AT2G37000
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016655
Physical Location & Seq
Forward (+)
15540246 .. 15541248
1003 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G37000.1

Sequence Viewer

Length: 567 bp
ATGATTTTTCAGAATGTGTGCAGAAATGAGTCCAACTTCAACGCTATAGCTTCCGAATCGCGTTCCCAAACGCAGTTCGGTGTTTCGAAATCCTCCTCGAGCGGCGGCGGATGTATCTCCGCCAGGACTAAAGACCGTCACACGAAGGTTAACGGACGAAGCCGTCGAGTTACGATGCCGGCTCTCGCCGCCGCTAGGATTTTCCAGTTAACGCGTGAGCTCGGTCACAAAACTGAAGGAGAAACCATCGAATGGCTTCTTAGTCAAGCTGAACCGTCGATTATTGCCGCCACTGGCTACGGGACTAAGCTCATTTCGAATTGGGTTGATGTTGCGGCGGACGATTCCTCGTCGTCGTCGTCGATGACGTCGCCGCAAACGCAAACGCAAACGCCACAATCGCCGAGTTGTAGGTTGGATCTTTGTCAGCCAATCGGAATTCAGTATCCGGTGAATGGTTACAGTCATATGCCGTTCACAGCGATGCTTTTAGAGCCGATGACCACGACGGCGGAATCTGAGGTTGAGATCGCGGAGGAGGAGGAACGTAGACGCCGTCACCATTAG

Protein Analysis

188

Amino Acids

20.68

Weight (kDa)

6.52

Isoelectric Point (pI)

71.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 42 - 132 3.2e-25 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016655)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37000
fragaria_vesca FvH4_6g16170
malus_domestica MD12G1115100.v1.1
prunus_persica Prupe.6G234200_v2.0.a1
pyrus_communis pycom12g11440
rosa_chinensis RchiOBHm_Chr3g0470021
rosa_laevigata RLG00000024303
rosa_multiflora Rmu_sc0017440.1_g000006
rosa_roxburghii Rroxscaffold_6G00411290
rosa_rugosa Rorug03G0106100
rosa_samantha Rh3BG179400 Rh3CG170000 Rh3DG195700
rosa_wichuraiana Rw3G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 162
AatII GACGTC 1 cut(s) 371
AccB7I CCANNNNNTGG 1 cut(s) 252
AccBSI CCGCTC 1 cut(s) 102
AccI GTMKAC 1 cut(s) 550
AccII CGCG 3 cut(s) 61, 214, 533
AclWI GGATC 1 cut(s) 426
AcsI RAATTY 1 cut(s) 438
AcuI CTGAAG 1 cut(s) 255
AcyI GRCGYC 2 cut(s) 368, 553
AfiI CCNNNNNNNGG 3 cut(s) 195, 252, 455
AflIII ACRYGT 1 cut(s) 212
AgsI TTSAA 1 cut(s) 40
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 4 cut(s) 50, 220, 269, 310
AluI AGCT 4 cut(s) 50, 220, 269, 310
Alw21I GWGCWC 1 cut(s) 222
AlwI GGATC 1 cut(s) 426
Ama87I CYCGRG 1 cut(s) 97
ApoI RAATTY 1 cut(s) 438
Asp700I GAANNNNTTC 1 cut(s) 255
AsuHPI GGTGA 2 cut(s) 463, 551
AsuII TTCGAA 2 cut(s) 86, 317
AvaI CYCGRG 1 cut(s) 97
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 222
BccI CCATC 1 cut(s) 254
BceAI ACGGC 4 cut(s) 147, 457, 525, 540
BciT130I CCWGG 1 cut(s) 124
BciVI GTATCC 1 cut(s) 456
BfaI CTAG 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 45
BfuI GTATCC 1 cut(s) 456
BisI GCNGC 7 cut(s) 103, 106, 189, 192, 288, 336, 374
BlsI GCNGC 7 cut(s) 104, 107, 190, 193, 289, 337, 375
Bme1390I CCNGG 1 cut(s) 124
BmeT110I CYCGRG 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 124
BmsI GCATC 2 cut(s) 165, 474
Bpu14I TTCGAA 2 cut(s) 86, 317
BsaHI GRCGYC 2 cut(s) 368, 553
BsaWI WCCGGW 1 cut(s) 448
Bsc4I CCNNNNNNNGG 3 cut(s) 195, 252, 455
Bse118I RCCGGY 1 cut(s) 178
Bse1I ACTGG 2 cut(s) 205, 298
BseBI CCWGG 1 cut(s) 124
BseGI GGATG 1 cut(s) 116
BseLI CCNNNNNNNGG 3 cut(s) 195, 252, 455
BseMII CTCAG 1 cut(s) 510
BseNI ACTGG 2 cut(s) 205, 298
BseRI GAGGAG 3 cut(s) 85, 551, 554
BsgI GTGCAG 1 cut(s) 40
Bsh1236I CGCG 3 cut(s) 61, 214, 533
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 2 cut(s) 179, 449
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 3 cut(s) 195, 252, 455
BsmFI GGGAC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 97
Bsp119I TTCGAA 2 cut(s) 86, 317
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 418, 528
BspCNI CTCAG 1 cut(s) 511
BspFNI CGCG 3 cut(s) 61, 214, 533
BspPI GGATC 1 cut(s) 426
BspT104I TTCGAA 2 cut(s) 86, 317
BsrBI CCGCTC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 178
BsrI ACTGG 2 cut(s) 205, 298
BssAI RCCGGY 1 cut(s) 178
BssMI GATC 2 cut(s) 418, 528
BssNI GRCGYC 2 cut(s) 368, 553
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 3 cut(s) 137, 276, 464
BstACI GRCGYC 2 cut(s) 368, 553
BstBI TTCGAA 2 cut(s) 86, 317
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 3 cut(s) 260, 306, 519
BstF5I GGATG 1 cut(s) 116
BstFNI CGCG 3 cut(s) 61, 214, 533
BstKTI GATC 2 cut(s) 421, 531
BstMBI GATC 2 cut(s) 418, 528
BstMWI GCNNNNNNNGC 4 cut(s) 188, 379, 400, 493
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 45
BstUI CGCG 3 cut(s) 61, 214, 533
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BsuI GTATCC 1 cut(s) 456
BtgZI GCGATG 1 cut(s) 497
BtsCI GGATG 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 178
CseI GACGC 1 cut(s) 561
DdeI CTNAG 3 cut(s) 260, 306, 519
DpnI GATC 2 cut(s) 420, 530
DpnII GATC 2 cut(s) 418, 528
DrdI GACNNNNNNGTC 1 cut(s) 162
DseDI GACNNNNNNGTC 1 cut(s) 162
EciI GGCGGA 4 cut(s) 109, 123, 353, 527
Ecl136II GAGCTC 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 97
EcoICRI GAGCTC 1 cut(s) 220
EcoRI GAATTC 1 cut(s) 438
EcoRII CCWGG 1 cut(s) 122
EcoT38I GRGCYC 1 cut(s) 222
FaiI YATR 3 cut(s) 47, 468, 470
FaqI GGGAC 1 cut(s) 316
FauNDI CATATG 1 cut(s) 468
FblI GTMKAC 1 cut(s) 550
Fnu4HI GCNGC 7 cut(s) 103, 106, 189, 192, 288, 336, 374
FokI GGATG 1 cut(s) 123
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 7 cut(s) 103, 106, 189, 192, 288, 336, 374
FspBI CTAG 1 cut(s) 195
GluI GCNGC 7 cut(s) 103, 106, 189, 192, 288, 336, 374
HapII CCGG 2 cut(s) 179, 449
HgaI GACGC 1 cut(s) 561
Hin1I GRCGYC 2 cut(s) 368, 553
HincII GTYRAC 2 cut(s) 151, 210
HindII GTYRAC 2 cut(s) 151, 210
HinfI GANTC 4 cut(s) 29, 56, 344, 515
HpaI GTTAAC 2 cut(s) 151, 210
HpaII CCGG 2 cut(s) 179, 449
HphI GGTGA 2 cut(s) 463, 551
Hpy166II GTNNAC 4 cut(s) 151, 210, 477, 551
Hpy188I TCNGA 4 cut(s) 12, 55, 437, 520
Hpy8I GTNNAC 4 cut(s) 151, 210, 477, 551
Hpy99I CGWCG 8 cut(s) 168, 280, 355, 358, 361, 364, 373, 511
HpyAV CCTTC 2 cut(s) 139, 230
HpyCH4III ACNGT 3 cut(s) 137, 276, 464
HpyCH4IV ACGT 2 cut(s) 368, 547
HpyCH4V TGCA 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 379, 400, 493
HpyF3I CTNAG 3 cut(s) 260, 306, 519
HpySE526I ACGT 2 cut(s) 368, 547
Hsp92I GRCGYC 2 cut(s) 368, 553
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
KspAI GTTAAC 2 cut(s) 151, 210
Kzo9I GATC 2 cut(s) 418, 528
LpnPI CCDG 6 cut(s) 109, 136, 192, 218, 279, 462
LweI GCATC 2 cut(s) 165, 474
MaeI CTAG 1 cut(s) 195
MaeII ACGT 2 cut(s) 368, 547
MaeIII GTNAC 5 cut(s) 137, 169, 224, 458, 557
MalI GATC 2 cut(s) 420, 530
MbiI CCGCTC 1 cut(s) 102
MboI GATC 2 cut(s) 418, 528
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 2 cut(s) 319, 438
MluI ACGCGT 1 cut(s) 212
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 2 cut(s) 57, 396
MnlI CCTC 7 cut(s) 103, 106, 358, 514, 529, 532, 535
MroNI GCCGGC 1 cut(s) 178
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 2 cut(s) 150, 209
MslI CAYNNNNRTG 1 cut(s) 482
MspI CCGG 2 cut(s) 179, 449
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
MvnI CGCG 3 cut(s) 61, 214, 533
MwoI GCNNNNNNNGC 4 cut(s) 188, 379, 400, 493
NaeI GCCGGC 1 cut(s) 180
NdeI CATATG 1 cut(s) 468
NdeII GATC 2 cut(s) 418, 528
NgoMIV GCCGGC 1 cut(s) 178
NmeAIII GCCGAG 1 cut(s) 429
NmuCI GTSAC 3 cut(s) 137, 224, 557
NspV TTCGAA 2 cut(s) 86, 317
PaeR7I CTCGAG 1 cut(s) 97
PcsI WCGNNNNNNNCGW 5 cut(s) 163, 356, 359, 365, 553
PdiI GCCGGC 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 3 cut(s) 56, 344, 515
PflFI GACNNNGTC 1 cut(s) 555
PflMI CCANNNNNTGG 1 cut(s) 252
PkrI GCNGC 7 cut(s) 104, 107, 190, 193, 289, 337, 375
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PspXI VCTCGAGB 1 cut(s) 97
PsuI RGATCY 1 cut(s) 418
PsyI GACNNNGTC 1 cut(s) 555
RseI CAYNNNNRTG 1 cut(s) 482
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 2 cut(s) 150, 209
SatI GCNGC 7 cut(s) 103, 106, 189, 192, 288, 336, 374
Sau3AI GATC 2 cut(s) 418, 528
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 124
SduI GDGCHC 1 cut(s) 222
SetI ASST 9 cut(s) 52, 150, 222, 271, 312, 371, 416, 525, 550
SfaNI GCATC 2 cut(s) 165, 474
SfcI CTRYAG 1 cut(s) 45
Sfr274I CTCGAG 1 cut(s) 97
SfuI TTCGAA 2 cut(s) 86, 317
SlaI CTCGAG 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 482
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
Sse9I AATT 2 cut(s) 319, 438
SspMI CTAG 1 cut(s) 195
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 3 cut(s) 137, 276, 464
TaiI ACGT 2 cut(s) 371, 550
TaqI TCGA 7 cut(s) 86, 98, 166, 249, 278, 317, 362
TaqII GACCGA 1 cut(s) 212
TasI AATT 2 cut(s) 319, 438
TauI GCSGC 7 cut(s) 105, 108, 191, 194, 290, 338, 376
TfiI GAWTC 3 cut(s) 56, 344, 515
Tru1I TTAA 2 cut(s) 150, 209
Tru9I TTAA 2 cut(s) 150, 209
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 3 cut(s) 137, 224, 557
Tsp45I GTSAC 3 cut(s) 137, 224, 557
TspGWI ACGGA 1 cut(s) 168
TspRI CASTG 1 cut(s) 298
Tth111I GACNNNGTC 1 cut(s) 555
Van91I CCANNNNNTGG 1 cut(s) 252
XapI RAATTY 1 cut(s) 438
XhoI CTCGAG 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 550
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 1 cut(s) 195
ZraI GACGTC 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.