FvH4_6g16170
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016655
Physical Location & Seq
Reverse (-)
10196649 .. 10197440
792 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16170.t1

Sequence Viewer

Length: 792 bp
ATGGGCTCCGAGATGGCCCTCCAGGACTACTTGTCCCCGGACCCACCACACCACCACCACCACCAGCCACACCTTCCCTCACTCAAGCTTGAAGACTTGACCCAAAACGTCGCCGTTCCAGCGGCGGTGCTCCACCCCACTACCACAACCGTCACGACTGGTGACAACTCAGGGAAGACGACGGCGGCTCAGCAGCTCAGCCGCACCCGGAGATCGACCAACACTAAGGACCGGCACACCAAGGTCAACGGCCGGGGCCGCCGTGTCCGAATGCCCGCCATGTGCGCCGCCAGAATCTTCCAACTGACAAGGGAGCTCGGCCACCGCTCCGACGGCGAGACCATAGAGTGGCTCCTCCGCCACGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACCCAACCGGCGCAGCTCTGCACCTCCACACCTTCCATGCCCGTCTCAATACCCTCCCTCCCCTGCCGCCCCACTGTCACCACCGCCAGCGCCGGTCAGTTCATCTACCACCACCTCCAGCTCCCAGTCTCTCAGGCTCACCAGCAACAGCAGCAGCAGCAGCTGAGCTGCCGGCTCGACTTGTGCCAGCCGCTGCCTGGTCTGGACTACGCGGTGGCCGGTAACAACCACGGCGGGTACCAGAACAGCCACTACAACAACCATGGATTCGCTGCAGGAGAAAACAGCCATGGATTCACCGCGCTGCTGCTGCAGTCTGGGGTCAGTGACGGGGAAACGCCTCCGCCTCCGCGGAAGGTTCTCAGGGGCTCGACTAGAGAAGTGAGATTCTAG

Protein Analysis

264

Amino Acids

28.68

Weight (kDa)

9.12

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 74 - 149 1e-25 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016655)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37000
fragaria_vesca FvH4_6g16170
malus_domestica MD12G1115100.v1.1
prunus_persica Prupe.6G234200_v2.0.a1
pyrus_communis pycom12g11440
rosa_chinensis RchiOBHm_Chr3g0470021
rosa_laevigata RLG00000024303
rosa_multiflora Rmu_sc0017440.1_g000006
rosa_roxburghii Rroxscaffold_6G00411290
rosa_rugosa Rorug03G0106100
rosa_samantha Rh3BG179400 Rh3CG170000 Rh3DG195700
rosa_wichuraiana Rw3G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 636
AccB1I GGYRCC 3 cut(s) 392, 398, 636
AccB7I CCANNNNNTGG 1 cut(s) 348
AccBSI CCGCTC 1 cut(s) 327
AccII CGCG 3 cut(s) 611, 701, 751
AcoI YGGCCR 3 cut(s) 250, 319, 615
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 2 cut(s) 348, 596
AgsI TTSAA 1 cut(s) 92
AhdI GACNNNNNGTC 1 cut(s) 31
AjnI CCWGG 2 cut(s) 21, 595
AluBI AGCT 7 cut(s) 88, 196, 316, 415, 520, 562, 567
AluI AGCT 7 cut(s) 88, 196, 316, 415, 520, 562, 567
Alw21I GWGCWC 2 cut(s) 132, 318
Alw26I GTCTC 3 cut(s) 332, 448, 532
AlwNI CAGNNNCTG 2 cut(s) 562, 592
AoxI GGCC 5 cut(s) 15, 250, 256, 319, 615
Asp718I GGTACC 1 cut(s) 636
AspLEI GCGC 4 cut(s) 287, 412, 491, 703
AspS9I GGNCC 4 cut(s) 16, 40, 229, 256
AsuC2I CCSGG 3 cut(s) 38, 208, 254
AsuHPI GGTGA 4 cut(s) 173, 469, 530, 688
AvaII GGWCC 2 cut(s) 40, 229
BanI GGYRCC 3 cut(s) 392, 398, 636
BanII GRGCYC 4 cut(s) 8, 318, 372, 770
BbsI GAAGAC 2 cut(s) 99, 182
Bbv12I GWGCWC 2 cut(s) 132, 318
BccI CCATC 2 cut(s) 7, 383
BceAI ACGGC 6 cut(s) 98, 198, 246, 265, 349, 646
BciT130I CCWGG 2 cut(s) 23, 597
BcnI CCSGG 3 cut(s) 38, 208, 254
BcoDI GTCTC 3 cut(s) 332, 448, 532
BfaI CTAG 2 cut(s) 774, 790
BfmI CTRYAG 2 cut(s) 672, 710
BfoI RGCGCY 1 cut(s) 492
BlpI GCTNAGC 3 cut(s) 189, 197, 563
Bme1390I CCNGG 5 cut(s) 23, 38, 208, 254, 597
Bme18I GGWCC 2 cut(s) 40, 229
BmeRI GACNNNNNGTC 1 cut(s) 31
BmgT120I GGNCC 4 cut(s) 16, 40, 229, 256
BmiI GGNNCC 7 cut(s) 7, 42, 257, 353, 394, 400, 638
BmrFI CCNGG 5 cut(s) 23, 38, 208, 254, 597
BmrI ACTGGG 1 cut(s) 518
BmuI ACTGGG 1 cut(s) 518
BpiI GAAGAC 2 cut(s) 99, 182
BpmI CTGGAG 2 cut(s) 5, 500
Bpu1102I GCTNAGC 3 cut(s) 189, 197, 563
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 3 cut(s) 38, 208, 254
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 7 cut(s) 36, 240, 253, 628, 661, 688, 749
BsaXI ACNNNNNCTCC 2 cut(s) 441, 471
Bsc4I CCNNNNNNNGG 2 cut(s) 348, 596
Bse118I RCCGGY 7 cut(s) 231, 389, 395, 406, 491, 570, 617
Bse1I ACTGG 2 cut(s) 163, 524
BseBI CCWGG 2 cut(s) 23, 597
BseDI CCNNGG 7 cut(s) 36, 240, 253, 628, 661, 688, 749
BseLI CCNNNNNNNGG 2 cut(s) 348, 596
BseMII CTCAG 6 cut(s) 183, 203, 211, 545, 554, 775
BseNI ACTGG 2 cut(s) 163, 524
BseRI GAGGAG 1 cut(s) 344
BseX3I CGGCCG 1 cut(s) 250
BsgI GTGCAG 1 cut(s) 403
Bsh1236I CGCG 3 cut(s) 611, 701, 751
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 5 cut(s) 17, 252, 258, 321, 617
BshNI GGYRCC 3 cut(s) 392, 398, 636
BsiEI CGRYCG 1 cut(s) 253
BsiHKAI GWGCWC 2 cut(s) 132, 318
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 2 cut(s) 348, 596
BsmAI GTCTC 3 cut(s) 332, 448, 532
BsmBI CGTCTC 1 cut(s) 448
BsmFI GGGAC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 276
BsnI GGCC 5 cut(s) 17, 252, 258, 321, 617
Bso31I GGTCTC 1 cut(s) 332
Bsp1286I GDGCHC 5 cut(s) 8, 132, 318, 372, 770
Bsp143I GATC 1 cut(s) 212
Bsp1720I GCTNAGC 3 cut(s) 189, 197, 563
Bsp19I CCATGG 2 cut(s) 661, 688
BspANI GGCC 5 cut(s) 17, 252, 258, 321, 617
BspCNI CTCAG 6 cut(s) 182, 202, 210, 544, 555, 774
BspFNI CGCG 3 cut(s) 611, 701, 751
BspLI GGNNCC 7 cut(s) 7, 42, 257, 353, 394, 400, 638
BspMAI CTGCAG 2 cut(s) 676, 714
BspT107I GGYRCC 3 cut(s) 392, 398, 636
BspTNI GGTCTC 1 cut(s) 332
BsrBI CCGCTC 1 cut(s) 327
BsrFI RCCGGY 7 cut(s) 231, 389, 395, 406, 491, 570, 617
BsrI ACTGG 2 cut(s) 163, 524
BssAI RCCGGY 7 cut(s) 231, 389, 395, 406, 491, 570, 617
BssECI CCNNGG 7 cut(s) 36, 240, 253, 628, 661, 688, 749
BssMI GATC 1 cut(s) 212
BssT1I CCWWGG 3 cut(s) 240, 661, 688
Bst2UI CCWGG 2 cut(s) 23, 597
Bst4CI ACNGT 2 cut(s) 151, 475
BstC8I GCNNGC 4 cut(s) 276, 487, 572, 587
BstDEI CTNAG 7 cut(s) 169, 189, 197, 225, 531, 563, 761
BstDSI CCRYGG 4 cut(s) 628, 661, 688, 749
BstFNI CGCG 3 cut(s) 611, 701, 751
BstH2I RGCGCY 1 cut(s) 492
BstHHI GCGC 4 cut(s) 287, 412, 491, 703
BstKTI GATC 1 cut(s) 215
BstMAI GTCTC 3 cut(s) 332, 448, 532
BstMBI GATC 1 cut(s) 212
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 8 cut(s) 119, 258, 284, 333, 550, 556, 559, 709
BstNI CCWGG 2 cut(s) 23, 597
BstSCI CCNGG 5 cut(s) 21, 36, 206, 252, 595
BstSFI CTRYAG 2 cut(s) 672, 710
BstUI CGCG 3 cut(s) 611, 701, 751
BstV2I GAAGAC 2 cut(s) 99, 182
BstZI CGGCCG 1 cut(s) 250
BsuRI GGCC 5 cut(s) 17, 252, 258, 321, 617
BtgI CCRYGG 4 cut(s) 628, 661, 688, 749
BtgZI GCGATG 1 cut(s) 364
BtsIMutI CAGTG 2 cut(s) 471, 730
Cac8I GCNNGC 4 cut(s) 276, 487, 572, 587
CaiI CAGNNNCTG 2 cut(s) 562, 592
CfoI GCGC 4 cut(s) 287, 412, 491, 703
Cfr10I RCCGGY 7 cut(s) 231, 389, 395, 406, 491, 570, 617
Cfr13I GGNCC 4 cut(s) 16, 40, 229, 256
Cfr42I CCGCGG 1 cut(s) 752
Csp6I GTAC 1 cut(s) 637
CviAII CATG 4 cut(s) 280, 436, 662, 689
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 7 cut(s) 169, 189, 197, 225, 531, 563, 761
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
DriI GACNNNNNGTC 1 cut(s) 31
EaeI YGGCCR 3 cut(s) 250, 319, 615
EagI CGGCCG 1 cut(s) 250
Eam1105I GACNNNNNGTC 1 cut(s) 31
EciI GGCGGA 2 cut(s) 347, 732
Ecl136II GAGCTC 1 cut(s) 316
EclXI CGGCCG 1 cut(s) 250
Eco130I CCWWGG 3 cut(s) 240, 661, 688
Eco24I GRGCYC 4 cut(s) 8, 318, 372, 770
Eco31I GGTCTC 1 cut(s) 332
Eco47I GGWCC 2 cut(s) 40, 229
Eco52I CGGCCG 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 316
EcoICRI GAGCTC 1 cut(s) 316
EcoRII CCWGG 2 cut(s) 21, 595
EcoT14I CCWWGG 3 cut(s) 240, 661, 688
EcoT38I GRGCYC 4 cut(s) 8, 318, 372, 770
ErhI CCWWGG 3 cut(s) 240, 661, 688
Esp3I CGTCTC 1 cut(s) 448
FaeI CATG 4 cut(s) 283, 439, 665, 692
FaiI YATR 5 cut(s) 281, 344, 437, 663, 690
FaqI GGGAC 1 cut(s) 19
FatI CATG 4 cut(s) 279, 435, 661, 688
FauI CCCGC 2 cut(s) 283, 626
FriOI GRGCYC 4 cut(s) 8, 318, 372, 770
FspBI CTAG 2 cut(s) 774, 790
GlaI GCGC 4 cut(s) 286, 411, 490, 702
GsuI CTGGAG 2 cut(s) 5, 500
HaeII RGCGCY 1 cut(s) 492
HaeIII GGCC 5 cut(s) 17, 252, 258, 321, 617
HhaI GCGC 4 cut(s) 287, 412, 491, 703
Hin1II CATG 4 cut(s) 283, 439, 665, 692
Hin6I GCGC 4 cut(s) 285, 410, 489, 701
HinP1I GCGC 4 cut(s) 285, 410, 489, 701
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 4 cut(s) 294, 666, 693, 786
HphI GGTGA 4 cut(s) 173, 469, 530, 688
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 3 cut(s) 10, 269, 331
Hpy188III TCNNGA 2 cut(s) 154, 602
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 3 cut(s) 113, 184, 335
HpyAV CCTTC 3 cut(s) 83, 441, 748
HpyCH4III ACNGT 2 cut(s) 151, 475
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 3 cut(s) 420, 674, 712
HpyF10VI GCNNNNNNNGC 8 cut(s) 119, 258, 284, 333, 550, 556, 559, 709
HpyF3I CTNAG 7 cut(s) 169, 189, 197, 225, 531, 563, 761
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 4 cut(s) 283, 439, 665, 692
HspAI GCGC 4 cut(s) 285, 410, 489, 701
KpnI GGTACC 1 cut(s) 640
KroI GCCGGC 1 cut(s) 570
KroNI GCCGGC 1 cut(s) 572
KspI CCGCGG 1 cut(s) 752
Kzo9I GATC 1 cut(s) 212
LmnI GCTCC 6 cut(s) 11, 135, 313, 332, 357, 525
MaeI CTAG 2 cut(s) 774, 790
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 5 cut(s) 151, 161, 475, 620, 725
MalI GATC 1 cut(s) 214
MbiI CCGCTC 1 cut(s) 327
MboI GATC 1 cut(s) 212
MboII GAAGA 3 cut(s) 104, 187, 289
MhlI GDGCHC 5 cut(s) 8, 132, 318, 372, 770
MmeI TCCRAC 2 cut(s) 325, 354
MroNI GCCGGC 1 cut(s) 570
MspA1I CMGCKG 4 cut(s) 122, 562, 592, 751
MspR9I CCNGG 5 cut(s) 23, 38, 208, 254, 597
Mva1269I GAATGC 1 cut(s) 276
MvaI CCWGG 2 cut(s) 23, 597
MvnI CGCG 3 cut(s) 611, 701, 751
MwoI GCNNNNNNNGC 8 cut(s) 119, 258, 284, 333, 550, 556, 559, 709
NaeI GCCGGC 1 cut(s) 572
NciI CCSGG 3 cut(s) 38, 208, 254
NcoI CCATGG 2 cut(s) 661, 688
NdeII GATC 1 cut(s) 212
NgoMIV GCCGGC 1 cut(s) 570
NlaIII CATG 4 cut(s) 283, 439, 665, 692
NlaIV GGNNCC 7 cut(s) 7, 42, 257, 353, 394, 400, 638
NmeAIII GCCGAG 2 cut(s) 297, 391
NmuCI GTSAC 4 cut(s) 151, 161, 475, 725
PctI GAATGC 1 cut(s) 276
PdiI GCCGGC 1 cut(s) 572
PfeI GAWTC 4 cut(s) 294, 666, 693, 786
PflMI CCANNNNNTGG 1 cut(s) 348
PfoI TCCNGGA 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 318
Psp6I CCWGG 2 cut(s) 21, 595
PspGI CCWGG 2 cut(s) 21, 595
PspN4I GGNNCC 7 cut(s) 7, 42, 257, 353, 394, 400, 638
PspPI GGNCC 4 cut(s) 16, 40, 229, 256
PsrI GAACNNNNNNTAC 2 cut(s) 635, 667
PstI CTGCAG 2 cut(s) 676, 714
PstNI CAGNNNCTG 2 cut(s) 562, 592
PvuII CAGCTG 1 cut(s) 562
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SacI GAGCTC 1 cut(s) 318
SacII CCGCGG 1 cut(s) 752
Sau3AI GATC 1 cut(s) 212
Sau96I GGNCC 4 cut(s) 16, 40, 229, 256
ScrFI CCNGG 5 cut(s) 23, 38, 208, 254, 597
SduI GDGCHC 5 cut(s) 8, 132, 318, 372, 770
SfcI CTRYAG 2 cut(s) 672, 710
Sfr303I CCGCGG 1 cut(s) 752
SgrBI CCGCGG 1 cut(s) 752
SinI GGWCC 2 cut(s) 40, 229
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SspMI CTAG 2 cut(s) 774, 790
SstI GAGCTC 1 cut(s) 318
StyD4I CCNGG 5 cut(s) 21, 36, 206, 252, 595
StyI CCWWGG 3 cut(s) 240, 661, 688
TaaI ACNGT 2 cut(s) 151, 475
TaiI ACGT 1 cut(s) 111
TaqI TCGA 3 cut(s) 215, 576, 770
TauI GCSGC 8 cut(s) 125, 188, 204, 261, 290, 386, 468, 592
TfiI GAWTC 4 cut(s) 294, 666, 693, 786
TscAI CASTG 2 cut(s) 478, 730
TseFI GTSAC 4 cut(s) 151, 161, 475, 725
Tsp45I GTSAC 4 cut(s) 151, 161, 475, 725
TspDTI ATGAA 1 cut(s) 490
TspRI CASTG 2 cut(s) 478, 730
Van91I CCANNNNNTGG 1 cut(s) 348
VpaK11BI GGWCC 2 cut(s) 40, 229
XcmI CCANNNNNNNNNTGG 1 cut(s) 593
XspI CTAG 2 cut(s) 774, 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.