Rroxscaffold_6G00411290
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016655
Physical Location & Seq
Forward (+)
33783649 .. 33784419
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411290.1

Sequence Viewer

Length: 771 bp
ATGGGCTCCGAGATGGCCCTCCAAGACTACCTGTCCCCGGACCCACCACACCACCAACCCCAACAACACCACCACCAGCAGCAACTTCCCTCACTCAAGCGTGAGGACCCGACCCAAAACGTCGCCGTTCCGGCGGCGGTGCTCACCTCCACCACCACCGTCACCACCGTGACGACTGCTGAAGACTCGGCCAGGACGACTCAGCAGCTCAGCCGCACTCGGAGGTCGACCAACACCAAGGACCGCCACACCAAGGTCAACGGCCGCGGCCGTCGTGTCCGAATGCCCGCCATGTGCGCCGCCAGAATCTTCCAGCTGACCCGCGAGCTCGGCCACCGCTCCGACGGCGAGACCATCGAGTGGCTCCTCCGCCACGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACCCACCCGGCGCAGCTCTGCACCTCCACCCCCGCCATGTCCGCCTCAATGCCCTCCCTCCCCTGCCGCCCCACCATCAGCACCGTCAACACCACCGGAGCCGCCGGTCAGCTCATGTACCACCTCCAGCAGCACCCTGTTTCCCAGTCCCACCACCACCACCAGCAGCTGAGCTGCCGGCTCGACTTGTGCCAGCCGCTGCCTGGTTTGGACTACTCGGCGGCGGCCGGGAACAACAACGGCGGGTACCAGAACAGCCACGGGTACAACCACCATGGATTCACGGCGCTGCTGTTGCAGTCTGGAGTCGGGGACGGGGGAGACGCCGCCTCCGGAGAAGGCTCTCAGGGACTCGACTAG

Protein Analysis

256

Amino Acids

27.59

Weight (kDa)

7.32

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 78 - 172 4.1e-26 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016655)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37000
fragaria_vesca FvH4_6g16170
malus_domestica MD12G1115100.v1.1
prunus_persica Prupe.6G234200_v2.0.a1
pyrus_communis pycom12g11440
rosa_chinensis RchiOBHm_Chr3g0470021
rosa_laevigata RLG00000024303
rosa_multiflora Rmu_sc0017440.1_g000006
rosa_roxburghii Rroxscaffold_6G00411290
rosa_rugosa Rorug03G0106100
rosa_samantha Rh3BG179400 Rh3CG170000 Rh3DG195700
rosa_wichuraiana Rw3G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 657
AccB1I GGYRCC 3 cut(s) 404, 410, 657
AccB7I CCANNNNNTGG 1 cut(s) 360
AccBSI CCGCTC 1 cut(s) 339
AccI GTMKAC 1 cut(s) 227
AccII CGCG 2 cut(s) 267, 324
AccIII TCCGGA 1 cut(s) 743
AcoI YGGCCR 5 cut(s) 189, 262, 268, 331, 636
AcuI CTGAAG 1 cut(s) 201
AcyI GRCGYC 1 cut(s) 735
AfaI GTAC 3 cut(s) 530, 659, 677
AfiI CCNNNNNNNGG 4 cut(s) 37, 253, 360, 614
AhdI GACNNNNNGTC 1 cut(s) 31
AjnI CCWGG 2 cut(s) 191, 613
AleI CACNNNNGTG 1 cut(s) 167
AluBI AGCT 7 cut(s) 208, 316, 328, 427, 523, 580, 585
AluI AGCT 7 cut(s) 208, 316, 328, 427, 523, 580, 585
Alw21I GWGCWC 2 cut(s) 144, 330
Alw26I GTCTC 2 cut(s) 344, 726
AlwNI CAGNNNCTG 2 cut(s) 580, 610
Aor13HI TCCGGA 1 cut(s) 743
AoxI GGCC 6 cut(s) 15, 189, 262, 268, 331, 636
ApeKI GCWGC 8 cut(s) 79, 205, 424, 541, 577, 585, 610, 700
Asp718I GGTACC 1 cut(s) 657
AspLEI GCGC 3 cut(s) 299, 424, 700
AspS9I GGNCC 4 cut(s) 16, 40, 106, 241
AsuC2I CCSGG 3 cut(s) 38, 419, 640
AsuHPI GGTGA 2 cut(s) 136, 154
AvaII GGWCC 3 cut(s) 40, 106, 241
BanI GGYRCC 3 cut(s) 404, 410, 657
BanII GRGCYC 3 cut(s) 8, 330, 384
BbsI GAAGAC 1 cut(s) 189
Bbv12I GWGCWC 2 cut(s) 144, 330
BbvI GCAGC 8 cut(s) 91, 217, 436, 553, 572, 589, 597, 687
BccI CCATC 4 cut(s) 7, 362, 395, 494
BceAI ACGGC 6 cut(s) 110, 255, 277, 361, 667, 711
BciT130I CCWGG 2 cut(s) 193, 615
BcnI CCSGG 3 cut(s) 38, 419, 640
BcoDI GTCTC 2 cut(s) 344, 726
BfaI CTAG 1 cut(s) 769
BfoI RGCGCY 1 cut(s) 701
BglI GCCNNNNNGGC 1 cut(s) 131
BlpI GCTNAGC 2 cut(s) 209, 581
Bme1390I CCNGG 5 cut(s) 38, 193, 419, 615, 640
Bme18I GGWCC 3 cut(s) 40, 106, 241
BmeRI GACNNNNNGTC 1 cut(s) 31
BmgT120I GGNCC 4 cut(s) 16, 40, 106, 241
BmiI GGNNCC 8 cut(s) 7, 42, 108, 365, 406, 412, 511, 659
BmrFI CCNGG 5 cut(s) 38, 193, 419, 615, 640
BmrI ACTGGG 1 cut(s) 550
BmuI ACTGGG 1 cut(s) 550
BpiI GAAGAC 1 cut(s) 189
BpmI CTGGAG 2 cut(s) 521, 735
Bpu1102I GCTNAGC 2 cut(s) 209, 581
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 3 cut(s) 38, 419, 640
BsaHI GRCGYC 1 cut(s) 735
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 6 cut(s) 36, 237, 252, 265, 670, 685
BsaWI WCCGGW 2 cut(s) 506, 743
BsaXI ACNNNNNCTCC 2 cut(s) 725, 755
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 253, 360, 614
Bse118I RCCGGY 4 cut(s) 401, 407, 515, 588
Bse1I ACTGG 1 cut(s) 556
BseAI TCCGGA 1 cut(s) 743
BseBI CCWGG 2 cut(s) 193, 615
BseDI CCNNGG 6 cut(s) 36, 237, 252, 265, 670, 685
BseLI CCNNNNNNNGG 4 cut(s) 37, 253, 360, 614
BseMII CTCAG 4 cut(s) 215, 223, 572, 770
BseNI ACTGG 1 cut(s) 556
BseRI GAGGAG 1 cut(s) 356
BseX3I CGGCCG 3 cut(s) 262, 268, 636
BseXI GCAGC 8 cut(s) 91, 217, 436, 553, 572, 589, 597, 687
BsgI GTGCAG 1 cut(s) 415
Bsh1236I CGCG 2 cut(s) 267, 324
Bsh1285I CGRYCG 3 cut(s) 265, 271, 639
BshFI GGCC 6 cut(s) 17, 191, 264, 270, 333, 638
BshNI GGYRCC 3 cut(s) 404, 410, 657
BsiEI CGRYCG 3 cut(s) 265, 271, 639
BsiHKAI GWGCWC 2 cut(s) 144, 330
BslFI GGGAC 3 cut(s) 19, 544, 737
BslI CCNNNNNNNGG 4 cut(s) 37, 253, 360, 614
BsmAI GTCTC 2 cut(s) 344, 726
BsmBI CGTCTC 1 cut(s) 726
BsmFI GGGAC 3 cut(s) 19, 544, 737
BsmI GAATGC 1 cut(s) 288
BsnI GGCC 6 cut(s) 17, 191, 264, 270, 333, 638
Bso31I GGTCTC 1 cut(s) 344
Bsp1286I GDGCHC 4 cut(s) 8, 144, 330, 384
Bsp13I TCCGGA 1 cut(s) 743
Bsp1720I GCTNAGC 2 cut(s) 209, 581
Bsp19I CCATGG 1 cut(s) 685
BspANI GGCC 6 cut(s) 17, 191, 264, 270, 333, 638
BspCNI CTCAG 4 cut(s) 214, 222, 573, 769
BspEI TCCGGA 1 cut(s) 743
BspFNI CGCG 2 cut(s) 267, 324
BspLI GGNNCC 8 cut(s) 7, 42, 108, 365, 406, 412, 511, 659
BspT107I GGYRCC 3 cut(s) 404, 410, 657
BspTNI GGTCTC 1 cut(s) 344
BsrBI CCGCTC 1 cut(s) 339
BsrFI RCCGGY 4 cut(s) 401, 407, 515, 588
BsrI ACTGG 1 cut(s) 556
BssAI RCCGGY 4 cut(s) 401, 407, 515, 588
BssECI CCNNGG 6 cut(s) 36, 237, 252, 265, 670, 685
BssNI GRCGYC 1 cut(s) 735
BssT1I CCWWGG 3 cut(s) 237, 252, 685
Bst2UI CCWGG 2 cut(s) 193, 615
Bst4CI ACNGT 3 cut(s) 160, 169, 496
BstACI GRCGYC 1 cut(s) 735
BstC8I GCNNGC 4 cut(s) 288, 326, 590, 605
BstDEI CTNAG 4 cut(s) 201, 209, 581, 756
BstDSI CCRYGG 3 cut(s) 265, 670, 685
BstFNI CGCG 2 cut(s) 267, 324
BstH2I RGCGCY 1 cut(s) 701
BstHHI GCGC 3 cut(s) 299, 424, 700
BstMAI GTCTC 2 cut(s) 344, 726
BstMCI CGRYCG 3 cut(s) 265, 271, 639
BstMWI GCNNNNNNNGC 6 cut(s) 131, 296, 330, 345, 452, 706
BstNI CCWGG 2 cut(s) 193, 615
BstSCI CCNGG 5 cut(s) 36, 191, 417, 613, 638
BstUI CGCG 2 cut(s) 267, 324
BstV1I GCAGC 8 cut(s) 91, 217, 436, 553, 572, 589, 597, 687
BstV2I GAAGAC 1 cut(s) 189
BstZI CGGCCG 3 cut(s) 262, 268, 636
BsuRI GGCC 6 cut(s) 17, 191, 264, 270, 333, 638
BtgI CCRYGG 3 cut(s) 265, 670, 685
BtgZI GCGATG 1 cut(s) 376
Cac8I GCNNGC 4 cut(s) 288, 326, 590, 605
CaiI CAGNNNCTG 2 cut(s) 580, 610
CfoI GCGC 3 cut(s) 299, 424, 700
Cfr10I RCCGGY 4 cut(s) 401, 407, 515, 588
Cfr13I GGNCC 4 cut(s) 16, 40, 106, 241
Cfr42I CCGCGG 1 cut(s) 268
CseI GACGC 1 cut(s) 743
Csp6I GTAC 3 cut(s) 529, 658, 676
CviAII CATG 4 cut(s) 292, 448, 526, 686
CviQI GTAC 3 cut(s) 529, 658, 676
DdeI CTNAG 4 cut(s) 201, 209, 581, 756
DriI GACNNNNNGTC 1 cut(s) 31
EaeI YGGCCR 5 cut(s) 189, 262, 268, 331, 636
EagI CGGCCG 3 cut(s) 262, 268, 636
Eam1105I GACNNNNNGTC 1 cut(s) 31
EciI GGCGGA 2 cut(s) 359, 442
Ecl136II GAGCTC 1 cut(s) 328
EclXI CGGCCG 3 cut(s) 262, 268, 636
Eco130I CCWWGG 3 cut(s) 237, 252, 685
Eco24I GRGCYC 3 cut(s) 8, 330, 384
Eco31I GGTCTC 1 cut(s) 344
Eco47I GGWCC 3 cut(s) 40, 106, 241
Eco52I CGGCCG 3 cut(s) 262, 268, 636
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 201
EcoICRI GAGCTC 1 cut(s) 328
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 2 cut(s) 191, 613
EcoT14I CCWWGG 3 cut(s) 237, 252, 685
EcoT38I GRGCYC 3 cut(s) 8, 330, 384
ErhI CCWWGG 3 cut(s) 237, 252, 685
Esp3I CGTCTC 1 cut(s) 726
FaeI CATG 4 cut(s) 295, 451, 529, 689
FaiI YATR 4 cut(s) 293, 449, 527, 687
FaqI GGGAC 3 cut(s) 19, 544, 737
FatI CATG 4 cut(s) 291, 447, 525, 685
FauI CCCGC 4 cut(s) 295, 329, 451, 647
FblI GTMKAC 1 cut(s) 227
FriOI GRGCYC 3 cut(s) 8, 330, 384
FspBI CTAG 1 cut(s) 769
GlaI GCGC 3 cut(s) 298, 423, 699
GsuI CTGGAG 2 cut(s) 521, 735
HaeII RGCGCY 1 cut(s) 701
HaeIII GGCC 6 cut(s) 17, 191, 264, 270, 333, 638
HgaI GACGC 1 cut(s) 743
HhaI GCGC 3 cut(s) 299, 424, 700
Hin1I GRCGYC 1 cut(s) 735
Hin1II CATG 4 cut(s) 295, 451, 529, 689
Hin6I GCGC 3 cut(s) 297, 422, 698
HinP1I GCGC 3 cut(s) 297, 422, 698
HincII GTYRAC 3 cut(s) 228, 259, 499
HindII GTYRAC 3 cut(s) 228, 259, 499
HinfI GANTC 6 cut(s) 185, 199, 306, 690, 717, 762
HphI GGTGA 2 cut(s) 136, 154
Hpy166II GTNNAC 3 cut(s) 228, 259, 499
Hpy188I TCNGA 4 cut(s) 10, 222, 281, 343
Hpy188III TCNNGA 2 cut(s) 714, 744
Hpy8I GTNNAC 3 cut(s) 228, 259, 499
Hpy99I CGWCG 3 cut(s) 125, 276, 347
HpyAV CCTTC 1 cut(s) 743
HpyCH4III ACNGT 3 cut(s) 160, 169, 496
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 2 cut(s) 432, 709
HpyF10VI GCNNNNNNNGC 6 cut(s) 131, 296, 330, 345, 452, 706
HpyF3I CTNAG 4 cut(s) 201, 209, 581, 756
HpySE526I ACGT 1 cut(s) 120
Hsp92I GRCGYC 1 cut(s) 735
Hsp92II CATG 4 cut(s) 295, 451, 529, 689
HspAI GCGC 3 cut(s) 297, 422, 698
Kpn2I TCCGGA 1 cut(s) 743
KpnI GGTACC 1 cut(s) 661
KroI GCCGGC 1 cut(s) 588
KroNI GCCGGC 1 cut(s) 590
KspI CCGCGG 1 cut(s) 268
LmnI GCTCC 4 cut(s) 11, 344, 369, 509
Lsp1109I GCAGC 8 cut(s) 91, 217, 436, 553, 572, 589, 597, 687
MaeI CTAG 1 cut(s) 769
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 2 cut(s) 160, 169
MbiI CCGCTC 1 cut(s) 339
MboII GAAGA 2 cut(s) 194, 301
MhlI GDGCHC 4 cut(s) 8, 144, 330, 384
MlyI GAGTC 4 cut(s) 179, 193, 726, 756
MmeI TCCRAC 1 cut(s) 366
MroI TCCGGA 1 cut(s) 743
MroNI GCCGGC 1 cut(s) 588
MslI CAYNNNNRTG 1 cut(s) 167
MspA1I CMGCKG 4 cut(s) 267, 316, 580, 610
MspR9I CCNGG 5 cut(s) 38, 193, 419, 615, 640
Mva1269I GAATGC 1 cut(s) 288
MvaI CCWGG 2 cut(s) 193, 615
MvnI CGCG 2 cut(s) 267, 324
MwoI GCNNNNNNNGC 6 cut(s) 131, 296, 330, 345, 452, 706
NaeI GCCGGC 1 cut(s) 590
NciI CCSGG 3 cut(s) 38, 419, 640
NcoI CCATGG 1 cut(s) 685
NgoMIV GCCGGC 1 cut(s) 588
NlaIII CATG 4 cut(s) 295, 451, 529, 689
NlaIV GGNNCC 8 cut(s) 7, 42, 108, 365, 406, 412, 511, 659
NmeAIII GCCGAG 4 cut(s) 167, 309, 403, 608
NmuCI GTSAC 2 cut(s) 160, 169
OliI CACNNNNGTG 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 194
PctI GAATGC 1 cut(s) 288
PdiI GCCGGC 1 cut(s) 590
PfeI GAWTC 2 cut(s) 306, 690
PflMI CCANNNNNTGG 1 cut(s) 360
PleI GAGTC 4 cut(s) 179, 193, 725, 756
PpsI GAGTC 4 cut(s) 179, 193, 725, 756
PpuMI RGGWCCY 1 cut(s) 106
Psp124BI GAGCTC 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 2 cut(s) 191, 613
PspGI CCWGG 2 cut(s) 191, 613
PspN4I GGNNCC 8 cut(s) 7, 42, 108, 365, 406, 412, 511, 659
PspPI GGNCC 4 cut(s) 16, 40, 106, 241
PspPPI RGGWCCY 1 cut(s) 106
PstNI CAGNNNCTG 2 cut(s) 580, 610
PvuII CAGCTG 2 cut(s) 316, 580
RsaI GTAC 3 cut(s) 530, 659, 677
RsaNI GTAC 3 cut(s) 529, 658, 676
RseI CAYNNNNRTG 1 cut(s) 167
SacI GAGCTC 1 cut(s) 330
SacII CCGCGG 1 cut(s) 268
SalI GTCGAC 1 cut(s) 226
Sau96I GGNCC 4 cut(s) 16, 40, 106, 241
SchI GAGTC 4 cut(s) 179, 193, 726, 756
ScrFI CCNGG 5 cut(s) 38, 193, 419, 615, 640
SduI GDGCHC 4 cut(s) 8, 144, 330, 384
Sfr303I CCGCGG 1 cut(s) 268
SgrBI CCGCGG 1 cut(s) 268
SinI GGWCC 3 cut(s) 40, 106, 241
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SspMI CTAG 1 cut(s) 769
SstI GAGCTC 1 cut(s) 330
StyD4I CCNGG 5 cut(s) 36, 191, 417, 613, 638
StyI CCWWGG 3 cut(s) 237, 252, 685
TaaI ACNGT 3 cut(s) 160, 169, 496
TaiI ACGT 1 cut(s) 123
TaqI TCGA 4 cut(s) 227, 357, 594, 765
TfiI GAWTC 2 cut(s) 306, 690
TseFI GTSAC 2 cut(s) 160, 169
TseI GCWGC 8 cut(s) 79, 205, 424, 541, 577, 585, 610, 700
Tsp45I GTSAC 2 cut(s) 160, 169
Van91I CCANNNNNTGG 1 cut(s) 360
VpaK11BI GGWCC 3 cut(s) 40, 106, 241
XcmI CCANNNNNNNNNTGG 1 cut(s) 611
XmiI GTMKAC 1 cut(s) 227
XspI CTAG 1 cut(s) 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.