651
BciT130I CCWGG 1 cut(s) 467
BcnI CCSGG 2 cut(s) 23, 96
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 1 cut(s) 368
BfmI CTRYAG 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 568
BisI GCNGC 3 cut(s) 104, 300, 629
BlsI GCNGC 3 cut(s) 105, 301, 630
Bme1390I CCNGG 3 cut(s) 23, 96, 467
Bme18I GGWCC 2 cut(s) 7, 425
BmgT120I GGNCC 2 cut(s) 7, 425
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 3 cut(s) 23, 96, 467
BmsI GCATC 2 cut(s) 196, 205
BpiI GAAGAC 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 367
BpuMI CCSGG 2 cut(s) 23, 96
BsaJI CCNNGG 1 cut(s) 95
BsaXI ACNNNNNCTCC 2 cut(s) 502, 532
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 218, 584
Bse1I ACTGG 2 cut(s) 427, 556
Bse21I CCTNAGG 1 cut(s) 213
BseBI CCWGG 1 cut(s) 467
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 3 cut(s) 60, 218, 584
BseMII CTCAG 3 cut(s) 204, 270, 519
BseNI ACTGG 2 cut(s) 427, 556
BseX3I CGGCCG 1 cut(s) 24
BseXI GCAGC 3 cut(s) 115, 286, 640
BsgI GTGCAG 1 cut(s) 564
Bsh1236I CGCG 2 cut(s) 51, 573
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 1 cut(s) 26
BsiEI CGRYCG 1 cut(s) 27
BsiSI CCGG 2 cut(s) 23, 95
BslI CCNNNNNNNGG 3 cut(s) 60, 218, 584
BsmAI GTCTC 1 cut(s) 61
BsmBI CGTCTC 1 cut(s) 61
BsnI GGCC 1 cut(s) 26
Bsp119I TTCGAA 1 cut(s) 137
Bsp143I GATC 3 cut(s) 37, 499, 574
BspACI CCGC 2 cut(s) 82, 571
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 3 cut(s) 205, 271, 520
BspFNI CGCG 2 cut(s) 51, 573
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 9
BspMAI CTGCAG 1 cut(s) 262
BspMI ACCTGC 1 cut(s) 568
BspPI GGATC 2 cut(s) 45, 569
BspQI GCTCTTC 1 cut(s) 159
BspT104I TTCGAA 1 cut(s) 137
BsrI ACTGG 2 cut(s) 427, 556
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 3 cut(s) 37, 499, 574
Bst2UI CCWGG 1 cut(s) 467
Bst6I CTCTTC 2 cut(s) 59, 159
BstAPI GCANNNNNTGC 1 cut(s) 296
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 3 cut(s) 276, 309, 396
BstDEI CTNAG 4 cut(s) 213, 279, 528, 651
BstF5I GGATG 1 cut(s) 223
BstFNI CGCG 2 cut(s) 51, 573
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 3 cut(s) 40, 502, 577
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 3 cut(s) 37, 499, 574
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 4 cut(s) 48, 296, 308, 542
BstNI CCWGG 1 cut(s) 467
BstSCI CCNGG 3 cut(s) 21, 94, 465
BstSFI CTRYAG 1 cut(s) 258
BstUI CGCG 2 cut(s) 51, 573
BstV1I GCAGC 3 cut(s) 115, 286, 640
BstV2I GAAGAC 1 cut(s) 153
BstZI CGGCCG 1 cut(s) 24
Bsu36I CCTNAGG 1 cut(s) 213
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 223
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 267
BveI ACCTGC 1 cut(s) 568
Cac8I GCNNGC 3 cut(s) 276, 309, 396
CaiI CAGNNNCTG 1 cut(s) 551
CciI TCATGA 1 cut(s) 202
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 7, 425
Csp6I GTAC 1 cut(s) 568
CviAII CATG 2 cut(s) 203, 316
CviQI GTAC 1 cut(s) 568
DdeI CTNAG 4 cut(s) 213, 279, 528, 651
DpnI GATC 3 cut(s) 39, 501, 576
DpnII GATC 3 cut(s) 37, 499, 574
DraI TTTAAA 1 cut(s) 616
EaeI YGGCCR 1 cut(s) 24
EagI CGGCCG 1 cut(s) 24
Eam1104I CTCTTC 2 cut(s) 59, 159
EarI CTCTTC 2 cut(s) 59, 159
EclXI CGGCCG 1 cut(s) 24
Eco47I GGWCC 2 cut(s) 7, 425
Eco52I CGGCCG 1 cut(s) 24
Eco81I CCTNAGG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 465
Esp3I CGTCTC 1 cut(s) 61
FaeI CATG 2 cut(s) 206, 319
FaiI YATR 6 cut(s) 204, 317, 408, 420, 463, 597
FatI CATG 2 cut(s) 202, 315
Fnu4HI GCNGC 3 cut(s) 104, 300, 629
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 3 cut(s) 104, 300, 629
FspBI CTAG 1 cut(s) 368
GlaI GCGC 1 cut(s) 52
GluI GCNGC 3 cut(s) 104, 300, 629
HaeIII GGCC 1 cut(s) 26
HapII CCGG 2 cut(s) 23, 95
HhaI GCGC 1 cut(s) 53
Hin1II CATG 2 cut(s) 206, 319
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 609
HpaII CCGG 2 cut(s) 23, 95
Hpy166II GTNNAC 1 cut(s) 428
Hpy188I TCNGA 1 cut(s) 499
Hpy188III TCNNGA 4 cut(s) 35, 203, 212, 527
Hpy8I GTNNAC 1 cut(s) 428
HpyAV CCTTC 1 cut(s) 218
HpyCH4IV ACGT 2 cut(s) 361, 436
HpyCH4V TGCA 5 cut(s) 260, 307, 406, 545, 599
HpyF10VI GCNNNNNNNGC 4 cut(s) 48, 296, 308, 542
HpyF3I CTNAG 4 cut(s) 213, 279, 528, 651
HpySE526I ACGT 2 cut(s) 361, 436
Hsp92II CATG 2 cut(s) 206, 319
HspAI GCGC 1 cut(s) 51
Kzo9I GATC 3 cut(s) 37, 499, 574
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 3 cut(s) 158, 214, 523
Lsp1109I GCAGC 3 cut(s) 115, 286, 640
LweI GCATC 2 cut(s) 196, 205
MaeI CTAG 1 cut(s) 368
MaeII ACGT 2 cut(s) 361, 436
MaeIII GTNAC 1 cut(s) 547
MalI GATC 3 cut(s) 39, 501, 576
MboI GATC 3 cut(s) 37, 499, 574
MfeI CAATTG 1 cut(s) 399
MluCI AATT 6 cut(s) 89, 336, 352, 399, 470, 618
MnlI CCTC 9 cut(s) 53, 55, 208, 234, 280, 312, 342, 370, 473
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 2 cut(s) 387, 615
MslI CAYNNNNRTG 2 cut(s) 201, 204
MspI CCGG 2 cut(s) 23, 95
MspR9I CCNGG 3 cut(s) 23, 96, 467
MunI CAATTG 1 cut(s) 399
MvaI CCWGG 1 cut(s) 467
MvnI CGCG 2 cut(s) 51, 573
MwoI GCNNNNNNNGC 4 cut(s) 48, 296, 308, 542
NciI CCSGG 2 cut(s) 23, 96
NdeII GATC 3 cut(s) 37, 499, 574
NlaIII CATG 2 cut(s) 206, 319
NlaIV GGNNCC 1 cut(s) 9
NspV TTCGAA 1 cut(s) 137
PagI TCATGA 1 cut(s) 202
PciSI GCTCTTC 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 363
PkrI GCNGC 3 cut(s) 105, 301, 630
PpuMI RGGWCCY 1 cut(s) 7
Psp5II RGGWCCY 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 465
PspGI CCWGG 1 cut(s) 465
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 2 cut(s) 7, 425
PspPPI RGGWCCY 1 cut(s) 7
PstI CTGCAG 1 cut(s) 262
PstNI CAGNNNCTG 1 cut(s) 551
RsaI GTAC 1 cut(s) 569
RsaNI GTAC 1 cut(s) 568
RseI CAYNNNNRTG 2 cut(s) 201, 204
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 2 cut(s) 387, 615
SatI GCNGC 3 cut(s) 104, 300, 629
Sau3AI GATC 3 cut(s) 37, 499, 574
Sau96I GGNCC 2 cut(s) 7, 425
ScrFI CCNGG 3 cut(s) 23, 96, 467
SfaNI GCATC 2 cut(s) 196, 205
SfcI CTRYAG 1 cut(s) 258
SfuI TTCGAA 1 cut(s) 137
SinI GGWCC 2 cut(s) 7, 425
SmiMI CAYNNNNRTG 2 cut(s) 201, 204
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
Sse9I AATT 6 cut(s) 89, 336, 352, 399, 470, 618
SsiI CCGC 2 cut(s) 82, 571
SspMI CTAG 1 cut(s) 368
StyD4I CCNGG 3 cut(s) 21, 94, 465
TaiI ACGT 2 cut(s) 364, 439
TaqI TCGA 3 cut(s) 137, 330, 637
TasI AATT 6 cut(s) 89, 336, 352, 399, 470, 618
Tru1I TTAA 2 cut(s) 387, 615
Tru9I TTAA 2 cut(s) 387, 615
TscAI CASTG 1 cut(s) 267
TseI GCWGC 3 cut(s) 103, 299, 628
TspDTI ATGAA 2 cut(s) 177, 348
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 1 cut(s) 267
VpaK11BI GGWCC 2 cut(s) 7, 425
XapI RAATTY 3 cut(s) 89, 352, 470
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.