RLG00000024303
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016655
Physical Location & Seq
Forward (+)
34290611 .. 34292084
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024303

Sequence Viewer

Length: 804 bp
ATGGGCTCCGAGATGGCCCTCCAAGACTACCTGTCCCCGGACCCACCACACCACCAAACCCAACAACACCAGCAGCAGCAGCAACTTCCCTCACTCAAGCGTGAGGACCCGACCCAAAACGTCGCCGTTCCGGCGGCGGTGCACACCACCACCACCACCACCGTGACGACTGCTGAAGACTCGGCCAGGACGACTCAGCAGCTCAGCCGCACTCGGAAGTCGACCAACACCAAAGACCGCCACACCAAGGTCAACGGCCGCGGCCGCCGTGTCCGAATGCCCGCCATGTGCGCCGCCAGAATCTTCCAGCTGACCCGCGAGCTCGGCCACCGCTCCGACGGCGAGACCATCGAGTGGCTCCTCCGCCACGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACCCACCCGGCGCAGCTCTGCACCTCCACCCCCGCCATGTCCGCCTCAATGCCCTCCCTCCCCTGCCGCCCCACCATCAGCACCGTCAACACCACCGGCGCCGCCGGTCAGCTCATGTACCACCTCCAGCAGCACCCTGTTTCCCAGTCCCACCACCACCACCAGCAGCTGAGCTGCCGGCTCGACTTGTGCCAGCCGCTGCCCGGTTTGGACTACTCGGCGGTGGCCGGGAACAACAACGGCGGGTACCAGAACAGCCACAGCTACAACCACCATGGATTCACGGCGCTGCTGTTGCAGTCCGGAGTCGGGGACGGGGGAGACGCCGCCTCCGGAGAAGGCTCTCAGGGACTCGACTACATATACTTCACCAGTGACCTTGGGGCAATTGCACCGTAA

Protein Analysis

268

Amino Acids

28.86

Weight (kDa)

6.99

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 76 - 170 4.6e-26 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016655)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37000
fragaria_vesca FvH4_6g16170
malus_domestica MD12G1115100.v1.1
prunus_persica Prupe.6G234200_v2.0.a1
pyrus_communis pycom12g11440
rosa_chinensis RchiOBHm_Chr3g0470021
rosa_laevigata RLG00000024303
rosa_multiflora Rmu_sc0017440.1_g000006
rosa_roxburghii Rroxscaffold_6G00411290
rosa_rugosa Rorug03G0106100
rosa_samantha Rh3BG179400 Rh3CG170000 Rh3DG195700
rosa_wichuraiana Rw3G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 651
AccB1I GGYRCC 4 cut(s) 398, 404, 503, 651
AccB7I CCANNNNNTGG 1 cut(s) 354
AccBSI CCGCTC 1 cut(s) 333
AccI GTMKAC 1 cut(s) 221
AccII CGCG 2 cut(s) 261, 318
AccIII TCCGGA 2 cut(s) 707, 737
AcoI YGGCCR 5 cut(s) 183, 256, 262, 325, 630
AcuI CTGAAG 1 cut(s) 195
AcyI GRCGYC 2 cut(s) 504, 729
AfaI GTAC 2 cut(s) 524, 653
AfiI CCNNNNNNNGG 5 cut(s) 37, 247, 354, 608, 714
AhdI GACNNNNNGTC 1 cut(s) 31
AjnI CCWGG 1 cut(s) 185
AleI CACNNNNGTG 1 cut(s) 161
AluBI AGCT 8 cut(s) 202, 310, 322, 421, 517, 574, 579, 669
AluI AGCT 8 cut(s) 202, 310, 322, 421, 517, 574, 579, 669
Alw21I GWGCWC 2 cut(s) 144, 324
Alw26I GTCTC 2 cut(s) 338, 720
Alw44I GTGCAC 1 cut(s) 140
AlwNI CAGNNNCTG 2 cut(s) 574, 604
Aor13HI TCCGGA 2 cut(s) 707, 737
AoxI GGCC 6 cut(s) 15, 183, 256, 262, 325, 630
ApaLI GTGCAC 1 cut(s) 140
Asp718I GGTACC 1 cut(s) 651
AspLEI GCGC 4 cut(s) 293, 418, 506, 694
AspS9I GGNCC 3 cut(s) 16, 40, 106
AsuC2I CCSGG 4 cut(s) 38, 413, 609, 634
AsuHPI GGTGA 1 cut(s) 766
AvaII GGWCC 2 cut(s) 40, 106
BaeGI GKGCMC 1 cut(s) 144
BanI GGYRCC 4 cut(s) 398, 404, 503, 651
BanII GRGCYC 3 cut(s) 8, 324, 378
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 144, 324
BccI CCATC 4 cut(s) 7, 356, 389, 488
BceAI ACGGC 6 cut(s) 110, 252, 271, 355, 661, 705
BciT130I CCWGG 1 cut(s) 187
BcnI CCSGG 4 cut(s) 38, 413, 609, 634
BcoDI GTCTC 2 cut(s) 338, 720
BfoI RGCGCY 2 cut(s) 507, 695
BglI GCCNNNNNGGC 1 cut(s) 131
BlpI GCTNAGC 2 cut(s) 203, 575
Bme1390I CCNGG 5 cut(s) 38, 187, 413, 609, 634
Bme18I GGWCC 2 cut(s) 40, 106
BmeRI GACNNNNNGTC 1 cut(s) 31
BmgT120I GGNCC 3 cut(s) 16, 40, 106
BmiI GGNNCC 8 cut(s) 7, 42, 108, 359, 400, 406, 505, 653
BmrFI CCNGG 5 cut(s) 38, 187, 413, 609, 634
BmrI ACTGGG 1 cut(s) 544
BmuI ACTGGG 1 cut(s) 544
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 515
Bpu1102I GCTNAGC 2 cut(s) 203, 575
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 4 cut(s) 38, 413, 609, 634
BsaHI GRCGYC 2 cut(s) 504, 729
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 5 cut(s) 36, 246, 259, 679, 784
BsaWI WCCGGW 2 cut(s) 707, 737
BsaXI ACNNNNNCTCC 2 cut(s) 719, 749
Bsc4I CCNNNNNNNGG 5 cut(s) 37, 247, 354, 608, 714
Bse118I RCCGGY 5 cut(s) 395, 401, 500, 509, 582
Bse1I ACTGG 2 cut(s) 550, 777
BseAI TCCGGA 2 cut(s) 707, 737
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 5 cut(s) 36, 246, 259, 679, 784
BseLI CCNNNNNNNGG 5 cut(s) 37, 247, 354, 608, 714
BseMII CTCAG 4 cut(s) 209, 217, 566, 764
BseNI ACTGG 2 cut(s) 550, 777
BseRI GAGGAG 1 cut(s) 350
BseSI GKGCMC 1 cut(s) 144
BseX3I CGGCCG 2 cut(s) 256, 262
BsgI GTGCAG 1 cut(s) 409
Bsh1236I CGCG 2 cut(s) 261, 318
Bsh1285I CGRYCG 2 cut(s) 259, 265
BshFI GGCC 6 cut(s) 17, 185, 258, 264, 327, 632
BshNI GGYRCC 4 cut(s) 398, 404, 503, 651
BsiEI CGRYCG 2 cut(s) 259, 265
BsiHKAI GWGCWC 2 cut(s) 144, 324
BslFI GGGAC 4 cut(s) 19, 538, 731, 768
BslI CCNNNNNNNGG 5 cut(s) 37, 247, 354, 608, 714
BsmAI GTCTC 2 cut(s) 338, 720
BsmBI CGTCTC 1 cut(s) 720
BsmFI GGGAC 4 cut(s) 19, 538, 731, 768
BsmI GAATGC 1 cut(s) 282
BsnI GGCC 6 cut(s) 17, 185, 258, 264, 327, 632
Bso31I GGTCTC 1 cut(s) 338
Bsp1286I GDGCHC 4 cut(s) 8, 144, 324, 378
Bsp13I TCCGGA 2 cut(s) 707, 737
Bsp1720I GCTNAGC 2 cut(s) 203, 575
Bsp19I CCATGG 1 cut(s) 679
BspANI GGCC 6 cut(s) 17, 185, 258, 264, 327, 632
BspCNI CTCAG 4 cut(s) 208, 216, 567, 763
BspEI TCCGGA 2 cut(s) 707, 737
BspFNI CGCG 2 cut(s) 261, 318
BspLI GGNNCC 8 cut(s) 7, 42, 108, 359, 400, 406, 505, 653
BspT107I GGYRCC 4 cut(s) 398, 404, 503, 651
BspTNI GGTCTC 1 cut(s) 338
BsrBI CCGCTC 1 cut(s) 333
BsrFI RCCGGY 5 cut(s) 395, 401, 500, 509, 582
BsrI ACTGG 2 cut(s) 550, 777
BssAI RCCGGY 5 cut(s) 395, 401, 500, 509, 582
BssECI CCNNGG 5 cut(s) 36, 246, 259, 679, 784
BssNI GRCGYC 2 cut(s) 504, 729
BssT1I CCWWGG 3 cut(s) 246, 679, 784
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 3 cut(s) 163, 490, 801
BstACI GRCGYC 2 cut(s) 504, 729
BstC8I GCNNGC 4 cut(s) 282, 320, 584, 599
BstDEI CTNAG 4 cut(s) 195, 203, 575, 750
BstDSI CCRYGG 2 cut(s) 259, 679
BstFNI CGCG 2 cut(s) 261, 318
BstH2I RGCGCY 2 cut(s) 507, 695
BstHHI GCGC 4 cut(s) 293, 418, 506, 694
BstMAI GTCTC 2 cut(s) 338, 720
BstMCI CGRYCG 2 cut(s) 259, 265
BstMWI GCNNNNNNNGC 8 cut(s) 79, 131, 264, 290, 324, 339, 446, 700
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 5 cut(s) 36, 185, 411, 607, 632
BstSLI GKGCMC 1 cut(s) 144
BstUI CGCG 2 cut(s) 261, 318
BstV2I GAAGAC 1 cut(s) 183
BstZI CGGCCG 2 cut(s) 256, 262
BsuRI GGCC 6 cut(s) 17, 185, 258, 264, 327, 632
BtgI CCRYGG 2 cut(s) 259, 679
BtgZI GCGATG 1 cut(s) 370
BtsIMutI CAGTG 1 cut(s) 784
Cac8I GCNNGC 4 cut(s) 282, 320, 584, 599
CaiI CAGNNNCTG 2 cut(s) 574, 604
CciNI GCGGCCGC 1 cut(s) 262
CfoI GCGC 4 cut(s) 293, 418, 506, 694
Cfr10I RCCGGY 5 cut(s) 395, 401, 500, 509, 582
Cfr13I GGNCC 3 cut(s) 16, 40, 106
Cfr42I CCGCGG 1 cut(s) 262
CseI GACGC 1 cut(s) 737
Csp6I GTAC 2 cut(s) 523, 652
CviAII CATG 4 cut(s) 286, 442, 520, 680
CviQI GTAC 2 cut(s) 523, 652
DdeI CTNAG 4 cut(s) 195, 203, 575, 750
DinI GGCGCC 1 cut(s) 505
DriI GACNNNNNGTC 1 cut(s) 31
EaeI YGGCCR 5 cut(s) 183, 256, 262, 325, 630
EagI CGGCCG 2 cut(s) 256, 262
Eam1105I GACNNNNNGTC 1 cut(s) 31
EciI GGCGGA 2 cut(s) 353, 436
Ecl136II GAGCTC 1 cut(s) 322
EclXI CGGCCG 2 cut(s) 256, 262
Eco130I CCWWGG 3 cut(s) 246, 679, 784
Eco24I GRGCYC 3 cut(s) 8, 324, 378
Eco31I GGTCTC 1 cut(s) 338
Eco47I GGWCC 2 cut(s) 40, 106
Eco52I CGGCCG 2 cut(s) 256, 262
Eco53kI GAGCTC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 195
EcoICRI GAGCTC 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 3 cut(s) 246, 679, 784
EcoT38I GRGCYC 3 cut(s) 8, 324, 378
EgeI GGCGCC 1 cut(s) 505
EheI GGCGCC 1 cut(s) 505
ErhI CCWWGG 3 cut(s) 246, 679, 784
Esp3I CGTCTC 1 cut(s) 720
FaeI CATG 4 cut(s) 289, 445, 523, 683
FaiI YATR 6 cut(s) 287, 443, 521, 681, 767, 769
FaqI GGGAC 4 cut(s) 19, 538, 731, 768
FatI CATG 4 cut(s) 285, 441, 519, 679
FauI CCCGC 4 cut(s) 289, 323, 445, 641
FblI GTMKAC 1 cut(s) 221
FriOI GRGCYC 3 cut(s) 8, 324, 378
GlaI GCGC 4 cut(s) 292, 417, 505, 693
GsuI CTGGAG 1 cut(s) 515
HaeII RGCGCY 2 cut(s) 507, 695
HaeIII GGCC 6 cut(s) 17, 185, 258, 264, 327, 632
HgaI GACGC 1 cut(s) 737
HhaI GCGC 4 cut(s) 293, 418, 506, 694
Hin1I GRCGYC 2 cut(s) 504, 729
Hin1II CATG 4 cut(s) 289, 445, 523, 683
Hin6I GCGC 4 cut(s) 291, 416, 504, 692
HinP1I GCGC 4 cut(s) 291, 416, 504, 692
HincII GTYRAC 3 cut(s) 222, 253, 493
HindII GTYRAC 3 cut(s) 222, 253, 493
HinfI GANTC 6 cut(s) 179, 193, 300, 684, 711, 756
HphI GGTGA 1 cut(s) 766
Hpy166II GTNNAC 4 cut(s) 142, 222, 253, 493
Hpy188I TCNGA 4 cut(s) 10, 216, 275, 337
Hpy188III TCNNGA 2 cut(s) 708, 738
Hpy8I GTNNAC 4 cut(s) 142, 222, 253, 493
Hpy99I CGWCG 2 cut(s) 125, 341
HpyAV CCTTC 1 cut(s) 737
HpyCH4III ACNGT 3 cut(s) 163, 490, 801
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 4 cut(s) 142, 426, 703, 797
HpyF10VI GCNNNNNNNGC 8 cut(s) 79, 131, 264, 290, 324, 339, 446, 700
HpyF3I CTNAG 4 cut(s) 195, 203, 575, 750
HpySE526I ACGT 1 cut(s) 120
Hsp92I GRCGYC 2 cut(s) 504, 729
Hsp92II CATG 4 cut(s) 289, 445, 523, 683
HspAI GCGC 4 cut(s) 291, 416, 504, 692
KasI GGCGCC 1 cut(s) 503
Kpn2I TCCGGA 2 cut(s) 707, 737
KpnI GGTACC 1 cut(s) 655
KroI GCCGGC 1 cut(s) 582
KroNI GCCGGC 1 cut(s) 584
KspI CCGCGG 1 cut(s) 262
LmnI GCTCC 3 cut(s) 11, 338, 363
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 2 cut(s) 163, 779
MbiI CCGCTC 1 cut(s) 333
MboII GAAGA 2 cut(s) 188, 295
MfeI CAATTG 1 cut(s) 792
MhlI GDGCHC 4 cut(s) 8, 144, 324, 378
MluCI AATT 1 cut(s) 792
Mly113I GGCGCC 1 cut(s) 504
MlyI GAGTC 4 cut(s) 173, 187, 720, 750
MmeI TCCRAC 1 cut(s) 360
MroI TCCGGA 2 cut(s) 707, 737
MroNI GCCGGC 1 cut(s) 582
MslI CAYNNNNRTG 1 cut(s) 161
MspA1I CMGCKG 4 cut(s) 261, 310, 574, 604
MspR9I CCNGG 5 cut(s) 38, 187, 413, 609, 634
MunI CAATTG 1 cut(s) 792
Mva1269I GAATGC 1 cut(s) 282
MvaI CCWGG 1 cut(s) 187
MvnI CGCG 2 cut(s) 261, 318
MwoI GCNNNNNNNGC 8 cut(s) 79, 131, 264, 290, 324, 339, 446, 700
NaeI GCCGGC 1 cut(s) 584
NarI GGCGCC 1 cut(s) 504
NciI CCSGG 4 cut(s) 38, 413, 609, 634
NcoI CCATGG 1 cut(s) 679
NgoMIV GCCGGC 1 cut(s) 582
NlaIII CATG 4 cut(s) 289, 445, 523, 683
NlaIV GGNNCC 8 cut(s) 7, 42, 108, 359, 400, 406, 505, 653
NmeAIII GCCGAG 4 cut(s) 161, 303, 397, 602
NmuCI GTSAC 2 cut(s) 163, 779
NotI GCGGCCGC 1 cut(s) 262
OliI CACNNNNGTG 1 cut(s) 161
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PctI GAATGC 1 cut(s) 282
PdiI GCCGGC 1 cut(s) 584
PfeI GAWTC 2 cut(s) 300, 684
PflMI CCANNNNNTGG 1 cut(s) 354
PleI GAGTC 4 cut(s) 173, 187, 719, 750
PluTI GGCGCC 1 cut(s) 507
PpsI GAGTC 4 cut(s) 173, 187, 719, 750
PpuMI RGGWCCY 1 cut(s) 106
Psp124BI GAGCTC 1 cut(s) 324
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 8 cut(s) 7, 42, 108, 359, 400, 406, 505, 653
PspPI GGNCC 3 cut(s) 16, 40, 106
PspPPI RGGWCCY 1 cut(s) 106
PstNI CAGNNNCTG 2 cut(s) 574, 604
PvuII CAGCTG 2 cut(s) 310, 574
RsaI GTAC 2 cut(s) 524, 653
RsaNI GTAC 2 cut(s) 523, 652
RseI CAYNNNNRTG 1 cut(s) 161
SacI GAGCTC 1 cut(s) 324
SacII CCGCGG 1 cut(s) 262
SalI GTCGAC 1 cut(s) 220
Sau96I GGNCC 3 cut(s) 16, 40, 106
SchI GAGTC 4 cut(s) 173, 187, 720, 750
ScrFI CCNGG 5 cut(s) 38, 187, 413, 609, 634
SduI GDGCHC 4 cut(s) 8, 144, 324, 378
SfoI GGCGCC 1 cut(s) 505
Sfr303I CCGCGG 1 cut(s) 262
SgrAI CRCCGGYG 1 cut(s) 500
SgrBI CCGCGG 1 cut(s) 262
SinI GGWCC 2 cut(s) 40, 106
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 1 cut(s) 792
SspDI GGCGCC 1 cut(s) 503
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 5 cut(s) 36, 185, 411, 607, 632
StyI CCWWGG 3 cut(s) 246, 679, 784
TaaI ACNGT 3 cut(s) 163, 490, 801
TaiI ACGT 1 cut(s) 123
TaqI TCGA 4 cut(s) 221, 351, 588, 759
TasI AATT 1 cut(s) 792
TfiI GAWTC 2 cut(s) 300, 684
TscAI CASTG 1 cut(s) 784
TseFI GTSAC 2 cut(s) 163, 779
Tsp45I GTSAC 2 cut(s) 163, 779
TspRI CASTG 1 cut(s) 784
Van91I CCANNNNNTGG 1 cut(s) 354
VneI GTGCAC 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 40, 106
XmiI GTMKAC 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.