Rh1BG424500

SWR1 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0006063
Physical Location & Seq
Forward (+)
54320192 .. 54321139
948 bp
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UTR
Exon/CDS
Intron
Rh1BG424500.1

Sequence Viewer

Length: 594 bp
ATGGAGGACCCGAAAGATGACCCGGCCGTGTTTCTGGATCGCACCTCACGCGCCACCAGAGGGAAGAGGATGACGAAGTTACTGGATGAAGAAATCGAAGAGGACGAGACGTTCTGGAATCAAGAGGCTCTTAAAGATGAGGAAGAAGATGATAACTATGAAGCAGAGCCTGAAGTTGCTGATGTGTTTGATAGCGATTTCGATGAAGATGAGCCTGACCTGGACGAAGGCGCAGAAGACAATGAGGGAGAGGAAAGACGGACGAAGAAGCGGTTGAAATTTCCGGGGAAGCAGCCAAGCAAGAAGAAGAAGATAAAAGTGCTTTCGAAGATAGAAGACAGCTCCAAGAATGAAAAGCCGAAATCTTCTTCTAAACCTGAACAGCATCATCATGATGCTCCTGAGGATGGAGAAGGGGAGAGAAGTGTGAGGAAATCTACGAGAACTGCAGTGGTTGTTAGGCAAGCTGAGAGAGAGGCAAATCGTGCTGCTTTGCAAGCAACCATGAGGGTAAGTGTCGATGGTATTTGGGTGTTGGCTATGCTCCAAATTATGATTGTGTTTGTAATGAATATTGATTTTCTGTTACATTAG

Protein Analysis

197

Amino Acids

22.7

Weight (kDa)

4.74

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YL1 PF05764 14 - 170 1.8e-20 YL1 nuclear protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 51
AciI CCGC 1 cut(s) 271
AclWI GGATC 1 cut(s) 45
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 192
AfiI CCNNNNNNNGG 2 cut(s) 60, 407
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 1 cut(s) 219
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 2 cut(s) 342, 467
AluI AGCT 2 cut(s) 342, 467
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 1 cut(s) 45
AlwNI CAGNNNCTG 1 cut(s) 170
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 292, 488
ApoI RAATTY 1 cut(s) 278
AspLEI GCGC 2 cut(s) 53, 233
AspS9I GGNCC 1 cut(s) 7
AsuC2I CCSGG 2 cut(s) 23, 285
AsuII TTCGAA 1 cut(s) 326
AvaII GGWCC 1 cut(s) 7
AxyI CCTNAGG 1 cut(s) 402
BbsI GAAGAC 2 cut(s) 243, 342
BbvI GCAGC 2 cut(s) 304, 475
BccI CCATC 2 cut(s) 401, 515
BceAI ACGGC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 221
BcnI CCSGG 2 cut(s) 23, 285
BcoDI GTCTC 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 447
BisI GCNGC 2 cut(s) 293, 489
BlsI GCNGC 2 cut(s) 294, 490
Bme1390I CCNGG 3 cut(s) 23, 221, 285
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 3 cut(s) 23, 221, 285
BmsI GCATC 2 cut(s) 385, 394
BpiI GAAGAC 2 cut(s) 243, 342
Bpu14I TTCGAA 1 cut(s) 326
BpuMI CCSGG 2 cut(s) 23, 285
BsaJI CCNNGG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 407
Bse1I ACTGG 1 cut(s) 87
Bse21I CCTNAGG 1 cut(s) 402
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 3 cut(s) 75, 91, 412
BseLI CCNNNNNNNGG 2 cut(s) 60, 407
BseMII CTCAG 2 cut(s) 393, 459
BseNI ACTGG 1 cut(s) 87
BseX3I CGGCCG 1 cut(s) 24
BseXI GCAGC 2 cut(s) 304, 475
Bsh1236I CGCG 1 cut(s) 51
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 1 cut(s) 26
BsiEI CGRYCG 1 cut(s) 27
BsiSI CCGG 2 cut(s) 23, 284
BslI CCNNNNNNNGG 2 cut(s) 60, 407
BsmAI GTCTC 1 cut(s) 101
BsmBI CGTCTC 1 cut(s) 101
BsnI GGCC 1 cut(s) 26
Bsp119I TTCGAA 1 cut(s) 326
Bsp143I GATC 1 cut(s) 37
BspACI CCGC 1 cut(s) 271
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 2 cut(s) 394, 460
BspFNI CGCG 1 cut(s) 51
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 1 cut(s) 9
BspMAI CTGCAG 1 cut(s) 451
BspPI GGATC 1 cut(s) 45
BspT104I TTCGAA 1 cut(s) 326
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 221
Bst6I CTCTTC 2 cut(s) 59, 93
BstAPI GCANNNNNTGC 1 cut(s) 485
BstBI TTCGAA 1 cut(s) 326
BstC8I GCNNGC 2 cut(s) 465, 498
BstDEI CTNAG 2 cut(s) 402, 468
BstF5I GGATG 3 cut(s) 75, 91, 412
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 2 cut(s) 53, 233
BstKTI GATC 1 cut(s) 40
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 37
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 3 cut(s) 48, 485, 497
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 3 cut(s) 21, 219, 283
BstSFI CTRYAG 1 cut(s) 447
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 304, 475
BstV2I GAAGAC 2 cut(s) 243, 342
BstZI CGGCCG 1 cut(s) 24
Bsu36I CCTNAGG 1 cut(s) 402
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 3 cut(s) 75, 91, 412
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 1 cut(s) 456
Cac8I GCNNGC 2 cut(s) 465, 498
CaiI CAGNNNCTG 1 cut(s) 170
CciI TCATGA 1 cut(s) 391
CfoI GCGC 2 cut(s) 53, 233
Cfr13I GGNCC 1 cut(s) 7
CviAII CATG 2 cut(s) 392, 505
CviJI RGCY 9 cut(s) 26, 128, 169, 214, 295, 342, 358, 467, 539
CviKI_1 RGCY 9 cut(s) 26, 128, 169, 214, 295, 342, 358, 467, 539
DdeI CTNAG 2 cut(s) 402, 468
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 24
EagI CGGCCG 1 cut(s) 24
Eam1104I CTCTTC 2 cut(s) 59, 93
EarI CTCTTC 2 cut(s) 59, 93
EclXI CGGCCG 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 7
Eco52I CGGCCG 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 192
Eco81I CCTNAGG 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 219
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 2 cut(s) 395, 508
FaiI YATR 5 cut(s) 159, 393, 506, 542, 554
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FatI CATG 2 cut(s) 391, 504
Fnu4HI GCNGC 2 cut(s) 293, 489
FokI GGATG 3 cut(s) 82, 98, 419
Fsp4HI GCNGC 2 cut(s) 293, 489
GlaI GCGC 2 cut(s) 52, 232
GluI GCNGC 2 cut(s) 293, 489
HaeIII GGCC 1 cut(s) 26
HapII CCGG 2 cut(s) 23, 284
HhaI GCGC 2 cut(s) 53, 233
Hin1II CATG 2 cut(s) 395, 508
Hin6I GCGC 2 cut(s) 51, 231
HinP1I GCGC 2 cut(s) 51, 231
HinfI GANTC 1 cut(s) 118
HpaII CCGG 2 cut(s) 23, 284
Hpy188III TCNNGA 5 cut(s) 35, 115, 122, 392, 401
HpyAV CCTTC 2 cut(s) 221, 407
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 2 cut(s) 449, 496
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 485, 497
HpyF3I CTNAG 2 cut(s) 402, 468
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 2 cut(s) 395, 508
HspAI GCGC 2 cut(s) 51, 231
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 3 cut(s) 347, 403, 549
Lsp1109I GCAGC 2 cut(s) 304, 475
LweI GCATC 2 cut(s) 385, 394
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 2 cut(s) 78, 585
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MluCI AATT 2 cut(s) 278, 549
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 2 cut(s) 390, 393
MspI CCGG 2 cut(s) 23, 284
MspR9I CCNGG 3 cut(s) 23, 221, 285
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 3 cut(s) 48, 485, 497
NciI CCSGG 2 cut(s) 23, 285
NdeII GATC 1 cut(s) 37
NlaIII CATG 2 cut(s) 395, 508
NlaIV GGNNCC 1 cut(s) 9
NspV TTCGAA 1 cut(s) 326
PagI TCATGA 1 cut(s) 391
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PfeI GAWTC 1 cut(s) 118
PkrI GCNGC 2 cut(s) 294, 490
PpuMI RGGWCCY 1 cut(s) 7
Psp5II RGGWCCY 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 7
PspPPI RGGWCCY 1 cut(s) 7
PstI CTGCAG 1 cut(s) 451
PstNI CAGNNNCTG 1 cut(s) 170
RseI CAYNNNNRTG 2 cut(s) 390, 393
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 2 cut(s) 293, 489
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 1 cut(s) 7
ScrFI CCNGG 3 cut(s) 23, 221, 285
SetI ASST 6 cut(s) 47, 113, 222, 344, 379, 469
SfaNI GCATC 2 cut(s) 385, 394
SfcI CTRYAG 1 cut(s) 447
SfuI TTCGAA 1 cut(s) 326
SinI GGWCC 1 cut(s) 7
SmiMI CAYNNNNRTG 2 cut(s) 390, 393
Sse9I AATT 2 cut(s) 278, 549
SsiI CCGC 1 cut(s) 271
SspI AATATT 1 cut(s) 574
StyD4I CCNGG 3 cut(s) 21, 219, 283
TaiI ACGT 1 cut(s) 113
TaqI TCGA 4 cut(s) 96, 201, 326, 519
TasI AATT 2 cut(s) 278, 549
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 456
TseI GCWGC 2 cut(s) 292, 488
TspDTI ATGAA 5 cut(s) 102, 174, 219, 366, 584
TspGWI ACGGA 1 cut(s) 274
TspRI CASTG 1 cut(s) 456
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.