MD12G1115100.v1.1
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0016655
Physical Location & Seq
Forward (+)
18364579 .. 18365235
657 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1115100.v1.1.491

Sequence Viewer

Length: 657 bp
ATGGCCCTCCAGCCACTCCACAAACTCGAAGACCGAAAGCCCACCGTCTTACCCACCGCCGTTCTTACTTCCGCCACCATCCAAACGGCGCCGTCGCTCCAGCACTCACAACTATCCGACCTCCAACTCCAGGCCCAGCCCAAGCCCCAGAAACAGGTCAGCCGCCGGAACACTAGGGACCGCCATACAAAAGTCAATGGACGGGGCCGCCGCGTCCGGATGCCGGCCATGTGCGCCGCCCGCATCTTCCAGCTGACCCGGGAGCTCGGCCACCGCTCCGACGGCGAGACCATCGAGTGGCTCCTCCGCCACGCCGAGCCCTCTATCATCGCCGCCACCGGCTCCGGCACCCTCCCGGCGGAGCCGATCTCGACCACCTCCCCGTCCGTGTCGTCCCAAATGCCGTCCGTCCCTTGCCGGGTTCAACCGCTCAAGTCGCTAAGAAGCTCCGGACAGTTCCTGTACCCGGCGGCGGCCCAGGCTCATCAGGCGATGCAGCTGCAGCTGGACTTGTGCCAGCCGATGGGGGTGGACTATAATGCGGGGTACCGGCACATGCCGTTCACGTCGCTGCTGCTGCAGACGGGGGAGAGTGAGGTGGAGGAGGGGCAGCCGGAGGAGGAGGTTGTGGGAGTTGGAATTGGGGATGATGAGTAG

Protein Analysis

219

Amino Acids

23.9

Weight (kDa)

7.06

Isoelectric Point (pI)

64.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 57 - 132 1.1e-25 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016655)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37000
fragaria_vesca FvH4_6g16170
malus_domestica MD12G1115100.v1.1
prunus_persica Prupe.6G234200_v2.0.a1
pyrus_communis pycom12g11440
rosa_chinensis RchiOBHm_Chr3g0470021
rosa_laevigata RLG00000024303
rosa_multiflora Rmu_sc0017440.1_g000006
rosa_roxburghii Rroxscaffold_6G00411290
rosa_rugosa Rorug03G0106100
rosa_samantha Rh3BG179400 Rh3CG170000 Rh3DG195700
rosa_wichuraiana Rw3G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 546
AccB1I GGYRCC 3 cut(s) 88, 347, 546
AccB7I CCANNNNNTGG 2 cut(s) 297, 523
AccBSI CCGCTC 2 cut(s) 276, 430
AccII CGCG 1 cut(s) 213
AccIII TCCGGA 2 cut(s) 216, 449
AcoI YGGCCR 2 cut(s) 225, 268
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 2 cut(s) 464, 548
AfiI CCNNNNNNNGG 9 cut(s) 130, 154, 223, 297, 358, 418, 466, 472, 523
AgsI TTSAA 1 cut(s) 425
AjiI CACGTC 1 cut(s) 567
AjnI CCWGG 2 cut(s) 129, 477
AluBI AGCT 5 cut(s) 253, 265, 447, 499, 505
AluI AGCT 5 cut(s) 253, 265, 447, 499, 505
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 281
AlwNI CAGNNNCTG 1 cut(s) 460
Ama87I CYCGRG 1 cut(s) 258
Aor13HI TCCGGA 2 cut(s) 216, 449
AoxI GGCC 6 cut(s) 3, 132, 205, 225, 268, 474
ApeKI GCWGC 7 cut(s) 496, 499, 502, 571, 574, 577, 610
Asp718I GGTACC 1 cut(s) 546
AspLEI GCGC 2 cut(s) 91, 236
AspS9I GGNCC 5 cut(s) 4, 133, 178, 205, 475
AsuC2I CCSGG 5 cut(s) 259, 260, 356, 419, 467
AvaI CYCGRG 1 cut(s) 258
AvaII GGWCC 1 cut(s) 178
BanI GGYRCC 3 cut(s) 88, 347, 546
BanII GRGCYC 2 cut(s) 267, 321
BbsI GAAGAC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 7 cut(s) 486, 508, 514, 558, 561, 564, 622
BccI CCATC 3 cut(s) 86, 299, 517
BceAI ACGGC 6 cut(s) 44, 76, 102, 298, 388, 544
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BciT130I CCWGG 2 cut(s) 131, 479
BcnI CCSGG 5 cut(s) 259, 260, 356, 419, 467
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 1 cut(s) 174
BfmI CTRYAG 2 cut(s) 500, 578
BfoI RGCGCY 1 cut(s) 92
Bme1390I CCNGG 7 cut(s) 131, 259, 260, 356, 419, 467, 479
Bme18I GGWCC 1 cut(s) 178
BmeT110I CYCGRG 1 cut(s) 258
BmgBI CACGTC 1 cut(s) 567
BmgT120I GGNCC 5 cut(s) 4, 133, 178, 205, 475
BmiI GGNNCC 8 cut(s) 90, 179, 206, 302, 343, 349, 363, 548
BmrFI CCNGG 7 cut(s) 131, 259, 260, 356, 419, 467, 479
BmsI GCATC 3 cut(s) 210, 252, 483
BpiI GAAGAC 1 cut(s) 36
BplI GAGNNNNNCTC 2 cut(s) 353, 385
BpmI CTGGAG 2 cut(s) 83, 113
BpuEI CTTGAG 1 cut(s) 416
BpuMI CCSGG 5 cut(s) 259, 260, 356, 419, 467
BsaHI GRCGYC 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 2 cut(s) 258, 477
BsaWI WCCGGW 2 cut(s) 216, 449
Bsc4I CCNNNNNNNGG 9 cut(s) 130, 154, 223, 297, 358, 418, 466, 472, 523
Bse118I RCCGGY 3 cut(s) 223, 338, 549
BseAI TCCGGA 2 cut(s) 216, 449
BseBI CCWGG 2 cut(s) 131, 479
BseDI CCNNGG 2 cut(s) 258, 477
BseGI GGATG 3 cut(s) 78, 225, 652
BseLI CCNNNNNNNGG 9 cut(s) 130, 154, 223, 297, 358, 418, 466, 472, 523
BseRI GAGGAG 4 cut(s) 293, 617, 632, 635
BseXI GCAGC 7 cut(s) 486, 508, 514, 558, 561, 564, 622
BseYI CCCAGC 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 6 cut(s) 5, 134, 207, 227, 270, 476
BshNI GGYRCC 3 cut(s) 88, 347, 546
BsiHKAI GWGCWC 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 258
BslFI GGGAC 3 cut(s) 191, 379, 395
BslI CCNNNNNNNGG 9 cut(s) 130, 154, 223, 297, 358, 418, 466, 472, 523
BsmAI GTCTC 1 cut(s) 281
BsmFI GGGAC 3 cut(s) 191, 379, 395
BsnI GGCC 6 cut(s) 5, 134, 207, 227, 270, 476
Bso31I GGTCTC 1 cut(s) 281
BsoBI CYCGRG 1 cut(s) 258
Bsp1286I GDGCHC 2 cut(s) 267, 321
Bsp13I TCCGGA 2 cut(s) 216, 449
Bsp143I GATC 1 cut(s) 366
BspANI GGCC 6 cut(s) 5, 134, 207, 227, 270, 476
BspEI TCCGGA 2 cut(s) 216, 449
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 8 cut(s) 90, 179, 206, 302, 343, 349, 363, 548
BspMAI CTGCAG 2 cut(s) 504, 582
BspT107I GGYRCC 3 cut(s) 88, 347, 546
BspTNI GGTCTC 1 cut(s) 281
BsrBI CCGCTC 2 cut(s) 276, 430
BsrFI RCCGGY 3 cut(s) 223, 338, 549
BssAI RCCGGY 3 cut(s) 223, 338, 549
BssECI CCNNGG 2 cut(s) 258, 477
BssMI GATC 1 cut(s) 366
BssNI GRCGYC 1 cut(s) 89
Bst2UI CCWGG 2 cut(s) 131, 479
Bst4CI ACNGT 2 cut(s) 46, 456
BstACI GRCGYC 1 cut(s) 89
BstC8I GCNNGC 3 cut(s) 225, 241, 518
BstDEI CTNAG 1 cut(s) 440
BstF5I GGATG 3 cut(s) 78, 225, 652
BstFNI CGCG 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 2 cut(s) 91, 236
BstKTI GATC 1 cut(s) 369
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 1 cut(s) 366
BstMWI GCNNNNNNNGC 8 cut(s) 233, 240, 282, 436, 479, 488, 502, 577
BstNI CCWGG 2 cut(s) 131, 479
BstNSI RCATGY 1 cut(s) 559
BstSCI CCNGG 7 cut(s) 129, 257, 258, 354, 417, 465, 477
BstSFI CTRYAG 2 cut(s) 500, 578
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 7 cut(s) 486, 508, 514, 558, 561, 564, 622
BstV2I GAAGAC 1 cut(s) 36
BsuRI GGCC 6 cut(s) 5, 134, 207, 227, 270, 476
BtgZI GCGATG 2 cut(s) 313, 506
BtrI CACGTC 1 cut(s) 567
BtsCI GGATG 3 cut(s) 78, 225, 652
Cac8I GCNNGC 3 cut(s) 225, 241, 518
CaiI CAGNNNCTG 1 cut(s) 460
CfoI GCGC 2 cut(s) 91, 236
Cfr10I RCCGGY 3 cut(s) 223, 338, 549
Cfr13I GGNCC 5 cut(s) 4, 133, 178, 205, 475
Cfr9I CCCGGG 1 cut(s) 258
CseI GACGC 1 cut(s) 202
Csp6I GTAC 2 cut(s) 463, 547
CviAII CATG 2 cut(s) 229, 556
CviQI GTAC 2 cut(s) 463, 547
DdeI CTNAG 1 cut(s) 440
DinI GGCGCC 1 cut(s) 90
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
EaeI YGGCCR 2 cut(s) 225, 268
EciI GGCGGA 3 cut(s) 61, 296, 374
Ecl136II GAGCTC 1 cut(s) 265
Eco24I GRGCYC 2 cut(s) 267, 321
Eco31I GGTCTC 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 265
Eco88I CYCGRG 1 cut(s) 258
EcoICRI GAGCTC 1 cut(s) 265
EcoRII CCWGG 2 cut(s) 129, 477
EcoT38I GRGCYC 2 cut(s) 267, 321
EgeI GGCGCC 1 cut(s) 90
EheI GGCGCC 1 cut(s) 90
FaeI CATG 2 cut(s) 232, 559
FaiI YATR 4 cut(s) 186, 230, 537, 557
FaqI GGGAC 3 cut(s) 191, 379, 395
FatI CATG 2 cut(s) 228, 555
FauI CCCGC 2 cut(s) 248, 535
FokI GGATG 2 cut(s) 65, 232
FriOI GRGCYC 2 cut(s) 267, 321
FspBI CTAG 1 cut(s) 174
GlaI GCGC 2 cut(s) 90, 235
GsaI CCCAGC 1 cut(s) 139
GsuI CTGGAG 2 cut(s) 83, 113
HaeII RGCGCY 1 cut(s) 92
HaeIII GGCC 6 cut(s) 5, 134, 207, 227, 270, 476
HgaI GACGC 1 cut(s) 202
HhaI GCGC 2 cut(s) 91, 236
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 2 cut(s) 232, 559
Hin6I GCGC 2 cut(s) 89, 234
HinP1I GCGC 2 cut(s) 89, 234
Hpy166II GTNNAC 2 cut(s) 532, 564
Hpy188I TCNGA 2 cut(s) 118, 280
Hpy188III TCNNGA 3 cut(s) 217, 370, 450
Hpy8I GTNNAC 2 cut(s) 532, 564
Hpy99I CGWCG 3 cut(s) 97, 284, 571
HpyCH4III ACNGT 2 cut(s) 46, 456
HpyCH4IV ACGT 1 cut(s) 566
HpyCH4V TGCA 3 cut(s) 496, 502, 580
HpyF10VI GCNNNNNNNGC 8 cut(s) 233, 240, 282, 436, 479, 488, 502, 577
HpyF3I CTNAG 1 cut(s) 440
HpySE526I ACGT 1 cut(s) 566
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 2 cut(s) 232, 559
HspAI GCGC 2 cut(s) 89, 234
KasI GGCGCC 1 cut(s) 88
Kpn2I TCCGGA 2 cut(s) 216, 449
KpnI GGTACC 1 cut(s) 550
KroI GCCGGC 1 cut(s) 223
KroNI GCCGGC 1 cut(s) 225
Kzo9I GATC 1 cut(s) 366
LmnI GCTCC 7 cut(s) 102, 262, 281, 306, 347, 361, 452
Lsp1109I GCAGC 7 cut(s) 486, 508, 514, 558, 561, 564, 622
LweI GCATC 3 cut(s) 210, 252, 483
MaeI CTAG 1 cut(s) 174
MaeII ACGT 1 cut(s) 566
MalI GATC 1 cut(s) 368
MbiI CCGCTC 2 cut(s) 276, 430
MboI GATC 1 cut(s) 366
MboII GAAGA 2 cut(s) 41, 238
MhlI GDGCHC 2 cut(s) 267, 321
MluCI AATT 1 cut(s) 639
Mly113I GGCGCC 1 cut(s) 89
MmeI TCCRAC 4 cut(s) 141, 148, 303, 616
MroI TCCGGA 2 cut(s) 216, 449
MroNI GCCGGC 1 cut(s) 223
MspA1I CMGCKG 3 cut(s) 253, 499, 505
MspR9I CCNGG 7 cut(s) 131, 259, 260, 356, 419, 467, 479
MvaI CCWGG 2 cut(s) 131, 479
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 8 cut(s) 233, 240, 282, 436, 479, 488, 502, 577
NaeI GCCGGC 1 cut(s) 225
NarI GGCGCC 1 cut(s) 89
NciI CCSGG 5 cut(s) 259, 260, 356, 419, 467
NdeII GATC 1 cut(s) 366
NgoMIV GCCGGC 1 cut(s) 223
NlaIII CATG 2 cut(s) 232, 559
NlaIV GGNNCC 8 cut(s) 90, 179, 206, 302, 343, 349, 363, 548
NmeAIII GCCGAG 2 cut(s) 246, 340
NspI RCATGY 1 cut(s) 559
PdiI GCCGGC 1 cut(s) 225
PflMI CCANNNNNTGG 2 cut(s) 297, 523
PluTI GGCGCC 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 267
Psp6I CCWGG 2 cut(s) 129, 477
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 2 cut(s) 129, 477
PspN4I GGNNCC 8 cut(s) 90, 179, 206, 302, 343, 349, 363, 548
PspPI GGNCC 5 cut(s) 4, 133, 178, 205, 475
PstI CTGCAG 2 cut(s) 504, 582
PstNI CAGNNNCTG 1 cut(s) 460
PvuII CAGCTG 3 cut(s) 253, 499, 505
RsaI GTAC 2 cut(s) 464, 548
RsaNI GTAC 2 cut(s) 463, 547
SacI GAGCTC 1 cut(s) 267
Sau3AI GATC 1 cut(s) 366
Sau96I GGNCC 5 cut(s) 4, 133, 178, 205, 475
ScrFI CCNGG 7 cut(s) 131, 259, 260, 356, 419, 467, 479
SduI GDGCHC 2 cut(s) 267, 321
SfaNI GCATC 3 cut(s) 210, 252, 483
SfcI CTRYAG 2 cut(s) 500, 578
SfoI GGCGCC 1 cut(s) 90
SinI GGWCC 1 cut(s) 178
SmaI CCCGGG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 1 cut(s) 639
SspDI GGCGCC 1 cut(s) 88
SspMI CTAG 1 cut(s) 174
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 7 cut(s) 129, 257, 258, 354, 417, 465, 477
TaaI ACNGT 2 cut(s) 46, 456
TaiI ACGT 1 cut(s) 569
TaqI TCGA 3 cut(s) 27, 294, 371
TaqII GACCGA 1 cut(s) 48
TasI AATT 1 cut(s) 639
TauI GCSGC 7 cut(s) 165, 210, 213, 239, 335, 473, 476
TseI GCWGC 7 cut(s) 496, 499, 502, 571, 574, 577, 610
TspGWI ACGGA 2 cut(s) 376, 397
TspMI CCCGGG 1 cut(s) 258
Van91I CCANNNNNTGG 2 cut(s) 297, 523
VpaK11BI GGWCC 1 cut(s) 178
XceI RCATGY 1 cut(s) 559
XmaI CCCGGG 1 cut(s) 258
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.