Rw3G014630
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0016655
Physical Location & Seq
Reverse (-)
14861494 .. 14862316
823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G014630.1

Sequence Viewer

Length: 756 bp
ATGGGCTCCGAGATGGCCCTCCAAGACTACCTGTCCCCGGACCCACCACACCACCAGCAGCAGCAACTTCCCACACTCAAGCGTGAGGACCCGGCCCAAAACGTCGCCGTTCCGGCGGCGGTGCTCACCTCCACCACGACCGTCACTACCGTGACGACTGCTGAAGACTCGGCCAGGACGACTCAGCAGCTCAGCCGCACTCGGAGGTCGACCAACACCAAGGACCGCCACACCAAGGTCAACGGCCGCGGCCGCCGTGTCCGAATGCCCGCCATGTGCGCCGCCAGAATCTTCCAGCTGACCCGCGAGCTCGGCCACCGCTCCGACGGCGAGACCATCGAGTGGCTCCTCCGCCACGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACGCACCCGGCGCAGCTCTGCACCTCCACCCCCGCCATCTCCGCCTCAATGCCCTCCCTCCACTGCCGCCCCACCATCAGCACCGTCAACACCACCGGCGCCGCCGGTCAGCTCGTGTACCACCTCCAGCAGCACCCTGTTTCCCAGTCCCACCACCAGCAGCAGCAGCAGCTGAGCTGCCGGCTCGACTTGTGCCAGCCGCTGCCCGGTTTGGACTACTCGGCGGTGGCCGGGAACAACAACGGCGGGTACCAGAACAGCCACGGGTACAACCACCATGGATTCACGGCGCTGCTGTTGCAGTCTGGAGTGGGGGACGGGGGAGACGCCGCCTCCGGAGAAGGCTCTCAGGGACTCGACTAG

Protein Analysis

251

Amino Acids

26.94

Weight (kDa)

7.25

Isoelectric Point (pI)

54.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 72 - 185 1.3e-26 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016655)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37000
fragaria_vesca FvH4_6g16170
malus_domestica MD12G1115100.v1.1
prunus_persica Prupe.6G234200_v2.0.a1
pyrus_communis pycom12g11440
rosa_chinensis RchiOBHm_Chr3g0470021
rosa_laevigata RLG00000024303
rosa_multiflora Rmu_sc0017440.1_g000006
rosa_roxburghii Rroxscaffold_6G00411290
rosa_rugosa Rorug03G0106100
rosa_samantha Rh3BG179400 Rh3CG170000 Rh3DG195700
rosa_wichuraiana Rw3G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 642
AccB1I GGYRCC 3 cut(s) 386, 491, 642
AccB7I CCANNNNNTGG 1 cut(s) 342
AccBSI CCGCTC 1 cut(s) 321
AccI GTMKAC 1 cut(s) 209
AccII CGCG 2 cut(s) 249, 306
AccIII TCCGGA 1 cut(s) 728
AcoI YGGCCR 5 cut(s) 171, 244, 250, 313, 621
AcuI CTGAAG 1 cut(s) 183
AcyI GRCGYC 2 cut(s) 492, 720
AfaI GTAC 3 cut(s) 512, 644, 662
AfiI CCNNNNNNNGG 4 cut(s) 37, 235, 342, 599
AhdI GACNNNNNGTC 1 cut(s) 31
AjnI CCWGG 1 cut(s) 173
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 7 cut(s) 190, 298, 310, 409, 505, 565, 570
AluI AGCT 7 cut(s) 190, 298, 310, 409, 505, 565, 570
Alw21I GWGCWC 2 cut(s) 126, 312
Alw26I GTCTC 2 cut(s) 326, 711
AlwNI CAGNNNCTG 2 cut(s) 565, 595
Aor13HI TCCGGA 1 cut(s) 728
AoxI GGCC 7 cut(s) 15, 93, 171, 244, 250, 313, 621
Asp718I GGTACC 1 cut(s) 642
AspLEI GCGC 4 cut(s) 281, 406, 494, 685
AspS9I GGNCC 5 cut(s) 16, 40, 88, 94, 223
AsuC2I CCSGG 5 cut(s) 38, 92, 401, 600, 625
AsuHPI GGTGA 1 cut(s) 118
AvaII GGWCC 3 cut(s) 40, 88, 223
BanI GGYRCC 3 cut(s) 386, 491, 642
BanII GRGCYC 3 cut(s) 8, 312, 366
BauI CACGAG 1 cut(s) 506
BbsI GAAGAC 1 cut(s) 171
Bbv12I GWGCWC 2 cut(s) 126, 312
BccI CCATC 5 cut(s) 7, 344, 377, 437, 476
BceAI ACGGC 6 cut(s) 92, 240, 259, 343, 652, 696
BciT130I CCWGG 1 cut(s) 175
BcnI CCSGG 5 cut(s) 38, 92, 401, 600, 625
BcoDI GTCTC 2 cut(s) 326, 711
BfaI CTAG 1 cut(s) 754
BfoI RGCGCY 2 cut(s) 495, 686
BglI GCCNNNNNGGC 1 cut(s) 113
BlpI GCTNAGC 2 cut(s) 191, 566
Bme1390I CCNGG 6 cut(s) 38, 92, 175, 401, 600, 625
Bme18I GGWCC 3 cut(s) 40, 88, 223
BmeRI GACNNNNNGTC 1 cut(s) 31
BmgT120I GGNCC 5 cut(s) 16, 40, 88, 94, 223
BmiI GGNNCC 7 cut(s) 7, 42, 90, 347, 388, 493, 644
BmrFI CCNGG 6 cut(s) 38, 92, 175, 401, 600, 625
BmrI ACTGGG 1 cut(s) 532
BmuI ACTGGG 1 cut(s) 532
BpiI GAAGAC 1 cut(s) 171
BpmI CTGGAG 2 cut(s) 503, 720
Bpu1102I GCTNAGC 2 cut(s) 191, 566
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 5 cut(s) 38, 92, 401, 600, 625
BsaHI GRCGYC 2 cut(s) 492, 720
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 6 cut(s) 36, 219, 234, 247, 655, 670
BsaWI WCCGGW 1 cut(s) 728
BsaXI ACNNNNNCTCC 2 cut(s) 710, 740
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 235, 342, 599
Bse118I RCCGGY 5 cut(s) 383, 389, 488, 497, 573
Bse1I ACTGG 1 cut(s) 538
BseAI TCCGGA 1 cut(s) 728
BseBI CCWGG 1 cut(s) 175
BseDI CCNNGG 6 cut(s) 36, 219, 234, 247, 655, 670
BseLI CCNNNNNNNGG 4 cut(s) 37, 235, 342, 599
BseMII CTCAG 4 cut(s) 197, 205, 557, 755
BseNI ACTGG 1 cut(s) 538
BseRI GAGGAG 1 cut(s) 338
BseX3I CGGCCG 2 cut(s) 244, 250
BsgI GTGCAG 1 cut(s) 397
Bsh1236I CGCG 2 cut(s) 249, 306
Bsh1285I CGRYCG 3 cut(s) 141, 247, 253
BshFI GGCC 7 cut(s) 17, 95, 173, 246, 252, 315, 623
BshNI GGYRCC 3 cut(s) 386, 491, 642
BsiEI CGRYCG 3 cut(s) 141, 247, 253
BsiHKAI GWGCWC 2 cut(s) 126, 312
BslFI GGGAC 3 cut(s) 19, 526, 722
BslI CCNNNNNNNGG 4 cut(s) 37, 235, 342, 599
BsmAI GTCTC 2 cut(s) 326, 711
BsmBI CGTCTC 1 cut(s) 711
BsmFI GGGAC 3 cut(s) 19, 526, 722
BsmI GAATGC 1 cut(s) 270
BsnI GGCC 7 cut(s) 17, 95, 173, 246, 252, 315, 623
Bso31I GGTCTC 1 cut(s) 326
Bsp1286I GDGCHC 4 cut(s) 8, 126, 312, 366
Bsp13I TCCGGA 1 cut(s) 728
Bsp1720I GCTNAGC 2 cut(s) 191, 566
Bsp19I CCATGG 1 cut(s) 670
BspANI GGCC 7 cut(s) 17, 95, 173, 246, 252, 315, 623
BspCNI CTCAG 4 cut(s) 196, 204, 558, 754
BspEI TCCGGA 1 cut(s) 728
BspFNI CGCG 2 cut(s) 249, 306
BspLI GGNNCC 7 cut(s) 7, 42, 90, 347, 388, 493, 644
BspT107I GGYRCC 3 cut(s) 386, 491, 642
BspTNI GGTCTC 1 cut(s) 326
BsrBI CCGCTC 1 cut(s) 321
BsrFI RCCGGY 5 cut(s) 383, 389, 488, 497, 573
BsrI ACTGG 1 cut(s) 538
BssAI RCCGGY 5 cut(s) 383, 389, 488, 497, 573
BssECI CCNNGG 6 cut(s) 36, 219, 234, 247, 655, 670
BssNI GRCGYC 2 cut(s) 492, 720
BssSI CACGAG 1 cut(s) 506
BssT1I CCWWGG 3 cut(s) 219, 234, 670
Bst2BI CACGAG 1 cut(s) 506
Bst2UI CCWGG 1 cut(s) 175
Bst4CI ACNGT 3 cut(s) 142, 151, 478
BstACI GRCGYC 2 cut(s) 492, 720
BstC8I GCNNGC 5 cut(s) 270, 308, 395, 575, 590
BstDEI CTNAG 4 cut(s) 183, 191, 566, 741
BstDSI CCRYGG 3 cut(s) 247, 655, 670
BstFNI CGCG 2 cut(s) 249, 306
BstH2I RGCGCY 2 cut(s) 495, 686
BstHHI GCGC 4 cut(s) 281, 406, 494, 685
BstMAI GTCTC 2 cut(s) 326, 711
BstMCI CGRYCG 3 cut(s) 141, 247, 253
BstNI CCWGG 1 cut(s) 175
BstSCI CCNGG 6 cut(s) 36, 90, 173, 399, 598, 623
BstUI CGCG 2 cut(s) 249, 306
BstV2I GAAGAC 1 cut(s) 171
BstZI CGGCCG 2 cut(s) 244, 250
BsuRI GGCC 7 cut(s) 17, 95, 173, 246, 252, 315, 623
BtgI CCRYGG 3 cut(s) 247, 655, 670
BtgZI GCGATG 1 cut(s) 358
BtsI GCAGTG 1 cut(s) 454
BtsIMutI CAGTG 1 cut(s) 454
Cac8I GCNNGC 5 cut(s) 270, 308, 395, 575, 590
CaiI CAGNNNCTG 2 cut(s) 565, 595
CciNI GCGGCCGC 1 cut(s) 250
CfoI GCGC 4 cut(s) 281, 406, 494, 685
Cfr10I RCCGGY 5 cut(s) 383, 389, 488, 497, 573
Cfr13I GGNCC 5 cut(s) 16, 40, 88, 94, 223
Cfr42I CCGCGG 1 cut(s) 250
CseI GACGC 1 cut(s) 728
Csp6I GTAC 3 cut(s) 511, 643, 661
CviAII CATG 2 cut(s) 274, 671
CviQI GTAC 3 cut(s) 511, 643, 661
DdeI CTNAG 4 cut(s) 183, 191, 566, 741
DinI GGCGCC 1 cut(s) 493
DriI GACNNNNNGTC 1 cut(s) 31
EaeI YGGCCR 5 cut(s) 171, 244, 250, 313, 621
EagI CGGCCG 2 cut(s) 244, 250
Eam1105I GACNNNNNGTC 1 cut(s) 31
EciI GGCGGA 2 cut(s) 341, 424
Ecl136II GAGCTC 1 cut(s) 310
EclXI CGGCCG 2 cut(s) 244, 250
Eco130I CCWWGG 3 cut(s) 219, 234, 670
Eco24I GRGCYC 3 cut(s) 8, 312, 366
Eco31I GGTCTC 1 cut(s) 326
Eco47I GGWCC 3 cut(s) 40, 88, 223
Eco52I CGGCCG 2 cut(s) 244, 250
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 173
EcoT14I CCWWGG 3 cut(s) 219, 234, 670
EcoT38I GRGCYC 3 cut(s) 8, 312, 366
EgeI GGCGCC 1 cut(s) 493
EheI GGCGCC 1 cut(s) 493
ErhI CCWWGG 3 cut(s) 219, 234, 670
Esp3I CGTCTC 1 cut(s) 711
FaeI CATG 2 cut(s) 277, 674
FaiI YATR 2 cut(s) 275, 672
FaqI GGGAC 3 cut(s) 19, 526, 722
FatI CATG 2 cut(s) 273, 670
FauI CCCGC 4 cut(s) 277, 311, 433, 632
FblI GTMKAC 1 cut(s) 209
FriOI GRGCYC 3 cut(s) 8, 312, 366
FspBI CTAG 1 cut(s) 754
GlaI GCGC 4 cut(s) 280, 405, 493, 684
GsuI CTGGAG 2 cut(s) 503, 720
HaeII RGCGCY 2 cut(s) 495, 686
HaeIII GGCC 7 cut(s) 17, 95, 173, 246, 252, 315, 623
HgaI GACGC 1 cut(s) 728
HhaI GCGC 4 cut(s) 281, 406, 494, 685
Hin1I GRCGYC 2 cut(s) 492, 720
Hin1II CATG 2 cut(s) 277, 674
Hin6I GCGC 4 cut(s) 279, 404, 492, 683
HinP1I GCGC 4 cut(s) 279, 404, 492, 683
HincII GTYRAC 3 cut(s) 210, 241, 481
HindII GTYRAC 3 cut(s) 210, 241, 481
HinfI GANTC 5 cut(s) 167, 181, 288, 675, 747
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 4 cut(s) 210, 241, 481, 511
Hpy188I TCNGA 4 cut(s) 10, 204, 263, 325
Hpy188III TCNNGA 2 cut(s) 699, 729
Hpy8I GTNNAC 4 cut(s) 210, 241, 481, 511
Hpy99I CGWCG 2 cut(s) 107, 329
HpyAV CCTTC 1 cut(s) 728
HpyCH4III ACNGT 3 cut(s) 142, 151, 478
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 2 cut(s) 414, 694
HpyF3I CTNAG 4 cut(s) 183, 191, 566, 741
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 2 cut(s) 492, 720
Hsp92II CATG 2 cut(s) 277, 674
HspAI GCGC 4 cut(s) 279, 404, 492, 683
KasI GGCGCC 1 cut(s) 491
Kpn2I TCCGGA 1 cut(s) 728
KpnI GGTACC 1 cut(s) 646
KroI GCCGGC 1 cut(s) 573
KroNI GCCGGC 1 cut(s) 575
KspI CCGCGG 1 cut(s) 250
LmnI GCTCC 3 cut(s) 11, 326, 351
MaeI CTAG 1 cut(s) 754
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 2 cut(s) 142, 151
MbiI CCGCTC 1 cut(s) 321
MboII GAAGA 2 cut(s) 176, 283
MhlI GDGCHC 4 cut(s) 8, 126, 312, 366
Mly113I GGCGCC 1 cut(s) 492
MlyI GAGTC 3 cut(s) 161, 175, 741
MmeI TCCRAC 1 cut(s) 348
MroI TCCGGA 1 cut(s) 728
MroNI GCCGGC 1 cut(s) 573
MslI CAYNNNNRTG 1 cut(s) 149
MspA1I CMGCKG 4 cut(s) 249, 298, 565, 595
MspR9I CCNGG 6 cut(s) 38, 92, 175, 401, 600, 625
Mva1269I GAATGC 1 cut(s) 270
MvaI CCWGG 1 cut(s) 175
MvnI CGCG 2 cut(s) 249, 306
NaeI GCCGGC 1 cut(s) 575
NarI GGCGCC 1 cut(s) 492
NciI CCSGG 5 cut(s) 38, 92, 401, 600, 625
NcoI CCATGG 1 cut(s) 670
NgoMIV GCCGGC 1 cut(s) 573
NlaIII CATG 2 cut(s) 277, 674
NlaIV GGNNCC 7 cut(s) 7, 42, 90, 347, 388, 493, 644
NmeAIII GCCGAG 4 cut(s) 149, 291, 385, 593
NmuCI GTSAC 2 cut(s) 142, 151
NotI GCGGCCGC 1 cut(s) 250
OliI CACNNNNGTG 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 176
PctI GAATGC 1 cut(s) 270
PdiI GCCGGC 1 cut(s) 575
PfeI GAWTC 2 cut(s) 288, 675
PflMI CCANNNNNTGG 1 cut(s) 342
PleI GAGTC 3 cut(s) 161, 175, 741
PluTI GGCGCC 1 cut(s) 495
PpsI GAGTC 3 cut(s) 161, 175, 741
PpuMI RGGWCCY 1 cut(s) 88
Psp124BI GAGCTC 1 cut(s) 312
Psp5II RGGWCCY 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 173
PspGI CCWGG 1 cut(s) 173
PspN4I GGNNCC 7 cut(s) 7, 42, 90, 347, 388, 493, 644
PspPI GGNCC 5 cut(s) 16, 40, 88, 94, 223
PspPPI RGGWCCY 1 cut(s) 88
PstNI CAGNNNCTG 2 cut(s) 565, 595
PvuII CAGCTG 2 cut(s) 298, 565
RsaI GTAC 3 cut(s) 512, 644, 662
RsaNI GTAC 3 cut(s) 511, 643, 661
RseI CAYNNNNRTG 1 cut(s) 149
SacI GAGCTC 1 cut(s) 312
SacII CCGCGG 1 cut(s) 250
SalI GTCGAC 1 cut(s) 208
Sau96I GGNCC 5 cut(s) 16, 40, 88, 94, 223
SchI GAGTC 3 cut(s) 161, 175, 741
ScrFI CCNGG 6 cut(s) 38, 92, 175, 401, 600, 625
SduI GDGCHC 4 cut(s) 8, 126, 312, 366
SfoI GGCGCC 1 cut(s) 493
Sfr303I CCGCGG 1 cut(s) 250
SgrAI CRCCGGYG 1 cut(s) 488
SgrBI CCGCGG 1 cut(s) 250
SinI GGWCC 3 cut(s) 40, 88, 223
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SspDI GGCGCC 1 cut(s) 491
SspMI CTAG 1 cut(s) 754
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 6 cut(s) 36, 90, 173, 399, 598, 623
StyI CCWWGG 3 cut(s) 219, 234, 670
TaaI ACNGT 3 cut(s) 142, 151, 478
TaiI ACGT 1 cut(s) 105
TaqI TCGA 4 cut(s) 209, 339, 579, 750
TfiI GAWTC 2 cut(s) 288, 675
TscAI CASTG 1 cut(s) 461
TseFI GTSAC 2 cut(s) 142, 151
Tsp45I GTSAC 2 cut(s) 142, 151
TspRI CASTG 1 cut(s) 461
Van91I CCANNNNNTGG 1 cut(s) 342
VpaK11BI GGWCC 3 cut(s) 40, 88, 223
XmiI GTMKAC 1 cut(s) 209
XspI CTAG 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.