RchiOBHm_Chr3g0470021
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016655
Physical Location & Seq
Reverse (-)
15980979 .. 15982526
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43584

Sequence Viewer

Length: 750 bp
ATGGGCTCCGAGATGGCCCTCCAAGACTACCTGTCCCCGGACCCACCACACCACCACCACCACCAACTTCCCACACTCAAGCGTGAGGACCCTACCCAAAACGTCGCCGTTCCGGCGGCGGTGCTCACCTCCACCACGACCGTCACTACCGTGACGACTGCTGAAGACTCGGCCAGGACGACTCAGCAGCTCAGCCGCACTCGGAGGTCGGCCAACACCAAGGACCGCCACACCAAGGTCAACGGCCGCGGCCGCCGTGTCCGAATGCCCGCCATGTGCGCCGCCAGAATCTTCCAGCTGACCCGCGAGCTCGGCCACCGCTCCGACGGCGAGACCATCGAGTGGCTCCTCCGCCACGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACACACCCGGCGCAGCTCTGCACCTCCACCCCCGCCATCTCCGCCTCAATGCCCTCCCTCCACTGCCGCCCCACCATCAGCACCGTCAACACCACCGGCGCCGCCGGTCAGCTCGTGTACCACCTCCAGCAGCACCCTGTTTCCCAGTCCCACCAGCAGCAGCAGCTGAGCTGCCGGCTTGACTTGTGCCAGCCGCTGCCCGGTTTGGACTACTCGGCTGTGGCCGGGAACAACAACGGCGGGTACCAGAACAGCCACGGGTACAACCACCATGGATTCACGGCGCTGCTGTTGCAGTCTGGAGTGGGGGACGGGGGAGACGCCGCCTCCGGAGAAGGCTCTCAGGGACTCGACTAG

Protein Analysis

249

Amino Acids

26.7

Weight (kDa)

7.29

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 72 - 172 3.5e-26 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016655)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37000
fragaria_vesca FvH4_6g16170
malus_domestica MD12G1115100.v1.1
prunus_persica Prupe.6G234200_v2.0.a1
pyrus_communis pycom12g11440
rosa_chinensis RchiOBHm_Chr3g0470021
rosa_laevigata RLG00000024303
rosa_multiflora Rmu_sc0017440.1_g000006
rosa_roxburghii Rroxscaffold_6G00411290
rosa_rugosa Rorug03G0106100
rosa_samantha Rh3BG179400 Rh3CG170000 Rh3DG195700
rosa_wichuraiana Rw3G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 636
AccB1I GGYRCC 3 cut(s) 386, 491, 636
AccB7I CCANNNNNTGG 1 cut(s) 342
AccBSI CCGCTC 1 cut(s) 321
AccII CGCG 2 cut(s) 249, 306
AccIII TCCGGA 1 cut(s) 722
AcoI YGGCCR 6 cut(s) 171, 210, 244, 250, 313, 615
AcuI CTGAAG 1 cut(s) 183
AcyI GRCGYC 2 cut(s) 492, 714
AfaI GTAC 3 cut(s) 512, 638, 656
AfiI CCNNNNNNNGG 4 cut(s) 37, 235, 342, 593
AhdI GACNNNNNGTC 1 cut(s) 31
AjnI CCWGG 1 cut(s) 173
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 7 cut(s) 190, 298, 310, 409, 505, 559, 564
AluI AGCT 7 cut(s) 190, 298, 310, 409, 505, 559, 564
Alw21I GWGCWC 2 cut(s) 126, 312
Alw26I GTCTC 2 cut(s) 326, 705
AlwNI CAGNNNCTG 2 cut(s) 559, 589
Aor13HI TCCGGA 1 cut(s) 722
AoxI GGCC 7 cut(s) 15, 171, 210, 244, 250, 313, 615
ApeKI GCWGC 9 cut(s) 187, 406, 523, 550, 553, 556, 564, 589, 679
Asp718I GGTACC 1 cut(s) 636
AspLEI GCGC 4 cut(s) 281, 406, 494, 679
AspS9I GGNCC 4 cut(s) 16, 40, 88, 223
AsuC2I CCSGG 4 cut(s) 38, 401, 594, 619
AsuHPI GGTGA 1 cut(s) 118
AvaII GGWCC 3 cut(s) 40, 88, 223
BanI GGYRCC 3 cut(s) 386, 491, 636
BanII GRGCYC 3 cut(s) 8, 312, 366
BauI CACGAG 1 cut(s) 506
BbsI GAAGAC 1 cut(s) 171
Bbv12I GWGCWC 2 cut(s) 126, 312
BbvI GCAGC 9 cut(s) 199, 418, 535, 551, 562, 565, 568, 576, 666
BccI CCATC 5 cut(s) 7, 344, 377, 437, 476
BceAI ACGGC 6 cut(s) 92, 240, 259, 343, 646, 690
BciT130I CCWGG 1 cut(s) 175
BcnI CCSGG 4 cut(s) 38, 401, 594, 619
BcoDI GTCTC 2 cut(s) 326, 705
BfaI CTAG 1 cut(s) 748
BfoI RGCGCY 2 cut(s) 495, 680
BglI GCCNNNNNGGC 1 cut(s) 113
BlpI GCTNAGC 2 cut(s) 191, 560
Bme1390I CCNGG 5 cut(s) 38, 175, 401, 594, 619
Bme18I GGWCC 3 cut(s) 40, 88, 223
BmeRI GACNNNNNGTC 1 cut(s) 31
BmgT120I GGNCC 4 cut(s) 16, 40, 88, 223
BmiI GGNNCC 7 cut(s) 7, 42, 90, 347, 388, 493, 638
BmrFI CCNGG 5 cut(s) 38, 175, 401, 594, 619
BmrI ACTGGG 1 cut(s) 532
BmuI ACTGGG 1 cut(s) 532
BpiI GAAGAC 1 cut(s) 171
BpmI CTGGAG 2 cut(s) 503, 714
Bpu1102I GCTNAGC 2 cut(s) 191, 560
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 4 cut(s) 38, 401, 594, 619
BsaHI GRCGYC 2 cut(s) 492, 714
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 6 cut(s) 36, 219, 234, 247, 649, 664
BsaWI WCCGGW 1 cut(s) 722
BsaXI ACNNNNNCTCC 2 cut(s) 704, 734
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 235, 342, 593
Bse118I RCCGGY 5 cut(s) 383, 389, 488, 497, 567
Bse1I ACTGG 1 cut(s) 538
BseAI TCCGGA 1 cut(s) 722
BseBI CCWGG 1 cut(s) 175
BseDI CCNNGG 6 cut(s) 36, 219, 234, 247, 649, 664
BseLI CCNNNNNNNGG 4 cut(s) 37, 235, 342, 593
BseMII CTCAG 4 cut(s) 197, 205, 551, 749
BseNI ACTGG 1 cut(s) 538
BseRI GAGGAG 1 cut(s) 338
BseX3I CGGCCG 2 cut(s) 244, 250
BseXI GCAGC 9 cut(s) 199, 418, 535, 551, 562, 565, 568, 576, 666
BsgI GTGCAG 1 cut(s) 397
Bsh1236I CGCG 2 cut(s) 249, 306
Bsh1285I CGRYCG 3 cut(s) 141, 247, 253
BshFI GGCC 7 cut(s) 17, 173, 212, 246, 252, 315, 617
BshNI GGYRCC 3 cut(s) 386, 491, 636
BsiEI CGRYCG 3 cut(s) 141, 247, 253
BsiHKAI GWGCWC 2 cut(s) 126, 312
BslFI GGGAC 3 cut(s) 19, 526, 716
BslI CCNNNNNNNGG 4 cut(s) 37, 235, 342, 593
BsmAI GTCTC 2 cut(s) 326, 705
BsmBI CGTCTC 1 cut(s) 705
BsmFI GGGAC 3 cut(s) 19, 526, 716
BsmI GAATGC 1 cut(s) 270
BsnI GGCC 7 cut(s) 17, 173, 212, 246, 252, 315, 617
Bso31I GGTCTC 1 cut(s) 326
Bsp1286I GDGCHC 4 cut(s) 8, 126, 312, 366
Bsp13I TCCGGA 1 cut(s) 722
Bsp1720I GCTNAGC 2 cut(s) 191, 560
Bsp19I CCATGG 1 cut(s) 664
BspANI GGCC 7 cut(s) 17, 173, 212, 246, 252, 315, 617
BspCNI CTCAG 4 cut(s) 196, 204, 552, 748
BspEI TCCGGA 1 cut(s) 722
BspFNI CGCG 2 cut(s) 249, 306
BspLI GGNNCC 7 cut(s) 7, 42, 90, 347, 388, 493, 638
BspT107I GGYRCC 3 cut(s) 386, 491, 636
BspTNI GGTCTC 1 cut(s) 326
BsrBI CCGCTC 1 cut(s) 321
BsrFI RCCGGY 5 cut(s) 383, 389, 488, 497, 567
BsrI ACTGG 1 cut(s) 538
BssAI RCCGGY 5 cut(s) 383, 389, 488, 497, 567
BssECI CCNNGG 6 cut(s) 36, 219, 234, 247, 649, 664
BssNI GRCGYC 2 cut(s) 492, 714
BssSI CACGAG 1 cut(s) 506
BssT1I CCWWGG 3 cut(s) 219, 234, 664
Bst2BI CACGAG 1 cut(s) 506
Bst2UI CCWGG 1 cut(s) 175
Bst4CI ACNGT 3 cut(s) 142, 151, 478
BstACI GRCGYC 2 cut(s) 492, 714
BstC8I GCNNGC 4 cut(s) 270, 308, 569, 584
BstDEI CTNAG 4 cut(s) 183, 191, 560, 735
BstDSI CCRYGG 3 cut(s) 247, 649, 664
BstFNI CGCG 2 cut(s) 249, 306
BstH2I RGCGCY 2 cut(s) 495, 680
BstHHI GCGC 4 cut(s) 281, 406, 494, 679
BstMAI GTCTC 2 cut(s) 326, 705
BstMCI CGRYCG 3 cut(s) 141, 247, 253
BstMWI GCNNNNNNNGC 8 cut(s) 113, 252, 278, 312, 327, 434, 556, 685
BstNI CCWGG 1 cut(s) 175
BstSCI CCNGG 5 cut(s) 36, 173, 399, 592, 617
BstUI CGCG 2 cut(s) 249, 306
BstV1I GCAGC 9 cut(s) 199, 418, 535, 551, 562, 565, 568, 576, 666
BstV2I GAAGAC 1 cut(s) 171
BstZI CGGCCG 2 cut(s) 244, 250
BsuRI GGCC 7 cut(s) 17, 173, 212, 246, 252, 315, 617
BtgI CCRYGG 3 cut(s) 247, 649, 664
BtgZI GCGATG 1 cut(s) 358
BtsI GCAGTG 1 cut(s) 454
BtsIMutI CAGTG 1 cut(s) 454
Cac8I GCNNGC 4 cut(s) 270, 308, 569, 584
CaiI CAGNNNCTG 2 cut(s) 559, 589
CciNI GCGGCCGC 1 cut(s) 250
CfoI GCGC 4 cut(s) 281, 406, 494, 679
Cfr10I RCCGGY 5 cut(s) 383, 389, 488, 497, 567
Cfr13I GGNCC 4 cut(s) 16, 40, 88, 223
Cfr42I CCGCGG 1 cut(s) 250
CseI GACGC 1 cut(s) 722
Csp6I GTAC 3 cut(s) 511, 637, 655
CviAII CATG 2 cut(s) 274, 665
CviQI GTAC 3 cut(s) 511, 637, 655
DdeI CTNAG 4 cut(s) 183, 191, 560, 735
DinI GGCGCC 1 cut(s) 493
DriI GACNNNNNGTC 1 cut(s) 31
EaeI YGGCCR 6 cut(s) 171, 210, 244, 250, 313, 615
EagI CGGCCG 2 cut(s) 244, 250
Eam1105I GACNNNNNGTC 1 cut(s) 31
EciI GGCGGA 2 cut(s) 341, 424
Ecl136II GAGCTC 1 cut(s) 310
EclXI CGGCCG 2 cut(s) 244, 250
Eco130I CCWWGG 3 cut(s) 219, 234, 664
Eco24I GRGCYC 3 cut(s) 8, 312, 366
Eco31I GGTCTC 1 cut(s) 326
Eco47I GGWCC 3 cut(s) 40, 88, 223
Eco52I CGGCCG 2 cut(s) 244, 250
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 173
EcoT14I CCWWGG 3 cut(s) 219, 234, 664
EcoT38I GRGCYC 3 cut(s) 8, 312, 366
EgeI GGCGCC 1 cut(s) 493
EheI GGCGCC 1 cut(s) 493
ErhI CCWWGG 3 cut(s) 219, 234, 664
Esp3I CGTCTC 1 cut(s) 705
FaeI CATG 2 cut(s) 277, 668
FaiI YATR 2 cut(s) 275, 666
FaqI GGGAC 3 cut(s) 19, 526, 716
FatI CATG 2 cut(s) 273, 664
FauI CCCGC 4 cut(s) 277, 311, 433, 626
FriOI GRGCYC 3 cut(s) 8, 312, 366
FspBI CTAG 1 cut(s) 748
GlaI GCGC 4 cut(s) 280, 405, 493, 678
GsuI CTGGAG 2 cut(s) 503, 714
HaeII RGCGCY 2 cut(s) 495, 680
HaeIII GGCC 7 cut(s) 17, 173, 212, 246, 252, 315, 617
HgaI GACGC 1 cut(s) 722
HhaI GCGC 4 cut(s) 281, 406, 494, 679
Hin1I GRCGYC 2 cut(s) 492, 714
Hin1II CATG 2 cut(s) 277, 668
Hin6I GCGC 4 cut(s) 279, 404, 492, 677
HinP1I GCGC 4 cut(s) 279, 404, 492, 677
HincII GTYRAC 2 cut(s) 241, 481
HindII GTYRAC 2 cut(s) 241, 481
HinfI GANTC 5 cut(s) 167, 181, 288, 669, 741
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 3 cut(s) 241, 481, 511
Hpy188I TCNGA 4 cut(s) 10, 204, 263, 325
Hpy188III TCNNGA 2 cut(s) 693, 723
Hpy8I GTNNAC 3 cut(s) 241, 481, 511
Hpy99I CGWCG 2 cut(s) 107, 329
HpyAV CCTTC 1 cut(s) 722
HpyCH4III ACNGT 3 cut(s) 142, 151, 478
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 2 cut(s) 414, 688
HpyF10VI GCNNNNNNNGC 8 cut(s) 113, 252, 278, 312, 327, 434, 556, 685
HpyF3I CTNAG 4 cut(s) 183, 191, 560, 735
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 2 cut(s) 492, 714
Hsp92II CATG 2 cut(s) 277, 668
HspAI GCGC 4 cut(s) 279, 404, 492, 677
KasI GGCGCC 1 cut(s) 491
Kpn2I TCCGGA 1 cut(s) 722
KpnI GGTACC 1 cut(s) 640
KroI GCCGGC 1 cut(s) 567
KroNI GCCGGC 1 cut(s) 569
KspI CCGCGG 1 cut(s) 250
LmnI GCTCC 3 cut(s) 11, 326, 351
Lsp1109I GCAGC 9 cut(s) 199, 418, 535, 551, 562, 565, 568, 576, 666
MaeI CTAG 1 cut(s) 748
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 2 cut(s) 142, 151
MbiI CCGCTC 1 cut(s) 321
MboII GAAGA 2 cut(s) 176, 283
MhlI GDGCHC 4 cut(s) 8, 126, 312, 366
Mly113I GGCGCC 1 cut(s) 492
MlyI GAGTC 3 cut(s) 161, 175, 735
MmeI TCCRAC 1 cut(s) 348
MroI TCCGGA 1 cut(s) 722
MroNI GCCGGC 1 cut(s) 567
MslI CAYNNNNRTG 1 cut(s) 149
MspA1I CMGCKG 4 cut(s) 249, 298, 559, 589
MspR9I CCNGG 5 cut(s) 38, 175, 401, 594, 619
Mva1269I GAATGC 1 cut(s) 270
MvaI CCWGG 1 cut(s) 175
MvnI CGCG 2 cut(s) 249, 306
MwoI GCNNNNNNNGC 8 cut(s) 113, 252, 278, 312, 327, 434, 556, 685
NaeI GCCGGC 1 cut(s) 569
NarI GGCGCC 1 cut(s) 492
NciI CCSGG 4 cut(s) 38, 401, 594, 619
NcoI CCATGG 1 cut(s) 664
NgoMIV GCCGGC 1 cut(s) 567
NlaIII CATG 2 cut(s) 277, 668
NlaIV GGNNCC 7 cut(s) 7, 42, 90, 347, 388, 493, 638
NmeAIII GCCGAG 4 cut(s) 149, 291, 385, 587
NmuCI GTSAC 2 cut(s) 142, 151
NotI GCGGCCGC 1 cut(s) 250
OliI CACNNNNGTG 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 176
PctI GAATGC 1 cut(s) 270
PdiI GCCGGC 1 cut(s) 569
PfeI GAWTC 2 cut(s) 288, 669
PflMI CCANNNNNTGG 1 cut(s) 342
PleI GAGTC 3 cut(s) 161, 175, 735
PluTI GGCGCC 1 cut(s) 495
PpsI GAGTC 3 cut(s) 161, 175, 735
PpuMI RGGWCCY 1 cut(s) 88
Psp124BI GAGCTC 1 cut(s) 312
Psp5II RGGWCCY 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 173
PspGI CCWGG 1 cut(s) 173
PspN4I GGNNCC 7 cut(s) 7, 42, 90, 347, 388, 493, 638
PspPI GGNCC 4 cut(s) 16, 40, 88, 223
PspPPI RGGWCCY 1 cut(s) 88
PstNI CAGNNNCTG 2 cut(s) 559, 589
PvuII CAGCTG 2 cut(s) 298, 559
RsaI GTAC 3 cut(s) 512, 638, 656
RsaNI GTAC 3 cut(s) 511, 637, 655
RseI CAYNNNNRTG 1 cut(s) 149
SacI GAGCTC 1 cut(s) 312
SacII CCGCGG 1 cut(s) 250
Sau96I GGNCC 4 cut(s) 16, 40, 88, 223
SchI GAGTC 3 cut(s) 161, 175, 735
ScrFI CCNGG 5 cut(s) 38, 175, 401, 594, 619
SduI GDGCHC 4 cut(s) 8, 126, 312, 366
SfoI GGCGCC 1 cut(s) 493
Sfr303I CCGCGG 1 cut(s) 250
SgrAI CRCCGGYG 1 cut(s) 488
SgrBI CCGCGG 1 cut(s) 250
SinI GGWCC 3 cut(s) 40, 88, 223
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SspDI GGCGCC 1 cut(s) 491
SspMI CTAG 1 cut(s) 748
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 5 cut(s) 36, 173, 399, 592, 617
StyI CCWWGG 3 cut(s) 219, 234, 664
TaaI ACNGT 3 cut(s) 142, 151, 478
TaiI ACGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 339, 744
TfiI GAWTC 2 cut(s) 288, 669
TscAI CASTG 1 cut(s) 461
TseFI GTSAC 2 cut(s) 142, 151
TseI GCWGC 9 cut(s) 187, 406, 523, 550, 553, 556, 564, 589, 679
Tsp45I GTSAC 2 cut(s) 142, 151
TspRI CASTG 1 cut(s) 461
Van91I CCANNNNNTGG 1 cut(s) 342
VpaK11BI GGWCC 3 cut(s) 40, 88, 223
XspI CTAG 1 cut(s) 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.