pycom12g11440
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0016655
Physical Location & Seq
Forward (+)
13702417 .. 13703365
949 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g11440.1

Sequence Viewer

Length: 876 bp
ATGGGAAAAAGACCAGTTATTGAACGCTGCCCAGCGGCTGGGACCCACCCTCGCTTTCCCTTTCCCCACGTATCTCAAATTTCTCCCCACCCACAATATAAAGGGGACCCCCACTCCTTGTGTGGGGTCAATCGAATCCCCTCAACTTCTCAAAACCCTAATTTAACACTCTCTACTCCAAACCCTAAAACCACCATCGCCACCGCCATGGCCTCCGATATGGCCCTCCAGCCACTCCACAAACTCGAAGACCGAAAGCCCACCGTCTTGCCCACCGCCGGTCTTACTTCCGCCACCATCCAAACGGCGCCGTCGCTCCAGCACTCCCAACTATCCGACCTCCAACTCCAGGCGCAGCCCAAGCCCCAGAAACAGGTCAGCCGGCGGAACACTAGGGACCGCCATACAAAAGTCAATGGACGGGGCCGCCGCGTCCGGATGCCGGCCATGTGCGCCGCCCGCATCTTCCAGCTGACCCGGGAGCTCGGACACCGCTCCGACGGCGAGACCATCGAGTGGCTCCTCCGCCACGCCGAGCCCTCGATCATCGCCGCCACCGGCTCCGGCACACTCCCGGCGGAGCCGATCTCGACCACCTCCCCGTCCGTATCGTCACAAATGCCGTCCGTCACTTGCCGTGTTCAGCCGCTCAAGTCGCTCAGAAGCTCCGGACAGTTCTTGTACCCGGCGGCGGCCCAGGCTCATCAGGCGATGCAGCTGCAGCTGGACTTGTGCCAGCCGATGGGGGTGGACTATAATGCGGGATACCGGCACATGCCGTTCACGTCGCTGCTGCTGCAGACGGGGGAGAGTGAGGTGGAGGAGGGGCAGGCGGAGGAGGAGGTTGTGGGAGTTGGAATTGGGGATGATGAGTAG

Protein Analysis

292

Amino Acids

31.68

Weight (kDa)

8.87

Isoelectric Point (pI)

59.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 130 - 206 1.4e-25 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016655)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37000
fragaria_vesca FvH4_6g16170
malus_domestica MD12G1115100.v1.1
prunus_persica Prupe.6G234200_v2.0.a1
pyrus_communis pycom12g11440
rosa_chinensis RchiOBHm_Chr3g0470021
rosa_laevigata RLG00000024303
rosa_multiflora Rmu_sc0017440.1_g000006
rosa_roxburghii Rroxscaffold_6G00411290
rosa_rugosa Rorug03G0106100
rosa_samantha Rh3BG179400 Rh3CG170000 Rh3DG195700
rosa_wichuraiana Rw3G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 307
AccB7I CCANNNNNTGG 3 cut(s) 38, 516, 742
AccBSI CCGCTC 2 cut(s) 495, 649
AccII CGCG 1 cut(s) 432
AccIII TCCGGA 2 cut(s) 435, 668
AcoI YGGCCR 1 cut(s) 444
AcsI RAATTY 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 308
AfaI GTAC 1 cut(s) 683
AfiI CCNNNNNNNGG 9 cut(s) 38, 123, 278, 349, 373, 442, 516, 691, 742
AgsI TTSAA 1 cut(s) 23
AjiI CACGTC 1 cut(s) 786
AjnI CCWGG 2 cut(s) 348, 696
AluBI AGCT 5 cut(s) 472, 484, 666, 718, 724
AluI AGCT 5 cut(s) 472, 484, 666, 718, 724
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 1 cut(s) 500
AlwNI CAGNNNCTG 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 477
Aor13HI TCCGGA 2 cut(s) 435, 668
AoxI GGCC 5 cut(s) 210, 222, 424, 444, 693
ApeKI GCWGC 8 cut(s) 27, 355, 715, 718, 721, 790, 793, 796
ApoI RAATTY 1 cut(s) 78
AspLEI GCGC 3 cut(s) 310, 355, 455
AspS9I GGNCC 6 cut(s) 42, 106, 223, 397, 424, 694
AsuC2I CCSGG 4 cut(s) 478, 479, 575, 686
AvaI CYCGRG 1 cut(s) 477
AvaII GGWCC 3 cut(s) 42, 106, 397
BanI GGYRCC 1 cut(s) 307
BanII GRGCYC 2 cut(s) 486, 540
BbsI GAAGAC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 8 cut(s) 14, 367, 705, 727, 733, 777, 780, 783
BccI CCATC 4 cut(s) 203, 305, 518, 736
BceAI ACGGC 6 cut(s) 295, 321, 517, 607, 621, 763
BcgI CGANNNNNNTGC 2 cut(s) 700, 734
BciT130I CCWGG 2 cut(s) 350, 698
BciVI GTATCC 1 cut(s) 758
BcnI CCSGG 4 cut(s) 478, 479, 575, 686
BcoDI GTCTC 1 cut(s) 500
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 2 cut(s) 719, 797
BfoI RGCGCY 1 cut(s) 311
BfuI GTATCC 1 cut(s) 758
Bme1390I CCNGG 6 cut(s) 350, 478, 479, 575, 686, 698
Bme18I GGWCC 3 cut(s) 42, 106, 397
BmeT110I CYCGRG 1 cut(s) 477
BmgBI CACGTC 1 cut(s) 786
BmgT120I GGNCC 6 cut(s) 42, 106, 223, 397, 424, 694
BmrFI CCNGG 6 cut(s) 350, 478, 479, 575, 686, 698
BmsI GCATC 3 cut(s) 429, 471, 702
BpiI GAAGAC 1 cut(s) 255
BplI GAGNNNNNCTC 2 cut(s) 572, 604
BpmI CTGGAG 3 cut(s) 212, 302, 332
BpuEI CTTGAG 1 cut(s) 635
BpuMI CCSGG 4 cut(s) 478, 479, 575, 686
BsaAI YACGTR 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 308
BsaI GGTCTC 1 cut(s) 500
BsaJI CCNNGG 3 cut(s) 207, 477, 696
BsaWI WCCGGW 2 cut(s) 435, 668
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 9 cut(s) 38, 123, 278, 349, 373, 442, 516, 691, 742
Bse118I RCCGGY 5 cut(s) 278, 381, 442, 557, 768
Bse1I ACTGG 1 cut(s) 14
BseAI TCCGGA 2 cut(s) 435, 668
BseBI CCWGG 2 cut(s) 350, 698
BseDI CCNNGG 3 cut(s) 207, 477, 696
BseGI GGATG 3 cut(s) 297, 444, 871
BseLI CCNNNNNNNGG 9 cut(s) 38, 123, 278, 349, 373, 442, 516, 691, 742
BseMII CTCAG 1 cut(s) 673
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 4 cut(s) 512, 836, 851, 854
BseXI GCAGC 8 cut(s) 14, 367, 705, 727, 733, 777, 780, 783
BseYI CCCAGC 2 cut(s) 31, 38
Bsh1236I CGCG 1 cut(s) 432
BshFI GGCC 5 cut(s) 212, 224, 426, 446, 695
BshNI GGYRCC 1 cut(s) 307
BsiHKAI GWGCWC 1 cut(s) 486
BsiHKCI CYCGRG 1 cut(s) 477
BslFI GGGAC 3 cut(s) 55, 119, 410
BslI CCNNNNNNNGG 9 cut(s) 38, 123, 278, 349, 373, 442, 516, 691, 742
BsmAI GTCTC 1 cut(s) 500
BsmFI GGGAC 3 cut(s) 55, 119, 410
BsnI GGCC 5 cut(s) 212, 224, 426, 446, 695
Bso31I GGTCTC 1 cut(s) 500
BsoBI CYCGRG 1 cut(s) 477
Bsp1286I GDGCHC 2 cut(s) 486, 540
Bsp13I TCCGGA 2 cut(s) 435, 668
Bsp143I GATC 2 cut(s) 543, 585
Bsp19I CCATGG 1 cut(s) 207
BspANI GGCC 5 cut(s) 212, 224, 426, 446, 695
BspCNI CTCAG 1 cut(s) 672
BspEI TCCGGA 2 cut(s) 435, 668
BspFNI CGCG 1 cut(s) 432
BspMAI CTGCAG 2 cut(s) 723, 801
BspT107I GGYRCC 1 cut(s) 307
BspTNI GGTCTC 1 cut(s) 500
BsrBI CCGCTC 2 cut(s) 495, 649
BsrFI RCCGGY 5 cut(s) 278, 381, 442, 557, 768
BsrI ACTGG 1 cut(s) 14
BssAI RCCGGY 5 cut(s) 278, 381, 442, 557, 768
BssECI CCNNGG 3 cut(s) 207, 477, 696
BssMI GATC 2 cut(s) 543, 585
BssNI GRCGYC 1 cut(s) 308
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 2 cut(s) 350, 698
Bst4CI ACNGT 2 cut(s) 265, 675
BstACI GRCGYC 1 cut(s) 308
BstBAI YACGTR 1 cut(s) 70
BstC8I GCNNGC 5 cut(s) 383, 444, 460, 737, 831
BstDEI CTNAG 1 cut(s) 659
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 3 cut(s) 297, 444, 871
BstFNI CGCG 1 cut(s) 432
BstH2I RGCGCY 1 cut(s) 311
BstHHI GCGC 3 cut(s) 310, 355, 455
BstKTI GATC 2 cut(s) 546, 588
BstMAI GTCTC 1 cut(s) 500
BstMBI GATC 2 cut(s) 543, 585
BstMWI GCNNNNNNNGC 9 cut(s) 361, 452, 459, 501, 655, 698, 707, 721, 796
BstNI CCWGG 2 cut(s) 350, 698
BstNSI RCATGY 1 cut(s) 778
BstSCI CCNGG 6 cut(s) 348, 476, 477, 573, 684, 696
BstSFI CTRYAG 2 cut(s) 719, 797
BstUI CGCG 1 cut(s) 432
BstV1I GCAGC 8 cut(s) 14, 367, 705, 727, 733, 777, 780, 783
BstV2I GAAGAC 1 cut(s) 255
BstXI CCANNNNNNTGG 1 cut(s) 208
BsuI GTATCC 1 cut(s) 758
BsuRI GGCC 5 cut(s) 212, 224, 426, 446, 695
BtgI CCRYGG 1 cut(s) 207
BtgZI GCGATG 3 cut(s) 181, 532, 725
BtrI CACGTC 1 cut(s) 786
BtsCI GGATG 3 cut(s) 297, 444, 871
Cac8I GCNNGC 5 cut(s) 383, 444, 460, 737, 831
CaiI CAGNNNCTG 1 cut(s) 38
CfoI GCGC 3 cut(s) 310, 355, 455
Cfr10I RCCGGY 5 cut(s) 278, 381, 442, 557, 768
Cfr13I GGNCC 6 cut(s) 42, 106, 223, 397, 424, 694
Cfr9I CCCGGG 1 cut(s) 477
CseI GACGC 1 cut(s) 421
Csp6I GTAC 1 cut(s) 682
CviAII CATG 3 cut(s) 208, 448, 775
CviQI GTAC 1 cut(s) 682
DdeI CTNAG 1 cut(s) 659
DinI GGCGCC 1 cut(s) 309
DpnI GATC 2 cut(s) 545, 587
DpnII GATC 2 cut(s) 543, 585
EaeI YGGCCR 1 cut(s) 444
EciI GGCGGA 5 cut(s) 280, 400, 515, 593, 848
Ecl136II GAGCTC 1 cut(s) 484
Eco130I CCWWGG 1 cut(s) 207
Eco24I GRGCYC 2 cut(s) 486, 540
Eco31I GGTCTC 1 cut(s) 500
Eco47I GGWCC 3 cut(s) 42, 106, 397
Eco53kI GAGCTC 1 cut(s) 484
Eco88I CYCGRG 1 cut(s) 477
EcoICRI GAGCTC 1 cut(s) 484
EcoO109I RGGNCCY 2 cut(s) 42, 106
EcoRII CCWGG 2 cut(s) 348, 696
EcoT14I CCWWGG 1 cut(s) 207
EcoT38I GRGCYC 2 cut(s) 486, 540
EgeI GGCGCC 1 cut(s) 309
EheI GGCGCC 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 3 cut(s) 211, 451, 778
FaiI YATR 7 cut(s) 99, 209, 221, 405, 449, 756, 776
FaqI GGGAC 3 cut(s) 55, 119, 410
FatI CATG 3 cut(s) 207, 447, 774
FauI CCCGC 2 cut(s) 467, 754
FokI GGATG 2 cut(s) 284, 451
FriOI GRGCYC 2 cut(s) 486, 540
FspBI CTAG 1 cut(s) 393
GlaI GCGC 3 cut(s) 309, 354, 454
GsaI CCCAGC 2 cut(s) 35, 42
GsuI CTGGAG 3 cut(s) 212, 302, 332
HaeII RGCGCY 1 cut(s) 311
HaeIII GGCC 5 cut(s) 212, 224, 426, 446, 695
HgaI GACGC 1 cut(s) 421
HhaI GCGC 3 cut(s) 310, 355, 455
Hin1I GRCGYC 1 cut(s) 308
Hin1II CATG 3 cut(s) 211, 451, 778
Hin6I GCGC 3 cut(s) 308, 353, 453
HinP1I GCGC 3 cut(s) 308, 353, 453
HinfI GANTC 1 cut(s) 135
Hpy166II GTNNAC 2 cut(s) 751, 783
Hpy188I TCNGA 5 cut(s) 217, 337, 488, 499, 662
Hpy188III TCNNGA 3 cut(s) 436, 589, 669
Hpy8I GTNNAC 2 cut(s) 751, 783
Hpy99I CGWCG 3 cut(s) 316, 503, 790
HpyCH4III ACNGT 2 cut(s) 265, 675
HpyCH4IV ACGT 2 cut(s) 69, 785
HpyCH4V TGCA 3 cut(s) 715, 721, 799
HpyF10VI GCNNNNNNNGC 9 cut(s) 361, 452, 459, 501, 655, 698, 707, 721, 796
HpyF3I CTNAG 1 cut(s) 659
HpySE526I ACGT 2 cut(s) 69, 785
Hsp92I GRCGYC 1 cut(s) 308
Hsp92II CATG 3 cut(s) 211, 451, 778
HspAI GCGC 3 cut(s) 308, 353, 453
KasI GGCGCC 1 cut(s) 307
KflI GGGWCCC 2 cut(s) 42, 106
Kpn2I TCCGGA 2 cut(s) 435, 668
KroI GCCGGC 2 cut(s) 381, 442
KroNI GCCGGC 2 cut(s) 383, 444
Kzo9I GATC 2 cut(s) 543, 585
LmnI GCTCC 7 cut(s) 321, 481, 500, 525, 566, 580, 671
Lsp1109I GCAGC 8 cut(s) 14, 367, 705, 727, 733, 777, 780, 783
LweI GCATC 3 cut(s) 429, 471, 702
MaeI CTAG 1 cut(s) 393
MaeII ACGT 2 cut(s) 69, 785
MaeIII GTNAC 2 cut(s) 612, 628
MalI GATC 2 cut(s) 545, 587
MbiI CCGCTC 2 cut(s) 495, 649
MboI GATC 2 cut(s) 543, 585
MboII GAAGA 2 cut(s) 260, 457
MhlI GDGCHC 2 cut(s) 486, 540
MluCI AATT 3 cut(s) 78, 160, 858
Mly113I GGCGCC 1 cut(s) 308
MmeI TCCRAC 4 cut(s) 360, 367, 522, 835
MroI TCCGGA 2 cut(s) 435, 668
MroNI GCCGGC 2 cut(s) 381, 442
MseI TTAA 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 206
MspA1I CMGCKG 4 cut(s) 35, 472, 718, 724
MspR9I CCNGG 6 cut(s) 350, 478, 479, 575, 686, 698
MvaI CCWGG 2 cut(s) 350, 698
MvnI CGCG 1 cut(s) 432
MwoI GCNNNNNNNGC 9 cut(s) 361, 452, 459, 501, 655, 698, 707, 721, 796
NaeI GCCGGC 2 cut(s) 383, 444
NarI GGCGCC 1 cut(s) 308
NciI CCSGG 4 cut(s) 478, 479, 575, 686
NcoI CCATGG 1 cut(s) 207
NdeII GATC 2 cut(s) 543, 585
NgoMIV GCCGGC 2 cut(s) 381, 442
NlaIII CATG 3 cut(s) 211, 451, 778
NmeAIII GCCGAG 1 cut(s) 559
NmuCI GTSAC 2 cut(s) 612, 628
NspI RCATGY 1 cut(s) 778
PdiI GCCGGC 2 cut(s) 383, 444
PfeI GAWTC 1 cut(s) 135
PflMI CCANNNNNTGG 3 cut(s) 38, 516, 742
PluTI GGCGCC 1 cut(s) 311
Ppu21I YACGTR 1 cut(s) 70
PpuMI RGGWCCY 2 cut(s) 42, 106
Psp124BI GAGCTC 1 cut(s) 486
Psp5II RGGWCCY 2 cut(s) 42, 106
Psp6I CCWGG 2 cut(s) 348, 696
PspFI CCCAGC 2 cut(s) 31, 38
PspGI CCWGG 2 cut(s) 348, 696
PspPI GGNCC 6 cut(s) 42, 106, 223, 397, 424, 694
PspPPI RGGWCCY 2 cut(s) 42, 106
PstI CTGCAG 2 cut(s) 723, 801
PstNI CAGNNNCTG 1 cut(s) 38
PvuII CAGCTG 3 cut(s) 472, 718, 724
RsaI GTAC 1 cut(s) 683
RsaNI GTAC 1 cut(s) 682
RseI CAYNNNNRTG 1 cut(s) 206
SacI GAGCTC 1 cut(s) 486
SaqAI TTAA 1 cut(s) 164
Sau3AI GATC 2 cut(s) 543, 585
Sau96I GGNCC 6 cut(s) 42, 106, 223, 397, 424, 694
ScrFI CCNGG 6 cut(s) 350, 478, 479, 575, 686, 698
SduI GDGCHC 2 cut(s) 486, 540
SfaNI GCATC 3 cut(s) 429, 471, 702
SfcI CTRYAG 2 cut(s) 719, 797
SfoI GGCGCC 1 cut(s) 309
SinI GGWCC 3 cut(s) 42, 106, 397
SmaI CCCGGG 1 cut(s) 479
SmiMI CAYNNNNRTG 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 650
SmoI CTYRAG 1 cut(s) 650
Sse9I AATT 3 cut(s) 78, 160, 858
SspDI GGCGCC 1 cut(s) 307
SspMI CTAG 1 cut(s) 393
SstI GAGCTC 1 cut(s) 486
StyD4I CCNGG 6 cut(s) 348, 476, 477, 573, 684, 696
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 265, 675
TaiI ACGT 2 cut(s) 72, 788
TaqI TCGA 5 cut(s) 133, 246, 513, 542, 590
TaqII GACCGA 1 cut(s) 267
TasI AATT 3 cut(s) 78, 160, 858
TauI GCSGC 8 cut(s) 38, 429, 432, 458, 554, 649, 692, 695
TfiI GAWTC 1 cut(s) 135
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseFI GTSAC 2 cut(s) 612, 628
TseI GCWGC 8 cut(s) 27, 355, 715, 718, 721, 790, 793, 796
Tsp45I GTSAC 2 cut(s) 612, 628
TspGWI ACGGA 2 cut(s) 595, 616
TspMI CCCGGG 1 cut(s) 477
Van91I CCANNNNNTGG 3 cut(s) 38, 516, 742
VpaK11BI GGWCC 3 cut(s) 42, 106, 397
XapI RAATTY 1 cut(s) 78
XceI RCATGY 1 cut(s) 778
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XmaI CCCGGG 1 cut(s) 477
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.