Rh3CG170000
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0016655
Physical Location & Seq
Reverse (-)
14834692 .. 14835000
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG170000.1

Sequence Viewer

Length: 309 bp
ATGCCCTCCCTCCACTGCCGCCCCACCATCAGCACCGTCAACACCACCGGCGCCGCCGGTCAGCTCGTGTACCACCTCCAGCAGCACCCTGTTTCCCAGTCCCACCAGCAGCAGCAGCTGAGCTGCCGGCTTGACTTGTGCCAGCCGCTGCCCGGTTTGGACTACTCGGCTGTGGCCGGGAACAACAACGGCGGGTACCAGAACAGCCACGGGTACAACCACCATGGATTCACGGCGCTGCTGTTGCAGTCTGGAGTGGGGGACGGGGGAGACGCCGCCTCCGGAGAAGGCTCTCAGGGACTCGACTAG

Protein Analysis

102

Amino Acids

10.64

Weight (kDa)

5.88

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016655)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37000
fragaria_vesca FvH4_6g16170
malus_domestica MD12G1115100.v1.1
prunus_persica Prupe.6G234200_v2.0.a1
pyrus_communis pycom12g11440
rosa_chinensis RchiOBHm_Chr3g0470021
rosa_laevigata RLG00000024303
rosa_multiflora Rmu_sc0017440.1_g000006
rosa_roxburghii Rroxscaffold_6G00411290
rosa_rugosa Rorug03G0106100
rosa_samantha Rh3BG179400 Rh3CG170000 Rh3DG195700
rosa_wichuraiana Rw3G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 195
AccB1I GGYRCC 2 cut(s) 50, 195
AccIII TCCGGA 1 cut(s) 281
AciI CCGC 5 cut(s) 19, 54, 146, 192, 276
AcoI YGGCCR 1 cut(s) 174
AcyI GRCGYC 2 cut(s) 51, 273
AfaI GTAC 3 cut(s) 71, 197, 215
AfiI CCNNNNNNNGG 1 cut(s) 152
AluBI AGCT 3 cut(s) 64, 118, 123
AluI AGCT 3 cut(s) 64, 118, 123
Alw26I GTCTC 1 cut(s) 264
AlwNI CAGNNNCTG 2 cut(s) 118, 148
Aor13HI TCCGGA 1 cut(s) 281
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 7 cut(s) 82, 109, 112, 115, 123, 148, 238
Asp718I GGTACC 1 cut(s) 195
AspLEI GCGC 2 cut(s) 53, 238
AsuC2I CCSGG 2 cut(s) 153, 178
BanI GGYRCC 2 cut(s) 50, 195
BauI CACGAG 1 cut(s) 65
BbvI GCAGC 7 cut(s) 94, 110, 121, 124, 127, 135, 225
BccI CCATC 1 cut(s) 35
BceAI ACGGC 2 cut(s) 205, 249
BcnI CCSGG 2 cut(s) 153, 178
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 1 cut(s) 307
BfoI RGCGCY 2 cut(s) 54, 239
BlpI GCTNAGC 1 cut(s) 119
Bme1390I CCNGG 2 cut(s) 153, 178
BmiI GGNNCC 2 cut(s) 52, 197
BmrFI CCNGG 2 cut(s) 153, 178
BmrI ACTGGG 1 cut(s) 91
BmuI ACTGGG 1 cut(s) 91
BpmI CTGGAG 2 cut(s) 62, 273
Bpu1102I GCTNAGC 1 cut(s) 119
BpuMI CCSGG 2 cut(s) 153, 178
BsaHI GRCGYC 2 cut(s) 51, 273
BsaJI CCNNGG 2 cut(s) 208, 223
BsaWI WCCGGW 1 cut(s) 281
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse118I RCCGGY 3 cut(s) 47, 56, 126
Bse1I ACTGG 1 cut(s) 97
BseAI TCCGGA 1 cut(s) 281
BseDI CCNNGG 2 cut(s) 208, 223
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMII CTCAG 2 cut(s) 110, 308
BseNI ACTGG 1 cut(s) 97
BseXI GCAGC 7 cut(s) 94, 110, 121, 124, 127, 135, 225
BshFI GGCC 1 cut(s) 176
BshNI GGYRCC 2 cut(s) 50, 195
BsiSI CCGG 6 cut(s) 48, 57, 127, 153, 177, 282
BslFI GGGAC 2 cut(s) 85, 275
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 264
BsmBI CGTCTC 1 cut(s) 264
BsmFI GGGAC 2 cut(s) 85, 275
BsnI GGCC 1 cut(s) 176
Bsp13I TCCGGA 1 cut(s) 281
Bsp1720I GCTNAGC 1 cut(s) 119
Bsp19I CCATGG 1 cut(s) 223
BspACI CCGC 5 cut(s) 19, 54, 146, 192, 276
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 2 cut(s) 111, 307
BspEI TCCGGA 1 cut(s) 281
BspLI GGNNCC 2 cut(s) 52, 197
BspT107I GGYRCC 2 cut(s) 50, 195
BsrFI RCCGGY 3 cut(s) 47, 56, 126
BsrI ACTGG 1 cut(s) 97
BssAI RCCGGY 3 cut(s) 47, 56, 126
BssECI CCNNGG 2 cut(s) 208, 223
BssNI GRCGYC 2 cut(s) 51, 273
BssSI CACGAG 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 223
Bst2BI CACGAG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 37
BstACI GRCGYC 2 cut(s) 51, 273
BstC8I GCNNGC 2 cut(s) 128, 143
BstDEI CTNAG 2 cut(s) 119, 294
BstDSI CCRYGG 2 cut(s) 208, 223
BstH2I RGCGCY 2 cut(s) 54, 239
BstHHI GCGC 2 cut(s) 53, 238
BstMAI GTCTC 1 cut(s) 264
BstMWI GCNNNNNNNGC 2 cut(s) 115, 244
BstSCI CCNGG 2 cut(s) 151, 176
BstV1I GCAGC 7 cut(s) 94, 110, 121, 124, 127, 135, 225
BsuRI GGCC 1 cut(s) 176
BtgI CCRYGG 2 cut(s) 208, 223
BtsI GCAGTG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 128, 143
CaiI CAGNNNCTG 2 cut(s) 118, 148
CfoI GCGC 2 cut(s) 53, 238
Cfr10I RCCGGY 3 cut(s) 47, 56, 126
CseI GACGC 1 cut(s) 281
Csp6I GTAC 3 cut(s) 70, 196, 214
CviAII CATG 1 cut(s) 224
CviJI RGCY 9 cut(s) 64, 118, 123, 130, 145, 170, 176, 207, 291
CviKI_1 RGCY 9 cut(s) 64, 118, 123, 130, 145, 170, 176, 207, 291
CviQI GTAC 3 cut(s) 70, 196, 214
DdeI CTNAG 2 cut(s) 119, 294
DinI GGCGCC 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 223
EgeI GGCGCC 1 cut(s) 52
EheI GGCGCC 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 223
Esp3I CGTCTC 1 cut(s) 264
FaeI CATG 1 cut(s) 227
FaiI YATR 1 cut(s) 225
FaqI GGGAC 2 cut(s) 85, 275
FatI CATG 1 cut(s) 223
FauI CCCGC 1 cut(s) 185
FspBI CTAG 1 cut(s) 307
GlaI GCGC 2 cut(s) 52, 237
GsuI CTGGAG 2 cut(s) 62, 273
HaeII RGCGCY 2 cut(s) 54, 239
HaeIII GGCC 1 cut(s) 176
HapII CCGG 6 cut(s) 48, 57, 127, 153, 177, 282
HgaI GACGC 1 cut(s) 281
HhaI GCGC 2 cut(s) 53, 238
Hin1I GRCGYC 2 cut(s) 51, 273
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 2 cut(s) 51, 236
HinP1I GCGC 2 cut(s) 51, 236
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 2 cut(s) 228, 300
HpaII CCGG 6 cut(s) 48, 57, 127, 153, 177, 282
Hpy166II GTNNAC 2 cut(s) 40, 70
Hpy188III TCNNGA 2 cut(s) 252, 282
Hpy8I GTNNAC 2 cut(s) 40, 70
HpyAV CCTTC 1 cut(s) 281
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 244
HpyF3I CTNAG 2 cut(s) 119, 294
Hsp92I GRCGYC 2 cut(s) 51, 273
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 2 cut(s) 51, 236
KasI GGCGCC 1 cut(s) 50
Kpn2I TCCGGA 1 cut(s) 281
KpnI GGTACC 1 cut(s) 199
KroI GCCGGC 1 cut(s) 126
KroNI GCCGGC 1 cut(s) 128
Lsp1109I GCAGC 7 cut(s) 94, 110, 121, 124, 127, 135, 225
MaeI CTAG 1 cut(s) 307
Mly113I GGCGCC 1 cut(s) 51
MlyI GAGTC 1 cut(s) 294
MnlI CCTC 4 cut(s) 16, 20, 86, 289
MroI TCCGGA 1 cut(s) 281
MroNI GCCGGC 1 cut(s) 126
MspA1I CMGCKG 2 cut(s) 118, 148
MspI CCGG 6 cut(s) 48, 57, 127, 153, 177, 282
MspR9I CCNGG 2 cut(s) 153, 178
MwoI GCNNNNNNNGC 2 cut(s) 115, 244
NaeI GCCGGC 1 cut(s) 128
NarI GGCGCC 1 cut(s) 51
NciI CCSGG 2 cut(s) 153, 178
NcoI CCATGG 1 cut(s) 223
NgoMIV GCCGGC 1 cut(s) 126
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 2 cut(s) 52, 197
NmeAIII GCCGAG 1 cut(s) 146
PdiI GCCGGC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 228
PleI GAGTC 1 cut(s) 294
PluTI GGCGCC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 52, 197
PstNI CAGNNNCTG 2 cut(s) 118, 148
PvuII CAGCTG 1 cut(s) 118
RsaI GTAC 3 cut(s) 71, 197, 215
RsaNI GTAC 3 cut(s) 70, 196, 214
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 2 cut(s) 153, 178
SetI ASST 4 cut(s) 66, 78, 120, 125
SfoI GGCGCC 1 cut(s) 52
SgrAI CRCCGGYG 1 cut(s) 47
SsiI CCGC 5 cut(s) 19, 54, 146, 192, 276
SspDI GGCGCC 1 cut(s) 50
SspMI CTAG 1 cut(s) 307
StyD4I CCNGG 2 cut(s) 151, 176
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 303
TauI GCSGC 4 cut(s) 21, 56, 148, 278
TfiI GAWTC 1 cut(s) 228
TscAI CASTG 1 cut(s) 20
TseI GCWGC 7 cut(s) 82, 109, 112, 115, 123, 148, 238
TspRI CASTG 1 cut(s) 20
XspI CTAG 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.