Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016655

Physical Location & Seq

Genomic Coordinates Forward (+)

23576364 .. 23577409

Gene Structure 1046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G234200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCATTTATTCAATTCCGCGTCTTCCAGGGACCGCCACACCAAAGTCAATGGCCGGGGACGGCGAGTCCGGATGCCGGCCATGTGCGCCGCCCGGATCTTTCAGCTGACCCGGGAGCTCGGCCACCGCTCCGACGGGGAGACCATCGAATGGCTCCTCCGCCACGCCGAGTCCTCCATCGTCGCCGCCACCGGTACCGGCACTCTCCCGGCCGAGCCGATTTCGACCTCCGCCCCCTCCGTCTCCTCCCAAGTGCCCTCCCTCGCTTGCCGGGCCCACCCGCTCAGCTCCCTCAACGGCGGCGGGCAGTTCATGTACCCGCTAGTGTCGTCGGCTCATCAGGCTCAACCGAATCAGCCGCATCAGCAGCCGAGCATTCGGCTGGACTTGTGCCAGCCGGCGGGGTTGGACTACACCGAGTACAGGCAGCACATGCCGTTCACGTCGTTGCTGCTGCATCCGGCGGAGAATGAGGAGGAGGAGGATGGGCAGCAGGAGGAGGCTCTGTGTCTTGAGGATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007623 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048511 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

175

Amino Acids

19.11

Weight (kDa)

5.81

Isoelectric Point (pI)

67.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37000
fragaria_vesca	FvH4_6g16170
malus_domestica	MD12G1115100.v1.1
prunus_persica	Prupe.6G234200_v2.0.a1
pyrus_communis	pycom12g11440
rosa_chinensis	RchiOBHm_Chr3g0470021
rosa_laevigata	RLG00000024303
rosa_multiflora	Rmu_sc0017440.1_g000006
rosa_roxburghii	Rroxscaffold_6G00411290
rosa_rugosa	Rorug03G0106100
rosa_samantha	Rh3BG179400 Rh3CG170000 Rh3DG195700
rosa_wichuraiana	Rw3G014630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	194
AccB7I	CCANNNNNTGG	1 cut(s)	150
AccBSI	CCGCTC	2 cut(s)	129, 283
AccII	CGCG	1 cut(s)	20
AccIII	TCCGGA	1 cut(s)	69
AclWI	GGATC	1 cut(s)	104
AcoI	YGGCCR	4 cut(s)	52, 78, 121, 210
AfaI	GTAC	3 cut(s)	196, 317, 422
AfiI	CCNNNNNNNGG	4 cut(s)	76, 150, 400, 423
AgeI	ACCGGT	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	13
AhdI	GACNNNNNGTC	1 cut(s)	65
AjiI	CACGTC	1 cut(s)	444
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	3 cut(s)	106, 118, 288
AluI	AGCT	3 cut(s)	106, 118, 288
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	2 cut(s)	134, 247
AlwI	GGATC	1 cut(s)	104
Ama87I	CYCGRG	1 cut(s)	111
Aor13HI	TCCGGA	1 cut(s)	69
AoxI	GGCC	5 cut(s)	52, 78, 121, 210, 273
ApaI	GGGCCC	1 cut(s)	277
ApeKI	GCWGC	5 cut(s)	367, 427, 451, 454, 490
AsiGI	ACCGGT	1 cut(s)	191
Asp718I	GGTACC	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	3 cut(s)	31, 273, 274
AsuC2I	CCSGG	6 cut(s)	56, 94, 112, 113, 209, 272
AvaI	CYCGRG	1 cut(s)	111
AvaII	GGWCC	1 cut(s)	31
BaeGI	GKGCMC	2 cut(s)	258, 277
BanI	GGYRCC	1 cut(s)	194
BanII	GRGCYC	2 cut(s)	120, 277
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	5 cut(s)	379, 438, 439, 441, 502
BccI	CCATC	4 cut(s)	152, 185, 479, 512
BceAI	ACGGC	3 cut(s)	77, 313, 421
BciT130I	CCWGG	1 cut(s)	28
BcnI	CCSGG	6 cut(s)	56, 94, 112, 113, 209, 272
BcoDI	GTCTC	2 cut(s)	134, 247
BfaI	CTAG	1 cut(s)	323
BisI	GCNGC	9 cut(s)	90, 186, 301, 359, 368, 428, 452, 455, 491
BlpI	GCTNAGC	1 cut(s)	284
BlsI	GCNGC	9 cut(s)	91, 187, 302, 360, 369, 429, 453, 456, 492
Bme1390I	CCNGG	7 cut(s)	28, 56, 94, 112, 113, 209, 272
Bme18I	GGWCC	1 cut(s)	31
BmeRI	GACNNNNNGTC	1 cut(s)	65
BmeT110I	CYCGRG	1 cut(s)	111
BmgBI	CACGTC	1 cut(s)	444
BmgT120I	GGNCC	3 cut(s)	31, 273, 274
BmiI	GGNNCC	4 cut(s)	32, 155, 196, 275
BmrFI	CCNGG	7 cut(s)	28, 56, 94, 112, 113, 209, 272
BmsI	GCATC	3 cut(s)	63, 370, 466
BpiI	GAAGAC	1 cut(s)	15
Bpu1102I	GCTNAGC	1 cut(s)	284
BpuMI	CCSGG	6 cut(s)	56, 94, 112, 113, 209, 272
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	3 cut(s)	27, 55, 111
BsaWI	WCCGGW	2 cut(s)	69, 191
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 150, 400, 423
Bse118I	RCCGGY	4 cut(s)	76, 191, 197, 397
BseAI	TCCGGA	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	28
BseDI	CCNNGG	3 cut(s)	27, 55, 111
BseGI	GGATG	4 cut(s)	78, 457, 490, 523
BseLI	CCNNNNNNNGG	4 cut(s)	76, 150, 400, 423
BseMII	CTCAG	1 cut(s)	298
BseRI	GAGGAG	6 cut(s)	146, 235, 488, 491, 494, 512
BseSI	GKGCMC	2 cut(s)	258, 277
BseX3I	CGGCCG	1 cut(s)	210
BseXI	GCAGC	5 cut(s)	379, 438, 439, 441, 502
Bsh1236I	CGCG	1 cut(s)	20
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	5 cut(s)	54, 80, 123, 212, 275
BshNI	GGYRCC	1 cut(s)	194
BshTI	ACCGGT	1 cut(s)	191
BsiEI	CGRYCG	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	111
BslFI	GGGAC	2 cut(s)	44, 72
BslI	CCNNNNNNNGG	4 cut(s)	76, 150, 400, 423
BsmAI	GTCTC	2 cut(s)	134, 247
BsmBI	CGTCTC	1 cut(s)	247
BsmFI	GGGAC	2 cut(s)	44, 72
BsmI	GAATGC	1 cut(s)	375
BsnI	GGCC	5 cut(s)	54, 80, 123, 212, 275
Bso31I	GGTCTC	1 cut(s)	134
BsoBI	CYCGRG	1 cut(s)	111
Bsp120I	GGGCCC	1 cut(s)	273
Bsp1286I	GDGCHC	3 cut(s)	120, 258, 277
Bsp13I	TCCGGA	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	96
Bsp1720I	GCTNAGC	1 cut(s)	284
BspANI	GGCC	5 cut(s)	54, 80, 123, 212, 275
BspCNI	CTCAG	1 cut(s)	297
BspEI	TCCGGA	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	4 cut(s)	32, 155, 196, 275
BspPI	GGATC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	134
BsrBI	CCGCTC	2 cut(s)	129, 283
BsrFI	RCCGGY	4 cut(s)	76, 191, 197, 397
BssAI	RCCGGY	4 cut(s)	76, 191, 197, 397
BssECI	CCNNGG	3 cut(s)	27, 55, 111
BssMI	GATC	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	28
BstAPI	GCANNNNNTGC	1 cut(s)	433
BstC8I	GCNNGC	5 cut(s)	78, 268, 305, 395, 399
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	4 cut(s)	78, 457, 490, 523
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	1 cut(s)	99
BstMAI	GTCTC	2 cut(s)	134, 247
BstMBI	GATC	1 cut(s)	96
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	6 cut(s)	86, 272, 341, 364, 367, 433
BstNI	CCWGG	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	7 cut(s)	26, 54, 92, 110, 111, 207, 270
BstSLI	GKGCMC	2 cut(s)	258, 277
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	5 cut(s)	379, 438, 439, 441, 502
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
BstZI	CGGCCG	1 cut(s)	210
BsuRI	GGCC	5 cut(s)	54, 80, 123, 212, 275
BtrI	CACGTC	1 cut(s)	444
BtsCI	GGATG	4 cut(s)	78, 457, 490, 523
Cac8I	GCNNGC	5 cut(s)	78, 268, 305, 395, 399
CfoI	GCGC	1 cut(s)	89
Cfr10I	RCCGGY	4 cut(s)	76, 191, 197, 397
Cfr13I	GGNCC	3 cut(s)	31, 273, 274
Cfr9I	CCCGGG	1 cut(s)	111
CseI	GACGC	1 cut(s)	9
Csp6I	GTAC	3 cut(s)	195, 316, 421
CspAI	ACCGGT	1 cut(s)	191
CviAII	CATG	3 cut(s)	82, 313, 433
CviQI	GTAC	3 cut(s)	195, 316, 421
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
DriI	GACNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	4 cut(s)	52, 78, 121, 210
EagI	CGGCCG	1 cut(s)	210
Eam1105I	GACNNNNNGTC	1 cut(s)	65
EciI	GGCGGA	3 cut(s)	149, 220, 479
Ecl136II	GAGCTC	1 cut(s)	118
EclXI	CGGCCG	1 cut(s)	210
Eco24I	GRGCYC	2 cut(s)	120, 277
Eco31I	GGTCTC	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	31
Eco52I	CGGCCG	1 cut(s)	210
Eco53kI	GAGCTC	1 cut(s)	118
Eco88I	CYCGRG	1 cut(s)	111
EcoICRI	GAGCTC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	26
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	120, 277
Esp3I	CGTCTC	1 cut(s)	247
FaeI	CATG	3 cut(s)	85, 316, 436
FaiI	YATR	3 cut(s)	83, 314, 434
FaqI	GGGAC	2 cut(s)	44, 72
FatI	CATG	3 cut(s)	81, 312, 432
FauI	CCCGC	4 cut(s)	288, 296, 327, 394
Fnu4HI	GCNGC	9 cut(s)	90, 186, 301, 359, 368, 428, 452, 455, 491
FokI	GGATG	3 cut(s)	85, 444, 497
FriOI	GRGCYC	2 cut(s)	120, 277
Fsp4HI	GCNGC	9 cut(s)	90, 186, 301, 359, 368, 428, 452, 455, 491
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	9 cut(s)	90, 186, 301, 359, 368, 428, 452, 455, 491
HaeIII	GGCC	5 cut(s)	54, 80, 123, 212, 275
HgaI	GACGC	1 cut(s)	9
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	3 cut(s)	85, 316, 436
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HinfI	GANTC	3 cut(s)	66, 170, 352
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	2 cut(s)	70, 512
Hpy8I	GTNNAC	1 cut(s)	441
Hpy99I	CGWCG	4 cut(s)	137, 185, 334, 448
HpyCH4IV	ACGT	1 cut(s)	443
HpyCH4V	TGCA	2 cut(s)	4, 457
HpyF10VI	GCNNNNNNNGC	6 cut(s)	86, 272, 341, 364, 367, 433
HpyF3I	CTNAG	1 cut(s)	284
HpySE526I	ACGT	1 cut(s)	443
Hsp92II	CATG	3 cut(s)	85, 316, 436
HspAI	GCGC	1 cut(s)	87
Kpn2I	TCCGGA	1 cut(s)	69
KpnI	GGTACC	1 cut(s)	198
KroI	GCCGGC	2 cut(s)	76, 397
KroNI	GCCGGC	2 cut(s)	78, 399
Kzo9I	GATC	1 cut(s)	96
LmnI	GCTCC	4 cut(s)	115, 134, 159, 293
Lsp1109I	GCAGC	5 cut(s)	379, 438, 439, 441, 502
LweI	GCATC	3 cut(s)	63, 370, 466
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	1 cut(s)	443
MalI	GATC	1 cut(s)	98
MbiI	CCGCTC	2 cut(s)	129, 283
MboI	GATC	1 cut(s)	96
MboII	GAAGA	1 cut(s)	15
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	3 cut(s)	120, 258, 277
MluCI	AATT	1 cut(s)	13
MlyI	GAGTC	2 cut(s)	75, 179
MmeI	TCCRAC	2 cut(s)	156, 387
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	69
MroNI	GCCGGC	2 cut(s)	76, 397
MspA1I	CMGCKG	1 cut(s)	106
MspR9I	CCNGG	7 cut(s)	28, 56, 94, 112, 113, 209, 272
Mva1269I	GAATGC	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	28
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	6 cut(s)	86, 272, 341, 364, 367, 433
NaeI	GCCGGC	2 cut(s)	78, 399
NciI	CCSGG	6 cut(s)	56, 94, 112, 113, 209, 272
NdeII	GATC	1 cut(s)	96
NgoMIV	GCCGGC	2 cut(s)	76, 397
NlaIII	CATG	3 cut(s)	85, 316, 436
NlaIV	GGNNCC	4 cut(s)	32, 155, 196, 275
NmeAIII	GCCGAG	4 cut(s)	99, 193, 238, 396
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	436
PctI	GAATGC	1 cut(s)	375
PdiI	GCCGGC	2 cut(s)	78, 399
PfeI	GAWTC	1 cut(s)	352
PflMI	CCANNNNNTGG	1 cut(s)	150
PinAI	ACCGGT	1 cut(s)	191
PkrI	GCNGC	9 cut(s)	91, 187, 302, 360, 369, 429, 453, 456, 492
PleI	GAGTC	2 cut(s)	74, 178
PpsI	GAGTC	2 cut(s)	74, 178
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PspN4I	GGNNCC	4 cut(s)	32, 155, 196, 275
PspOMI	GGGCCC	1 cut(s)	273
PspPI	GGNCC	3 cut(s)	31, 273, 274
PsuI	RGATCY	1 cut(s)	96
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	3 cut(s)	196, 317, 422
RsaNI	GTAC	3 cut(s)	195, 316, 421
SacI	GAGCTC	1 cut(s)	120
SatI	GCNGC	9 cut(s)	90, 186, 301, 359, 368, 428, 452, 455, 491
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	3 cut(s)	31, 273, 274
SchI	GAGTC	2 cut(s)	75, 179
ScrFI	CCNGG	7 cut(s)	28, 56, 94, 112, 113, 209, 272
SduI	GDGCHC	3 cut(s)	120, 258, 277
SetI	ASST	5 cut(s)	108, 120, 230, 290, 446
SfaNI	GCATC	3 cut(s)	63, 370, 466
SinI	GGWCC	1 cut(s)	31
SmaI	CCCGGG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	1 cut(s)	13
SspMI	CTAG	1 cut(s)	323
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	7 cut(s)	26, 54, 92, 110, 111, 207, 270
TaiI	ACGT	1 cut(s)	446
TaqI	TCGA	2 cut(s)	147, 224
TasI	AATT	1 cut(s)	13
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	4 cut(s)	92, 188, 303, 361
TfiI	GAWTC	1 cut(s)	352
TseI	GCWGC	5 cut(s)	367, 427, 451, 454, 490
TspDTI	ATGAA	1 cut(s)	301
TspGWI	ACGGA	1 cut(s)	229
TspMI	CCCGGG	1 cut(s)	111
Van91I	CCANNNNNTGG	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	31
XceI	RCATGY	1 cut(s)	436
XmaI	CCCGGG	1 cut(s)	111
XspI	CTAG	1 cut(s)	323
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.