Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006063

Physical Location & Seq

Genomic Coordinates Forward (+)

5253979 .. 5255483

Gene Structure 1505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g05940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAGAAGAAGAAAGTGATATCGGAATTAGAATCCAAGGATGGAAATGAGAAGTCTTCTCATCCCGAACAACTTCAGGATGCTCCTGAGGAAGCAGAAGCAGAGAGAACTGTGAGAAAATCTACTAGAACTTCAGTGGTTGTCCGTCAAGCTGAGAGGGACGCAATACGTGCGGCCTTGCAAGCGACCATGAAGCCGATTAAGAGAAAAAAGGAAGGCGAGGAGAAGAGGATGACCCAAGAAGAGATGCTTTTAGAAGCAGCTCAAACAGAAATTATGAACTTGAGAAATTTGGAGCGTGTTCTAGCGAGGGAGGAAGAAGTTAAGAAAAGAGCCATTGTACATAAGGCTGTCTATACTGGTCCACAAGTACGTTATTTTTCAAAAGATGGCCGCTCGTATCTGGAATTTAGCAAAGGATTGTCATTTCAGTCAGAAATCTCTACCGCACCTGTTCCCTACCCTGAGAAAGCTGTCTGTGCTGTTACTGGTTTACCTGCCAAGTACCGTGATCCAAAGAAGGGGCTACCTTATGCAACAAAAGAAGCTTTTAACATCATTCGCCAACGTTTTCTACAGGAAAGTGGTAGGGTCAGGAAAGAGATGGACCTGGGTGACTTGTACGGTTCACTTGCTGGTAAGGGGTTTTCGGCAAGGGGGAAGAGATCAGTGGCGTCAAATAACATTGATGCGTCGTACTCTCGATATTTTGCACGTTTCCGCAGAATTCCAGCTCTTGAAAGCGAATCATCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0034728 GO:0043044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043486 GO:0043933 GO:0044424 GO:0044464 GO:0051276 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YL1 YL1_C

Protein Analysis

253

Amino Acids

28.61

Weight (kDa)

9.68

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36740 AT2G36740
fragaria_vesca	FvH4_7g33430 FvH4_7g33430 FvH4_7g33430 FvH4_7g33430
malus_domestica	MD07G1075300.v1.1 MD07G1304400.v1.1
prunus_persica	Prupe.2G323000_v2.0.a1
pyrus_communis	pycom07g05940
rosa_chinensis	RchiOBHm_Chr1g0383401
rosa_laevigata	RLG00000026104
rosa_multiflora	Rmu_co8369689.1_g000001 Rmu_sc0007173.1_g000009 Rmu_sc0012471.1_g000026
rosa_roxburghii	Rroxscaffold_4G00277320
rosa_rugosa	Rorug01G0441300 Rorug01G0441400 Rorug01G0441500 Rorug01G0441600
rosa_samantha	Rh1AG467200 Rh1BG424500 Rh1BG424600 Rh1CG437500 Rh1DG457200 Rh1DG457300
rosa_wichuraiana	Rw1G040540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	505
AccBSI	CCGCTC	1 cut(s)	396
AciI	CCGC	4 cut(s)	173, 394, 447, 721
AclI	AACGTT	1 cut(s)	568
AclWI	GGATC	1 cut(s)	506
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	3 cut(s)	289, 407, 726
AcuI	CTGAAG	2 cut(s)	59, 117
AcyI	GRCGYC	1 cut(s)	674
AfaI	GTAC	5 cut(s)	342, 372, 506, 623, 698
AfiI	CCNNNNNNNGG	1 cut(s)	521
AgsI	TTSAA	2 cut(s)	384, 740
AjnI	CCWGG	1 cut(s)	609
AluBI	AGCT	5 cut(s)	152, 263, 473, 548, 734
AluI	AGCT	5 cut(s)	152, 263, 473, 548, 734
AlwI	GGATC	1 cut(s)	506
AoxI	GGCC	2 cut(s)	174, 391
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	3 cut(s)	289, 407, 726
Asp700I	GAANNNNTTC	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	362, 607
AsuHPI	GGTGA	1 cut(s)	626
AvaII	GGWCC	2 cut(s)	362, 607
AxyI	CCTNAGG	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	3 cut(s)	35, 383, 598
BciT130I	CCWGG	1 cut(s)	611
BfaI	CTAG	2 cut(s)	126, 305
BfmI	CTRYAG	1 cut(s)	575
BfuAI	ACCTGC	1 cut(s)	505
BisI	GCNGC	3 cut(s)	174, 261, 394
BlsI	GCNGC	3 cut(s)	175, 262, 395
Bme1390I	CCNGG	1 cut(s)	611
Bme18I	GGWCC	2 cut(s)	362, 607
BmgT120I	GGNCC	2 cut(s)	362, 607
BmrFI	CCNGG	1 cut(s)	611
BmsI	GCATC	3 cut(s)	70, 237, 679
BpiI	GAAGAC	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	304
BsaAI	YACGTR	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	674
BsaJI	CCNNGG	2 cut(s)	36, 610
Bsc4I	CCNNNNNNNGG	1 cut(s)	521
Bse1I	ACTGG	2 cut(s)	364, 493
Bse21I	CCTNAGG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	611
BseDI	CCNNGG	2 cut(s)	36, 610
BseGI	GGATG	4 cut(s)	46, 61, 85, 237
BseLI	CCNNNNNNNGG	1 cut(s)	521
BseMII	CTCAG	3 cut(s)	78, 144, 456
BseNI	ACTGG	2 cut(s)	364, 493
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	272
BshFI	GGCC	2 cut(s)	176, 393
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	521
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	2 cut(s)	176, 393
Bsp1407I	TGTACA	1 cut(s)	340
Bsp143I	GATC	2 cut(s)	511, 665
BspACI	CCGC	4 cut(s)	173, 394, 447, 721
BspANI	GGCC	2 cut(s)	176, 393
BspCNI	CTCAG	3 cut(s)	79, 145, 457
BspMI	ACCTGC	1 cut(s)	505
BspPI	GGATC	1 cut(s)	506
BsrBI	CCGCTC	1 cut(s)	396
BsrGI	TGTACA	1 cut(s)	340
BsrI	ACTGG	2 cut(s)	364, 493
BssECI	CCNNGG	2 cut(s)	36, 610
BssMI	GATC	2 cut(s)	511, 665
BssNI	GRCGYC	1 cut(s)	674
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	3 cut(s)	112, 509, 626
Bst6I	CTCTTC	3 cut(s)	221, 237, 656
BstACI	GRCGYC	1 cut(s)	674
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstAUI	TGTACA	1 cut(s)	340
BstBAI	YACGTR	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	3 cut(s)	87, 153, 465
BstF5I	GGATG	4 cut(s)	46, 61, 85, 237
BstKTI	GATC	2 cut(s)	514, 668
BstMBI	GATC	2 cut(s)	511, 665
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 182, 479
BstNI	CCWGG	1 cut(s)	611
BstSCI	CCNGG	1 cut(s)	609
BstSFI	CTRYAG	1 cut(s)	575
BstV1I	GCAGC	1 cut(s)	272
BstV2I	GAAGAC	1 cut(s)	48
Bsu36I	CCTNAGG	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	176, 393
BtsCI	GGATG	4 cut(s)	46, 61, 85, 237
BtsIMutI	CAGTG	2 cut(s)	141, 675
BveI	ACCTGC	1 cut(s)	505
Cac8I	GCNNGC	1 cut(s)	183
Cfr13I	GGNCC	2 cut(s)	362, 607
CseI	GACGC	3 cut(s)	170, 663, 681
Csp6I	GTAC	5 cut(s)	341, 371, 505, 622, 697
CviAII	CATG	1 cut(s)	190
CviQI	GTAC	5 cut(s)	341, 371, 505, 622, 697
DdeI	CTNAG	3 cut(s)	87, 153, 465
DpnI	GATC	2 cut(s)	513, 667
DpnII	GATC	2 cut(s)	511, 665
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	3 cut(s)	221, 237, 656
EarI	CTCTTC	3 cut(s)	221, 237, 656
Eco130I	CCWWGG	1 cut(s)	36
Eco32I	GATATC	1 cut(s)	21
Eco47I	GGWCC	2 cut(s)	362, 607
Eco57I	CTGAAG	2 cut(s)	59, 117
Eco81I	CCTNAGG	1 cut(s)	87
EcoRI	GAATTC	1 cut(s)	726
EcoRII	CCWGG	1 cut(s)	609
EcoRV	GATATC	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	193
FaiI	YATR	5 cut(s)	191, 278, 345, 357, 534
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	3 cut(s)	174, 261, 394
FokI	GGATG	4 cut(s)	48, 53, 92, 244
Fsp4HI	GCNGC	3 cut(s)	174, 261, 394
FspBI	CTAG	2 cut(s)	126, 305
GluI	GCNGC	3 cut(s)	174, 261, 394
HaeIII	GGCC	2 cut(s)	176, 393
HgaI	GACGC	3 cut(s)	170, 663, 681
Hin1I	GRCGYC	1 cut(s)	674
Hin1II	CATG	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	546
HinfI	GANTC	2 cut(s)	32, 746
HphI	GGTGA	1 cut(s)	626
Hpy166II	GTNNAC	3 cut(s)	365, 494, 629
Hpy188I	TCNGA	3 cut(s)	25, 436, 754
Hpy188III	TCNNGA	7 cut(s)	65, 77, 86, 404, 595, 702, 737
Hpy8I	GTNNAC	3 cut(s)	365, 494, 629
Hpy99I	CGWCG	1 cut(s)	697
HpyAV	CCTTC	2 cut(s)	209, 514
HpyCH4III	ACNGT	3 cut(s)	112, 509, 626
HpyCH4IV	ACGT	4 cut(s)	169, 373, 568, 715
HpyCH4V	TGCA	3 cut(s)	181, 536, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 182, 479
HpyF3I	CTNAG	3 cut(s)	87, 153, 465
HpySE526I	ACGT	4 cut(s)	169, 373, 568, 715
Hsp92I	GRCGYC	1 cut(s)	674
Hsp92II	CATG	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	511, 665
LmnI	GCTCC	2 cut(s)	88, 295
Lsp1109I	GCAGC	1 cut(s)	272
LweI	GCATC	3 cut(s)	70, 237, 679
MaeI	CTAG	2 cut(s)	126, 305
MaeII	ACGT	4 cut(s)	169, 373, 568, 715
MaeIII	GTNAC	2 cut(s)	484, 614
MalI	GATC	2 cut(s)	513, 667
MbiI	CCGCTC	1 cut(s)	396
MboI	GATC	2 cut(s)	511, 665
MboII	GAAGA	8 cut(s)	16, 19, 22, 48, 238, 254, 329, 673
MluCI	AATT	5 cut(s)	26, 273, 289, 407, 726
MnlI	CCTC	6 cut(s)	82, 150, 214, 222, 303, 307
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	3 cut(s)	201, 324, 552
MspR9I	CCNGG	1 cut(s)	611
MvaI	CCWGG	1 cut(s)	611
MwoI	GCNNNNNNNGC	3 cut(s)	170, 182, 479
NdeII	GATC	2 cut(s)	511, 665
NlaIII	CATG	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	614
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	32, 746
PkrI	GCNGC	3 cut(s)	175, 262, 395
Ppu21I	YACGTR	1 cut(s)	170
Psp1406I	AACGTT	1 cut(s)	568
Psp6I	CCWGG	1 cut(s)	609
PspGI	CCWGG	1 cut(s)	609
PspPI	GGNCC	2 cut(s)	362, 607
RsaI	GTAC	5 cut(s)	342, 372, 506, 623, 698
RsaNI	GTAC	5 cut(s)	341, 371, 505, 622, 697
SaqAI	TTAA	3 cut(s)	201, 324, 552
SatI	GCNGC	3 cut(s)	174, 261, 394
Sau3AI	GATC	2 cut(s)	511, 665
Sau96I	GGNCC	2 cut(s)	362, 607
ScrFI	CCNGG	1 cut(s)	611
SfaNI	GCATC	3 cut(s)	70, 237, 679
SfcI	CTRYAG	1 cut(s)	575
SinI	GGWCC	2 cut(s)	362, 607
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
Sse9I	AATT	5 cut(s)	26, 273, 289, 407, 726
SsiI	CCGC	4 cut(s)	173, 394, 447, 721
SspMI	CTAG	2 cut(s)	126, 305
StyD4I	CCNGG	1 cut(s)	609
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	3 cut(s)	112, 509, 626
TaiI	ACGT	4 cut(s)	172, 376, 571, 718
TaqI	TCGA	1 cut(s)	703
TasI	AATT	5 cut(s)	26, 273, 289, 407, 726
TatI	WGTACW	1 cut(s)	340
TauI	GCSGC	2 cut(s)	176, 396
TfiI	GAWTC	2 cut(s)	32, 746
Tru1I	TTAA	3 cut(s)	201, 324, 552
Tru9I	TTAA	3 cut(s)	201, 324, 552
TscAI	CASTG	2 cut(s)	141, 675
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	3 cut(s)	17, 206, 293
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	2 cut(s)	141, 675
VpaK11BI	GGWCC	2 cut(s)	362, 607
XapI	RAATTY	3 cut(s)	289, 407, 726
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	2 cut(s)	126, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.